Wall clock time and date at job start Fri Apr 10 2020 17:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47246 * 2 1 4 4 N 1.46507 * 109.46968 * 240.00197 * 2 1 3 5 5 N 1.40063 * 126.04478 * 59.69010 * 4 2 1 6 6 C 1.30853 * 108.37513 * 179.87839 * 5 4 2 7 7 C 1.39756 * 108.31818 * 0.38237 * 6 5 4 8 8 C 1.35256 * 126.04532 * 240.00250 * 4 2 1 9 9 N 1.39471 * 126.22001 * 359.94009 * 8 4 2 10 10 C 1.34774 * 120.00102 * 180.02562 * 9 8 4 11 11 O 1.21289 * 120.00404 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99835 * 180.02562 * 10 9 8 13 13 H 1.09007 * 109.47010 * 60.00058 * 12 10 9 14 14 C 1.53000 * 109.47054 * 300.00329 * 12 10 9 15 15 N 1.46500 * 109.46924 * 179.97438 * 12 10 9 16 16 C 1.46505 * 119.99685 * 60.00434 * 15 12 10 17 17 C 1.36931 * 120.00312 * 239.99836 * 15 12 10 18 18 H 1.08000 * 119.99890 * 21.82488 * 17 15 12 19 19 C 1.38811 * 120.00258 * 201.82268 * 17 15 12 20 20 N 1.31619 * 119.99966 * 11.29607 * 19 17 15 21 21 Si 1.86796 * 120.00193 * 191.29375 * 19 17 15 22 22 H 1.48500 * 109.47194 * 89.99919 * 21 19 17 23 23 H 1.48502 * 109.47498 * 210.00302 * 21 19 17 24 24 H 1.48504 * 109.47152 * 330.00352 * 21 19 17 25 25 H 1.08997 * 109.46781 * 59.99597 * 1 2 3 26 26 H 1.08999 * 109.46955 * 299.99640 * 1 2 3 27 27 H 1.08994 * 109.47339 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46781 * 120.00403 * 2 1 3 29 29 H 1.08999 * 109.47187 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47799 * 300.00421 * 3 2 1 31 31 H 1.09008 * 109.46898 * 60.00150 * 3 2 1 32 32 H 1.08002 * 125.84119 * 180.11494 * 6 5 4 33 33 H 1.07999 * 126.08623 * 179.72354 * 7 6 5 34 34 H 0.97002 * 119.99843 * 0.02562 * 9 8 4 35 35 H 1.08999 * 109.46656 * 299.99751 * 14 12 10 36 36 H 1.08993 * 109.47223 * 60.00127 * 14 12 10 37 37 H 1.09002 * 109.46639 * 180.02562 * 14 12 10 38 38 H 1.09003 * 109.46817 * 95.19371 * 16 15 12 39 39 H 1.08998 * 109.46742 * 215.19161 * 16 15 12 40 40 H 1.08995 * 109.46864 * 335.19463 * 16 15 12 41 41 H 0.97000 * 120.00405 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 -1.1963 5 7 1.7542 -0.3276 -2.5230 6 6 2.3609 -1.1774 -3.3117 7 6 3.0253 -2.1162 -2.5179 8 6 2.7991 -1.7949 -1.2147 9 7 3.2847 -2.4796 -0.1009 10 6 4.0572 -3.5717 -0.2652 11 8 4.3299 -3.9593 -1.3817 12 6 4.5814 -4.3119 0.9383 13 1 3.7442 -4.6693 1.5380 14 6 5.4459 -3.3705 1.7794 15 7 5.3876 -5.4527 0.4970 16 6 6.5774 -5.2329 -0.3291 17 6 5.0293 -6.7244 0.8568 18 1 4.0105 -6.9371 1.1453 19 6 5.9753 -7.7401 0.8506 20 7 7.2522 -7.4494 0.7182 21 14 5.4364 -9.5196 1.0301 22 1 5.1730 -10.0950 -0.3133 23 1 6.5101 -10.2969 1.6997 24 1 4.1976 -9.5817 1.8467 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 2.3467 -1.1591 -4.3915 33 1 3.6132 -2.9489 -2.8749 34 1 3.0663 -2.1699 0.7920 35 1 6.2830 -3.0131 1.1797 36 1 4.8457 -2.5220 2.1077 37 1 5.8254 -3.9061 2.6496 38 1 7.4603 -5.1925 0.3089 39 1 6.6811 -6.0512 -1.0416 40 1 6.4759 -4.2916 -0.8691 41 1 7.9134 -8.1591 0.7142 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170778259.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:07 Heat of formation + Delta-G solvation = 75.665760 kcal Electronic energy + Delta-G solvation = -22535.690760 eV Core-core repulsion = 19260.908894 eV Total energy + Delta-G solvation = -3274.781866 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.33725 -39.26297 -35.78325 -35.62740 -34.43156 -32.18197 -30.10057 -29.38337 -28.30850 -27.54624 -26.00450 -24.35783 -23.06111 -22.58352 -20.86680 -19.81095 -19.08039 -17.97646 -16.98528 -16.02476 -15.45723 -15.25629 -14.91791 -14.71032 -14.40679 -14.05020 -13.66162 -13.56524 -13.05422 -12.90140 -12.78507 -12.49529 -12.44858 -12.20065 -11.78340 -11.62602 -11.49951 -11.39424 -10.98747 -10.90717 -10.74183 -10.59207 -10.39855 -10.31707 -10.05227 -9.91466 -9.16922 -8.82804 -8.56953 -7.81237 -6.86947 -5.76430 -3.24107 1.97371 2.27708 2.98152 3.26814 3.38296 3.40156 3.44115 3.44448 4.26027 4.44564 4.65920 4.70328 5.01105 5.06135 5.26655 5.28839 5.35755 5.41137 5.45439 5.47119 5.68110 5.78263 5.83194 5.85820 5.88997 5.97644 6.10351 6.23679 6.36066 6.44921 6.72106 6.92267 6.98779 7.22960 7.48955 7.56758 7.71442 7.82875 7.98094 8.30597 8.58269 9.16989 9.77233 10.24392 11.27495 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028602 B = 0.004055 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.713269 B = 6902.695348 C = 7083.342515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.157 3.843 3 C -0.159 4.159 4 N -0.388 5.388 5 N -0.302 5.302 6 C 0.057 3.943 7 C -0.290 4.290 8 C 0.316 3.684 9 N -0.660 5.660 10 C 0.494 3.506 11 O -0.487 6.487 12 C 0.166 3.834 13 H 0.094 0.906 14 C -0.156 4.156 15 N -0.569 5.569 16 C 0.168 3.832 17 C -0.264 4.264 18 H 0.069 0.931 19 C 0.008 3.992 20 N -0.902 5.902 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.279 1.279 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.181 0.819 33 H 0.171 0.829 34 H 0.403 0.597 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.072 0.928 38 H 0.029 0.971 39 H 0.044 0.956 40 H 0.006 0.994 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.078 15.781 1.350 18.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.055 3.945 3 C -0.217 4.217 4 N -0.178 5.178 5 N -0.124 5.124 6 C -0.129 4.129 7 C -0.321 4.321 8 C 0.096 3.904 9 N -0.311 5.311 10 C 0.280 3.720 11 O -0.356 6.356 12 C 0.051 3.949 13 H 0.111 0.889 14 C -0.215 4.215 15 N -0.288 5.288 16 C 0.024 3.976 17 C -0.393 4.393 18 H 0.087 0.913 19 C -0.191 4.191 20 N -0.546 5.546 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.204 1.204 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.198 0.802 33 H 0.188 0.812 34 H 0.238 0.762 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.063 0.937 40 H 0.025 0.975 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.394 16.322 0.738 19.365 hybrid contribution 0.143 -1.493 0.466 1.571 sum -10.252 14.829 1.204 18.068 Atomic orbital electron populations 1.22119 0.93332 1.02997 1.03280 1.21155 0.95624 0.93906 0.83781 1.22116 1.01803 0.94501 1.03277 1.48783 1.41346 1.21779 1.05896 1.77282 1.25560 1.24191 0.85396 1.23723 0.96041 0.93224 0.99918 1.21712 1.13642 1.07397 0.89389 1.18353 0.94120 0.87932 0.90043 1.43792 1.51685 1.29075 1.06507 1.23447 0.76257 0.77984 0.94347 1.90586 1.54614 1.64097 1.26263 1.20212 0.95664 0.89285 0.89749 0.88854 1.22270 1.00262 0.98062 1.00946 1.43708 1.27497 1.00583 1.57033 1.20799 0.87661 0.96264 0.92900 1.19211 0.93919 0.84380 1.41761 0.91275 1.24976 0.95003 0.98609 1.00467 1.70097 0.99450 1.31225 1.53859 0.86192 0.77510 0.84586 0.77814 1.21338 1.21644 1.20443 0.90985 0.90869 0.92095 0.89136 0.92097 0.90991 0.90874 0.80212 0.81174 0.76210 0.92604 0.93910 0.90933 0.95314 0.93709 0.97514 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.45 37.16 0.35 -1.00 16 2 C 0.16 1.52 3.69 -67.93 -0.25 1.27 16 3 C -0.16 -1.34 9.46 37.15 0.35 -0.99 16 4 N -0.39 -5.28 3.28 -53.90 -0.18 -5.46 16 5 N -0.30 -4.46 12.42 30.60 0.38 -4.08 16 6 C 0.06 0.83 12.01 -17.40 -0.21 0.62 16 7 C -0.29 -4.93 9.65 -39.78 -0.38 -5.32 16 8 C 0.32 4.96 7.66 -153.17 -1.17 3.79 16 9 N -0.66 -9.67 5.31 -11.46 -0.06 -9.73 16 10 C 0.49 9.23 6.82 -10.98 -0.07 9.15 16 11 O -0.49 -10.93 11.73 5.55 0.07 -10.87 16 12 C 0.17 3.17 3.12 -69.08 -0.22 2.96 16 13 H 0.09 1.66 7.86 -51.93 -0.41 1.25 16 14 C -0.16 -2.49 9.09 37.16 0.34 -2.15 16 15 N -0.57 -14.12 2.59 -174.80 -0.45 -14.57 16 16 C 0.17 4.29 7.46 59.85 0.45 4.74 16 17 C -0.26 -7.13 9.61 -15.06 -0.14 -7.28 16 18 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 19 C 0.01 0.23 5.14 -17.43 -0.09 0.14 16 20 N -0.90 -26.02 10.54 55.49 0.59 -25.44 16 21 Si 0.91 21.70 29.57 -169.99 -5.03 16.67 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.70 6.81 -51.93 -0.35 0.35 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.18 2.01 8.06 -52.49 -0.42 1.58 16 33 H 0.17 3.28 5.83 -52.49 -0.31 2.97 16 34 H 0.40 4.40 6.94 -40.82 -0.28 4.12 16 35 H 0.05 0.96 7.67 -51.93 -0.40 0.56 16 36 H 0.04 0.50 7.56 -51.93 -0.39 0.11 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.03 0.77 7.37 -51.93 -0.38 0.39 16 39 H 0.04 1.26 7.22 -51.93 -0.37 0.89 16 40 H 0.01 0.15 6.43 -51.93 -0.33 -0.18 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 334.80 15.07 5.05 5.05 Total: -1.00 -32.91 334.80 -6.86 -39.77 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.16 Total: 2.72 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.06 Total: 5.93 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: 0.27 Total: -59.27 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.07 Total: -10.87 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.91 -6.86 -39.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170778259.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.432 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds