Wall clock time and date at job start Fri Apr 10 2020 17:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46886 * 2 1 4 4 C 1.50701 * 109.47137 * 119.99853 * 2 1 3 5 5 H 1.07994 * 119.99872 * 120.00357 * 4 2 1 6 6 C 1.37881 * 119.99957 * 300.00355 * 4 2 1 7 7 N 1.31510 * 120.00232 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99927 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47414 * 89.99588 * 8 6 4 10 10 H 1.48501 * 109.47216 * 209.99863 * 8 6 4 11 11 H 1.48501 * 109.47070 * 329.99987 * 8 6 4 12 12 N 1.46896 * 109.47354 * 239.99928 * 2 1 3 13 13 C 1.46895 * 111.00205 * 306.04725 * 12 2 1 14 14 C 1.46904 * 110.99585 * 69.99855 * 12 2 1 15 15 C 1.50706 * 109.46798 * 170.00278 * 14 12 2 16 16 C 1.38275 * 119.91499 * 270.01908 * 15 14 12 17 17 C 1.38155 * 120.10705 * 179.76770 * 16 15 14 18 18 C 1.38833 * 119.95225 * 0.48601 * 17 16 15 19 19 N 1.39843 * 120.08042 * 179.76752 * 18 17 16 20 20 C 1.46901 * 110.99783 * 59.72800 * 19 18 17 21 21 C 1.46898 * 110.99914 * 295.77057 * 19 18 17 22 22 C 1.39079 * 119.83488 * 359.49272 * 18 17 16 23 23 F 1.35102 * 120.05289 * 180.27225 * 22 18 17 24 24 C 1.38282 * 119.89160 * 0.25649 * 22 18 17 25 25 H 1.08998 * 109.47245 * 299.99922 * 1 2 3 26 26 H 1.08997 * 109.47376 * 60.00038 * 1 2 3 27 27 H 1.08999 * 109.46886 * 179.97438 * 1 2 3 28 28 H 0.96997 * 120.00277 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.47497 * 183.94813 * 13 12 2 30 30 H 1.09004 * 109.47236 * 303.95630 * 13 12 2 31 31 H 1.09007 * 109.47102 * 63.94924 * 13 12 2 32 32 H 1.08997 * 109.47515 * 50.00219 * 14 12 2 33 33 H 1.09001 * 109.47471 * 289.99691 * 14 12 2 34 34 H 1.07994 * 119.94824 * 0.02562 * 16 15 14 35 35 H 1.08001 * 120.02530 * 180.25704 * 17 16 15 36 36 H 1.09002 * 109.47401 * 59.99695 * 20 19 18 37 37 H 1.09001 * 109.46874 * 299.99708 * 20 19 18 38 38 H 1.09004 * 109.46970 * 179.97438 * 20 19 18 39 39 H 1.09006 * 109.46770 * 179.97438 * 21 19 18 40 40 H 1.09001 * 109.47456 * 299.99982 * 21 19 18 41 41 H 1.09000 * 109.46814 * 60.00287 * 21 19 18 42 42 H 1.07999 * 119.97724 * 179.97438 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6035 8 14 2.3224 -1.1194 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3444 -0.9489 5.1123 11 1 2.4880 -2.5653 3.7123 12 7 2.0197 -0.6925 -1.1994 13 6 1.4344 -2.0354 -1.3078 14 6 1.7529 0.0973 -2.4090 15 6 2.4774 -0.5162 -3.5794 16 6 3.7659 -0.1148 -3.8801 17 6 4.4356 -0.6780 -4.9493 18 6 3.8102 -1.6415 -5.7291 19 7 4.4837 -2.2099 -6.8149 20 6 5.7150 -2.8812 -6.3776 21 6 4.7709 -1.2007 -7.8430 22 6 2.5143 -2.0440 -5.4244 23 9 1.9035 -2.9851 -6.1770 24 6 1.8521 -1.4796 -4.3496 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7094 1.1618 3.4844 29 1 1.8664 -2.5520 -2.1648 30 1 1.6466 -2.5987 -0.3991 31 1 0.3556 -1.9520 -1.4399 32 1 2.1024 1.1190 -2.2603 33 1 0.6814 0.1053 -2.6087 34 1 4.2512 0.6373 -3.2758 35 1 5.4435 -0.3665 -5.1805 36 1 5.4662 -3.6707 -5.6684 37 1 6.3733 -2.1566 -5.8984 38 1 6.2189 -3.3148 -7.2415 39 1 5.2954 -1.6695 -8.6757 40 1 3.8358 -0.7686 -8.1993 41 1 5.3951 -0.4153 -7.4168 42 1 0.8456 -1.7908 -4.1120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132275214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:55 Heat of formation + Delta-G solvation = -17.242930 kcal Electronic energy + Delta-G solvation = -22118.102643 eV Core-core repulsion = 18819.371992 eV Total energy + Delta-G solvation = -3298.730651 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.165 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.76847 -40.88251 -39.14382 -37.39892 -34.74337 -32.10364 -31.59815 -30.05701 -28.51617 -28.18736 -27.25442 -25.87585 -24.20743 -23.56288 -21.88690 -20.97956 -18.42079 -18.05762 -17.61287 -17.42760 -17.05142 -16.69833 -16.10474 -15.64650 -15.64242 -15.36120 -15.17173 -15.07210 -14.54602 -14.37820 -13.90217 -13.54921 -13.41214 -13.19449 -13.02235 -12.91068 -12.76373 -12.71023 -12.64566 -12.50226 -12.43032 -12.20239 -12.16222 -11.99444 -11.60871 -10.92388 -10.47228 -9.89016 -9.58319 -9.49909 -8.85867 -8.09191 -6.19465 0.09358 0.22009 1.43620 1.44724 1.54533 2.42271 2.52096 2.77496 3.20205 3.27394 3.55492 3.78377 3.84477 4.11475 4.24766 4.29763 4.39641 4.45652 4.53344 4.60979 4.62877 4.66473 4.70442 4.76274 4.88373 4.89713 4.95508 4.96831 5.00602 5.12329 5.15487 5.18493 5.25894 5.52796 5.59140 5.69268 5.72502 5.80602 5.88799 6.21390 6.28683 6.47762 6.71703 6.93369 7.49613 8.96664 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.029459 B = 0.003698 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.258756 B = 7570.410250 C = 7796.157670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.215 3.785 3 H 0.012 0.988 4 C -0.512 4.512 5 H 0.054 0.946 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.536 5.536 13 C 0.039 3.961 14 C 0.091 3.909 15 C -0.044 4.044 16 C -0.101 4.101 17 C -0.114 4.114 18 C 0.044 3.956 19 N -0.525 5.525 20 C 0.027 3.973 21 C 0.028 3.972 22 C 0.102 3.898 23 F -0.141 7.141 24 C -0.146 4.146 25 H 0.061 0.939 26 H 0.026 0.974 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.020 0.980 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.138 0.862 35 H 0.150 0.850 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.042 0.958 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.121 -3.201 -18.528 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.108 3.892 3 H 0.030 0.970 4 C -0.551 4.551 5 H 0.073 0.927 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.195 1.195 12 N -0.259 5.259 13 C -0.109 4.109 14 C -0.037 4.037 15 C -0.045 4.045 16 C -0.121 4.121 17 C -0.134 4.134 18 C -0.051 4.051 19 N -0.247 5.247 20 C -0.119 4.119 21 C -0.118 4.118 22 C 0.082 3.918 23 F -0.119 7.119 24 C -0.166 4.166 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.156 0.844 35 H 0.168 0.832 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.243 -3.546 -18.605 20.278 hybrid contribution -0.566 0.226 1.289 1.426 sum 6.677 -3.320 -17.316 18.854 Atomic orbital electron populations 1.22218 1.00294 0.99271 1.00101 1.19096 0.90045 0.93076 0.86934 0.97002 1.21356 1.30439 1.12396 0.90891 0.92739 1.25640 0.95427 0.95822 1.01681 1.69998 1.37911 1.24173 1.23971 0.85583 0.77993 0.79060 0.79134 1.20268 1.21060 1.19511 1.62268 1.59013 1.02972 1.01634 1.22224 0.96352 0.91142 1.01226 1.21041 0.97204 0.97275 0.88178 1.19679 0.94897 0.95249 0.94639 1.21146 0.93553 1.00489 0.96875 1.21596 1.00852 0.95922 0.94985 1.18845 0.92954 0.97824 0.95524 1.59569 1.24779 1.30495 1.09825 1.22519 0.89133 0.98496 1.01752 1.22516 1.01528 0.93406 0.94313 1.17643 0.91465 0.90633 0.92062 1.91447 1.82817 1.62561 1.75122 1.21037 1.01570 0.98707 0.95265 0.91988 0.95495 0.94911 0.93000 0.91723 0.92781 0.96118 0.90238 0.94261 0.84392 0.83224 0.92227 0.93923 0.88923 0.89033 0.91880 0.93923 0.84657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.57 8.22 71.98 0.59 -6.98 16 2 C 0.22 10.63 2.31 44.17 0.10 10.73 16 3 H 0.01 0.65 7.93 -2.39 -0.02 0.64 16 4 C -0.51 -27.80 7.91 25.60 0.20 -27.60 16 5 H 0.05 2.98 7.12 -2.91 -0.02 2.96 16 6 C 0.01 0.69 5.30 84.66 0.45 1.14 16 7 N -0.92 -52.22 11.32 21.45 0.24 -51.97 16 8 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 9 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 N -0.54 -22.13 4.69 -906.04 -4.25 -26.38 16 13 C 0.04 1.49 8.26 127.69 1.06 2.55 16 14 C 0.09 3.09 4.69 85.56 0.40 3.49 16 15 C -0.04 -1.29 4.89 -19.84 -0.10 -1.38 16 16 C -0.10 -2.61 9.69 22.26 0.22 -2.40 16 17 C -0.11 -2.54 8.58 22.39 0.19 -2.35 16 18 C 0.04 1.07 4.74 38.21 0.18 1.25 16 19 N -0.53 -11.13 4.83 -744.80 -3.59 -14.72 16 20 C 0.03 0.46 9.34 127.69 1.19 1.65 16 21 C 0.03 0.45 9.39 127.69 1.20 1.65 16 22 C 0.10 2.87 7.31 22.48 0.16 3.03 16 23 F -0.14 -4.20 17.08 44.97 0.77 -3.44 16 24 C -0.15 -4.14 7.93 22.29 0.18 -3.96 16 25 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 26 H 0.03 1.12 6.91 -2.39 -0.02 1.10 16 27 H 0.03 1.50 6.41 -2.39 -0.02 1.49 16 28 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 29 H 0.06 2.22 6.16 -2.39 -0.01 2.20 16 30 H 0.05 2.27 6.76 -2.39 -0.02 2.26 16 31 H 0.02 0.77 6.46 -2.38 -0.02 0.75 16 32 H 0.08 2.68 7.87 -2.39 -0.02 2.66 16 33 H 0.04 1.32 7.00 -2.39 -0.02 1.31 16 34 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 35 H 0.15 2.57 7.02 -2.91 -0.02 2.55 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.04 0.63 7.11 -2.39 -0.02 0.62 16 38 H 0.09 1.17 8.12 -2.38 -0.02 1.15 16 39 H 0.09 1.08 8.12 -2.38 -0.02 1.06 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.04 0.58 7.36 -2.39 -0.02 0.56 16 42 H 0.14 3.70 8.03 -2.91 -0.02 3.68 16 Total: -1.00 -60.26 334.45 2.22 -58.04 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 1.00 Total: 12.18 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 6.03 Total: -19.17 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -7.60 Total: -93.08 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.77 Total: -3.44 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -60.26 2.22 -58.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132275214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.799 kcal (2) G-P(sol) polarization free energy of solvation -60.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds