Wall clock time and date at job start Fri Apr 10 2020 17:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46837 * 2 1 4 4 C 1.53001 * 109.47506 * 120.00304 * 2 1 3 5 5 C 1.52999 * 109.47457 * 175.00219 * 4 2 1 6 6 N 1.46495 * 109.47319 * 180.02562 * 5 4 2 7 7 C 1.34811 * 126.59569 * 125.01671 * 6 5 4 8 8 C 1.36601 * 106.83811 * 179.97438 * 7 6 5 9 9 C 1.47524 * 125.76856 * 179.97438 * 8 7 6 10 10 O 1.21593 * 120.00199 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99838 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99902 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.46665 * 35.00003 * 12 11 9 14 14 C 1.52991 * 109.47168 * 275.00095 * 12 11 9 15 15 C 1.50702 * 109.46717 * 154.99979 * 12 11 9 16 16 H 1.07995 * 120.00244 * 359.97438 * 15 12 11 17 17 C 1.37879 * 119.99486 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00421 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99566 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.46926 * 90.00099 * 19 17 15 21 21 H 1.48504 * 109.46814 * 209.99737 * 19 17 15 22 22 H 1.48491 * 109.47260 * 329.99834 * 19 17 15 23 23 N 1.34399 * 108.45907 * 0.02562 * 8 7 6 24 24 N 1.28756 * 109.52433 * 359.97438 * 23 8 7 25 25 H 1.09000 * 109.46960 * 299.99708 * 1 2 3 26 26 H 1.08997 * 109.47493 * 59.99686 * 1 2 3 27 27 H 1.08997 * 109.46951 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46960 * 240.00292 * 2 1 3 29 29 H 1.09010 * 109.46850 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47788 * 300.00127 * 3 2 1 31 31 H 1.09000 * 109.47107 * 60.00382 * 3 2 1 32 32 H 1.09005 * 109.47005 * 54.99697 * 4 2 1 33 33 H 1.09001 * 109.46752 * 294.99981 * 4 2 1 34 34 H 1.08997 * 109.47163 * 59.99718 * 5 4 2 35 35 H 1.08998 * 109.46675 * 300.00090 * 5 4 2 36 36 H 1.07993 * 126.58113 * 359.97438 * 7 6 5 37 37 H 0.96997 * 120.00057 * 0.02562 * 11 9 8 38 38 H 1.09004 * 109.47260 * 180.02562 * 14 12 11 39 39 H 1.09007 * 109.47411 * 300.00126 * 14 12 11 40 40 H 1.08999 * 109.47332 * 59.99694 * 14 12 11 41 41 H 0.96998 * 120.00417 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8310 1.1879 6 7 4.0532 -1.5222 2.3837 7 6 4.8317 -2.6224 2.4145 8 6 5.0429 -2.9210 3.7306 9 6 5.8419 -4.0513 4.2409 10 8 6.3817 -4.8144 3.4633 11 7 5.9743 -4.2375 5.5692 12 6 6.7673 -5.3603 6.0760 13 1 7.6130 -5.5369 5.4115 14 6 5.8945 -6.6154 6.1353 15 6 7.2733 -5.0345 7.4576 16 1 7.0291 -4.0860 7.9125 17 6 8.0491 -5.9472 8.1405 18 7 8.3469 -7.1021 7.5865 19 14 8.6758 -5.5437 9.8534 20 1 7.6877 -6.0022 10.8628 21 1 9.9718 -6.2321 10.0812 22 1 8.8661 -4.0763 9.9780 23 7 4.3988 -2.0117 4.4819 24 7 3.8010 -1.1665 3.7163 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9565 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6054 -1.7199 1.2951 33 1 1.7517 -0.1584 2.1369 34 1 3.9995 0.1675 1.1420 35 1 3.8532 -1.3939 0.3001 36 1 5.2147 -3.1639 1.5622 37 1 5.5439 -3.6286 6.1896 38 1 6.4844 -7.4507 6.5128 39 1 5.0486 -6.4388 6.7998 40 1 5.5284 -6.8509 5.1360 41 1 8.8929 -7.7440 8.0667 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172602274.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:10 Heat of formation + Delta-G solvation = 35.064883 kcal Electronic energy + Delta-G solvation = -21220.708111 eV Core-core repulsion = 17944.165658 eV Total energy + Delta-G solvation = -3276.542453 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.03158 -38.54558 -37.56638 -34.75951 -34.33596 -32.29293 -30.90917 -29.80196 -28.47158 -27.64491 -25.20124 -24.82073 -23.48498 -21.77181 -20.96842 -20.37696 -19.36771 -18.03819 -16.53704 -16.42312 -15.49818 -15.42419 -15.25244 -14.71906 -14.55750 -14.28678 -14.11533 -13.80902 -13.38071 -13.01486 -12.74843 -12.46333 -12.34039 -12.15222 -11.84583 -11.65555 -11.51184 -11.24384 -11.18104 -11.07783 -10.98463 -10.89187 -10.69189 -10.28143 -10.23450 -10.17186 -9.26384 -9.08734 -8.97173 -8.49804 -7.84921 -6.06591 -4.14926 1.26592 2.04813 2.07770 3.30173 3.36412 3.39932 3.93267 3.96858 4.13573 4.26075 4.35773 4.42047 4.50642 4.52020 4.75431 4.86953 5.03171 5.13948 5.17104 5.22031 5.25783 5.33228 5.38101 5.45065 5.50501 5.55227 5.72186 5.81888 5.89308 6.10125 6.41529 6.88566 7.02839 7.20039 7.48270 7.61385 7.75729 7.95608 8.12356 8.19875 8.73641 8.82963 9.13896 9.52012 10.99578 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.042123 B = 0.002821 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.560894 B = 9924.786046 C =10186.777160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.154 4.154 4 C -0.130 4.130 5 C 0.121 3.879 6 N -0.366 5.366 7 C 0.082 3.918 8 C -0.086 4.086 9 C 0.586 3.414 10 O -0.555 6.555 11 N -0.689 5.689 12 C 0.263 3.737 13 H 0.051 0.949 14 C -0.147 4.147 15 C -0.531 4.531 16 H 0.063 0.937 17 C 0.066 3.934 18 N -0.885 5.885 19 Si 0.902 3.098 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.273 1.273 23 N -0.204 5.204 24 N -0.073 5.073 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.202 0.798 37 H 0.397 0.603 38 H 0.091 0.909 39 H 0.027 0.973 40 H 0.015 0.985 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.054 14.043 -16.264 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.211 4.211 4 C -0.168 4.168 5 C 0.000 4.000 6 N -0.152 5.152 7 C -0.074 4.074 8 C -0.226 4.226 9 C 0.368 3.632 10 O -0.434 6.434 11 N -0.335 5.335 12 C 0.162 3.838 13 H 0.069 0.931 14 C -0.206 4.206 15 C -0.570 4.570 16 H 0.081 0.919 17 C -0.137 4.137 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.198 1.198 23 N -0.078 5.078 24 N -0.054 5.054 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.219 0.781 37 H 0.231 0.769 38 H 0.110 0.890 39 H 0.047 0.953 40 H 0.034 0.966 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.247 14.308 -15.838 25.121 hybrid contribution 0.575 -0.168 0.399 0.720 sum -12.672 14.140 -15.440 24.473 Atomic orbital electron populations 1.21824 0.94550 1.02047 1.02092 1.21063 0.96422 0.96391 0.97326 1.21954 1.01081 0.95778 1.02290 1.21979 0.92652 1.02311 0.99837 1.22110 0.96321 0.98457 0.83081 1.50492 1.35361 1.20497 1.08820 1.23366 0.94331 0.89468 1.00283 1.21957 1.08483 1.01821 0.90364 1.16845 0.80168 0.82340 0.83822 1.90752 1.49433 1.46430 1.56803 1.46402 1.50814 1.31371 1.04951 1.18821 0.89376 0.81232 0.94360 0.93131 1.22085 0.99305 1.01872 0.97337 1.21238 1.32712 1.02807 1.00225 0.91895 1.24879 0.95713 0.94804 0.98324 1.69900 1.37378 1.07243 1.37738 0.86433 0.78197 0.78550 0.83850 1.20539 1.21128 1.19812 1.74653 1.05458 1.01063 1.26595 1.81907 1.21318 1.19496 0.82638 0.92400 0.92401 0.92516 0.90791 0.92474 0.92414 0.92223 0.90912 0.89894 0.88437 0.87958 0.78136 0.76919 0.89024 0.95346 0.96573 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.19 37.16 0.34 -0.41 16 2 C -0.09 -0.46 2.92 -90.62 -0.26 -0.72 16 3 C -0.15 -0.72 8.95 37.16 0.33 -0.38 16 4 C -0.13 -0.86 4.89 -26.73 -0.13 -0.99 16 5 C 0.12 0.84 6.30 -4.05 -0.03 0.82 16 6 N -0.37 -4.32 3.69 -61.07 -0.23 -4.55 16 7 C 0.08 1.10 11.27 -16.83 -0.19 0.91 16 8 C -0.09 -1.53 6.99 -83.55 -0.58 -2.11 16 9 C 0.59 12.64 7.78 -12.47 -0.10 12.55 16 10 O -0.56 -13.34 16.52 5.28 0.09 -13.25 16 11 N -0.69 -15.73 5.07 -55.98 -0.28 -16.01 16 12 C 0.26 6.96 2.56 -69.08 -0.18 6.78 16 13 H 0.05 1.50 7.57 -51.93 -0.39 1.11 16 14 C -0.15 -3.77 9.26 37.15 0.34 -3.43 16 15 C -0.53 -14.58 8.73 -34.44 -0.30 -14.88 16 16 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 17 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 18 N -0.88 -25.27 11.32 55.43 0.63 -24.64 16 19 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 N -0.20 -3.61 12.04 32.85 0.40 -3.21 16 24 N -0.07 -1.12 13.65 60.35 0.82 -0.30 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.24 6.57 -51.92 -0.34 -0.10 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.58 6.57 -51.93 -0.34 0.24 16 35 H 0.10 0.45 8.08 -51.93 -0.42 0.03 16 36 H 0.20 2.07 8.06 -52.49 -0.42 1.65 16 37 H 0.40 8.47 8.23 -40.82 -0.34 8.14 16 38 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 39 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 345.89 15.07 5.21 5.21 Total: -1.00 -32.39 345.89 -5.57 -37.95 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.34 Total: 2.82 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -0.85 Total: -0.17 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 1.34 Total: -48.71 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.39 -5.57 -37.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172602274.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.018 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds