Wall clock time and date at job start Fri Apr 10 2020 17:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47246 * 2 1 4 4 N 1.46507 * 109.46968 * 240.00197 * 2 1 3 5 5 N 1.40063 * 126.04478 * 59.69010 * 4 2 1 6 6 C 1.30853 * 108.37513 * 179.87839 * 5 4 2 7 7 C 1.39756 * 108.31818 * 0.38237 * 6 5 4 8 8 C 1.35256 * 126.04532 * 240.00250 * 4 2 1 9 9 N 1.39471 * 126.22001 * 359.94009 * 8 4 2 10 10 C 1.34774 * 120.00102 * 180.02562 * 9 8 4 11 11 O 1.21289 * 120.00404 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99835 * 180.02562 * 10 9 8 13 13 H 1.09007 * 109.47010 * 60.00058 * 12 10 9 14 14 C 1.53000 * 109.47054 * 300.00329 * 12 10 9 15 15 N 1.46500 * 109.46924 * 179.97438 * 12 10 9 16 16 C 1.46505 * 119.99685 * 60.00434 * 15 12 10 17 17 C 1.36931 * 120.00312 * 239.99836 * 15 12 10 18 18 H 1.08000 * 119.99890 * 21.82488 * 17 15 12 19 19 C 1.38811 * 120.00258 * 201.82268 * 17 15 12 20 20 N 1.31619 * 119.99966 * 11.29607 * 19 17 15 21 21 Si 1.86796 * 120.00193 * 191.29375 * 19 17 15 22 22 H 1.48500 * 109.47194 * 89.99919 * 21 19 17 23 23 H 1.48502 * 109.47498 * 210.00302 * 21 19 17 24 24 H 1.48504 * 109.47152 * 330.00352 * 21 19 17 25 25 H 1.08997 * 109.46781 * 59.99597 * 1 2 3 26 26 H 1.08999 * 109.46955 * 299.99640 * 1 2 3 27 27 H 1.08994 * 109.47339 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46781 * 120.00403 * 2 1 3 29 29 H 1.08999 * 109.47187 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47799 * 300.00421 * 3 2 1 31 31 H 1.09008 * 109.46898 * 60.00150 * 3 2 1 32 32 H 1.08002 * 125.84119 * 180.11494 * 6 5 4 33 33 H 1.07999 * 126.08623 * 179.72354 * 7 6 5 34 34 H 0.97002 * 119.99843 * 0.02562 * 9 8 4 35 35 H 1.08999 * 109.46656 * 299.99751 * 14 12 10 36 36 H 1.08993 * 109.47223 * 60.00127 * 14 12 10 37 37 H 1.09002 * 109.46639 * 180.02562 * 14 12 10 38 38 H 1.09003 * 109.46817 * 95.19371 * 16 15 12 39 39 H 1.08998 * 109.46742 * 215.19161 * 16 15 12 40 40 H 1.08995 * 109.46864 * 335.19463 * 16 15 12 41 41 H 0.97000 * 120.00405 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 -1.1963 5 7 1.7542 -0.3276 -2.5230 6 6 2.3609 -1.1774 -3.3117 7 6 3.0253 -2.1162 -2.5179 8 6 2.7991 -1.7949 -1.2147 9 7 3.2847 -2.4796 -0.1009 10 6 4.0572 -3.5717 -0.2652 11 8 4.3299 -3.9593 -1.3817 12 6 4.5814 -4.3119 0.9383 13 1 3.7442 -4.6693 1.5380 14 6 5.4459 -3.3705 1.7794 15 7 5.3876 -5.4527 0.4970 16 6 6.5774 -5.2329 -0.3291 17 6 5.0293 -6.7244 0.8568 18 1 4.0105 -6.9371 1.1453 19 6 5.9753 -7.7401 0.8506 20 7 7.2522 -7.4494 0.7182 21 14 5.4364 -9.5196 1.0301 22 1 5.1730 -10.0950 -0.3133 23 1 6.5101 -10.2969 1.6997 24 1 4.1976 -9.5817 1.8467 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 2.3467 -1.1591 -4.3915 33 1 3.6132 -2.9489 -2.8749 34 1 3.0663 -2.1699 0.7920 35 1 6.2830 -3.0131 1.1797 36 1 4.8457 -2.5220 2.1077 37 1 5.8254 -3.9061 2.6496 38 1 7.4603 -5.1925 0.3089 39 1 6.6811 -6.0512 -1.0416 40 1 6.4759 -4.2916 -0.8691 41 1 7.9134 -8.1591 0.7142 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170778259.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:07 Heat of formation + Delta-G solvation = 54.645933 kcal Electronic energy + Delta-G solvation = -22536.602248 eV Core-core repulsion = 19260.908894 eV Total energy + Delta-G solvation = -3275.693355 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.53308 -40.72523 -37.43245 -36.62559 -35.82786 -34.01082 -31.44485 -30.81186 -29.60942 -28.19449 -28.05557 -25.93258 -24.31680 -23.96401 -22.27121 -20.95614 -20.49491 -19.11435 -18.85552 -17.55993 -16.94713 -16.68215 -16.26412 -15.83583 -15.70206 -15.42158 -15.17050 -14.76969 -14.68181 -14.22940 -13.98702 -13.87999 -13.20341 -13.17714 -13.09612 -12.97920 -12.83245 -12.71226 -12.47884 -12.33723 -12.27345 -12.22701 -12.09531 -11.89726 -11.85490 -11.52485 -10.83781 -10.55647 -9.91643 -9.08532 -8.86862 -7.83640 -5.33202 0.73148 1.14843 1.47332 1.50750 1.57801 1.66908 2.06598 2.12421 2.51378 3.31622 3.46472 3.53491 3.74096 3.95109 4.01279 4.09193 4.30872 4.35711 4.45951 4.57798 4.69440 4.77362 4.80172 4.81715 4.84453 4.90403 4.99129 5.05015 5.14684 5.23685 5.27072 5.37777 5.39435 5.61146 5.69869 5.80075 6.03455 6.24893 6.37430 6.80330 7.08892 7.17780 7.79731 8.23333 9.19779 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028602 B = 0.004055 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.713269 B = 6902.695348 C = 7083.342515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.142 3.858 3 C -0.153 4.153 4 N -0.378 5.378 5 N -0.308 5.308 6 C 0.057 3.943 7 C -0.319 4.319 8 C 0.307 3.693 9 N -0.637 5.637 10 C 0.501 3.499 11 O -0.531 6.531 12 C 0.160 3.840 13 H 0.113 0.887 14 C -0.145 4.145 15 N -0.589 5.589 16 C 0.194 3.806 17 C -0.270 4.270 18 H 0.078 0.922 19 C -0.048 4.048 20 N -0.935 5.935 21 Si 0.971 3.029 22 H -0.294 1.294 23 H -0.292 1.292 24 H -0.262 1.262 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.050 0.950 28 H 0.116 0.884 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.207 0.793 33 H 0.143 0.857 34 H 0.424 0.576 35 H 0.040 0.960 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.010 0.990 39 H 0.006 0.994 40 H 0.016 0.984 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.194 17.545 3.130 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 C -0.211 4.211 4 N -0.167 5.167 5 N -0.130 5.130 6 C -0.129 4.129 7 C -0.351 4.351 8 C 0.086 3.914 9 N -0.289 5.289 10 C 0.287 3.713 11 O -0.403 6.403 12 C 0.048 3.952 13 H 0.131 0.869 14 C -0.204 4.204 15 N -0.310 5.310 16 C 0.049 3.951 17 C -0.399 4.399 18 H 0.095 0.905 19 C -0.243 4.243 20 N -0.581 5.581 21 Si 0.799 3.201 22 H -0.221 1.221 23 H -0.219 1.219 24 H -0.186 1.186 25 H 0.076 0.924 26 H 0.123 0.877 27 H 0.069 0.931 28 H 0.133 0.867 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.123 0.877 32 H 0.224 0.776 33 H 0.161 0.839 34 H 0.263 0.737 35 H 0.059 0.941 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.028 0.972 39 H 0.025 0.975 40 H 0.035 0.965 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.583 18.171 2.574 22.252 hybrid contribution 0.687 -1.891 -0.092 2.014 sum -11.896 16.280 2.482 20.315 Atomic orbital electron populations 1.22097 0.92266 1.02590 1.04213 1.21703 0.96564 0.94658 0.82910 1.22092 1.01175 0.93646 1.04197 1.49114 1.40141 1.20865 1.06589 1.77250 1.25472 1.24204 0.86082 1.24088 0.95263 0.92293 1.01233 1.21646 1.14759 1.07768 0.90915 1.18256 0.94701 0.88766 0.89713 1.43223 1.50400 1.27784 1.07476 1.23012 0.76344 0.78660 0.93297 1.90605 1.56437 1.65617 1.27640 1.20541 0.96009 0.88492 0.90192 0.86947 1.22137 0.99895 0.98840 0.99518 1.43840 1.27852 1.01772 1.57504 1.20352 0.87925 0.94989 0.91839 1.19596 0.94192 0.85662 1.40466 0.90465 1.25753 0.95115 1.02365 1.01090 1.70248 1.00371 1.31884 1.55633 0.85216 0.77566 0.79975 0.77346 1.22093 1.21876 1.18631 0.92358 0.87650 0.93124 0.86655 0.92985 0.92380 0.87663 0.77609 0.83914 0.73716 0.94067 0.88637 0.91847 0.97201 0.97537 0.96535 0.94211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.45 71.98 0.68 -1.43 16 2 C 0.14 2.24 3.69 44.99 0.17 2.41 16 3 C -0.15 -2.06 9.46 71.98 0.68 -1.38 16 4 N -0.38 -9.45 3.28 -324.46 -1.07 -10.52 16 5 N -0.31 -8.62 12.42 -57.09 -0.71 -9.33 16 6 C 0.06 1.61 12.01 85.21 1.02 2.63 16 7 C -0.32 -10.88 9.65 22.14 0.21 -10.67 16 8 C 0.31 9.21 7.66 131.32 1.01 10.21 16 9 N -0.64 -17.20 5.31 -308.56 -1.64 -18.83 16 10 C 0.50 18.18 6.82 87.66 0.60 18.77 16 11 O -0.53 -24.23 11.73 -3.06 -0.04 -24.27 16 12 C 0.16 5.89 3.12 44.25 0.14 6.03 16 13 H 0.11 3.69 7.86 -2.38 -0.02 3.67 16 14 C -0.14 -4.28 9.09 71.98 0.65 -3.62 16 15 N -0.59 -29.40 2.59 -706.96 -1.83 -31.23 16 16 C 0.19 10.27 7.46 127.77 0.95 11.22 16 17 C -0.27 -14.60 9.61 84.03 0.81 -13.79 16 18 H 0.08 3.96 7.80 -2.91 -0.02 3.94 16 19 C -0.05 -2.67 5.14 84.86 0.44 -2.24 16 20 N -0.94 -55.51 10.54 21.65 0.23 -55.28 16 21 Si 0.97 45.00 29.57 68.60 2.03 47.03 16 22 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 24 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.12 1.25 6.81 -2.39 -0.02 1.23 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.21 4.39 8.06 -2.91 -0.02 4.37 16 33 H 0.14 5.74 5.83 -2.91 -0.02 5.73 16 34 H 0.42 7.56 6.94 -92.71 -0.64 6.91 16 35 H 0.04 1.34 7.67 -2.39 -0.02 1.32 16 36 H 0.10 1.80 7.56 -2.39 -0.02 1.78 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.01 0.55 7.37 -2.39 -0.02 0.53 16 39 H 0.01 0.35 7.22 -2.39 -0.02 0.33 16 40 H 0.02 0.81 6.43 -2.39 -0.02 0.80 16 41 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -74.37 334.80 4.72 -69.65 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.39 Total: 14.65 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 7.36 Total: 18.14 kcal Atomic # 7 Polarization: -120.19 SS G_CDS: -5.01 Total: -125.20 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.04 Total: -24.27 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -74.37 4.72 -69.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170778259.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.295 kcal (2) G-P(sol) polarization free energy of solvation -74.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds