Wall clock time and date at job start Fri Apr 10 2020 17:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46837 * 2 1 4 4 C 1.53001 * 109.47506 * 120.00304 * 2 1 3 5 5 C 1.52999 * 109.47457 * 175.00219 * 4 2 1 6 6 N 1.46495 * 109.47319 * 180.02562 * 5 4 2 7 7 C 1.34811 * 126.59569 * 125.01671 * 6 5 4 8 8 C 1.36601 * 106.83811 * 179.97438 * 7 6 5 9 9 C 1.47524 * 125.76856 * 179.97438 * 8 7 6 10 10 O 1.21593 * 120.00199 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99838 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99902 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.46665 * 35.00003 * 12 11 9 14 14 C 1.52991 * 109.47168 * 275.00095 * 12 11 9 15 15 C 1.50702 * 109.46717 * 154.99979 * 12 11 9 16 16 H 1.07995 * 120.00244 * 359.97438 * 15 12 11 17 17 C 1.37879 * 119.99486 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00421 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99566 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.46926 * 90.00099 * 19 17 15 21 21 H 1.48504 * 109.46814 * 209.99737 * 19 17 15 22 22 H 1.48491 * 109.47260 * 329.99834 * 19 17 15 23 23 N 1.34399 * 108.45907 * 0.02562 * 8 7 6 24 24 N 1.28756 * 109.52433 * 359.97438 * 23 8 7 25 25 H 1.09000 * 109.46960 * 299.99708 * 1 2 3 26 26 H 1.08997 * 109.47493 * 59.99686 * 1 2 3 27 27 H 1.08997 * 109.46951 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46960 * 240.00292 * 2 1 3 29 29 H 1.09010 * 109.46850 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47788 * 300.00127 * 3 2 1 31 31 H 1.09000 * 109.47107 * 60.00382 * 3 2 1 32 32 H 1.09005 * 109.47005 * 54.99697 * 4 2 1 33 33 H 1.09001 * 109.46752 * 294.99981 * 4 2 1 34 34 H 1.08997 * 109.47163 * 59.99718 * 5 4 2 35 35 H 1.08998 * 109.46675 * 300.00090 * 5 4 2 36 36 H 1.07993 * 126.58113 * 359.97438 * 7 6 5 37 37 H 0.96997 * 120.00057 * 0.02562 * 11 9 8 38 38 H 1.09004 * 109.47260 * 180.02562 * 14 12 11 39 39 H 1.09007 * 109.47411 * 300.00126 * 14 12 11 40 40 H 1.08999 * 109.47332 * 59.99694 * 14 12 11 41 41 H 0.96998 * 120.00417 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8310 1.1879 6 7 4.0532 -1.5222 2.3837 7 6 4.8317 -2.6224 2.4145 8 6 5.0429 -2.9210 3.7306 9 6 5.8419 -4.0513 4.2409 10 8 6.3817 -4.8144 3.4633 11 7 5.9743 -4.2375 5.5692 12 6 6.7673 -5.3603 6.0760 13 1 7.6130 -5.5369 5.4115 14 6 5.8945 -6.6154 6.1353 15 6 7.2733 -5.0345 7.4576 16 1 7.0291 -4.0860 7.9125 17 6 8.0491 -5.9472 8.1405 18 7 8.3469 -7.1021 7.5865 19 14 8.6758 -5.5437 9.8534 20 1 7.6877 -6.0022 10.8628 21 1 9.9718 -6.2321 10.0812 22 1 8.8661 -4.0763 9.9780 23 7 4.3988 -2.0117 4.4819 24 7 3.8010 -1.1665 3.7163 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9565 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6054 -1.7199 1.2951 33 1 1.7517 -0.1584 2.1369 34 1 3.9995 0.1675 1.1420 35 1 3.8532 -1.3939 0.3001 36 1 5.2147 -3.1639 1.5622 37 1 5.5439 -3.6286 6.1896 38 1 6.4844 -7.4507 6.5128 39 1 5.0486 -6.4388 6.7998 40 1 5.5284 -6.8509 5.1360 41 1 8.8929 -7.7440 8.0667 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172602274.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:10 Heat of formation + Delta-G solvation = 12.983880 kcal Electronic energy + Delta-G solvation = -21221.665615 eV Core-core repulsion = 17944.165658 eV Total energy + Delta-G solvation = -3277.499957 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.20255 -40.27998 -38.12566 -36.72932 -35.24836 -34.26718 -32.18496 -31.02648 -29.95462 -28.01539 -27.33258 -25.58819 -24.98950 -22.77083 -22.62168 -21.19770 -20.79027 -19.50697 -18.10180 -17.29013 -17.17157 -17.00340 -16.27794 -16.12247 -15.70408 -15.48335 -15.03914 -14.80504 -14.71634 -14.38053 -13.97337 -13.70224 -13.37947 -13.13705 -13.01607 -12.86429 -12.79365 -12.72322 -12.61404 -12.27943 -12.15344 -12.10874 -12.03028 -11.68637 -11.52352 -11.13478 -11.10548 -11.02923 -10.59235 -10.33413 -9.74143 -8.16839 -6.33640 0.17618 0.68744 1.12872 1.45757 1.46377 1.57391 2.33060 2.37599 2.55406 3.13206 3.25584 3.39595 3.76002 3.85424 3.96775 4.01936 4.04157 4.27299 4.36140 4.46262 4.64235 4.75194 4.77723 4.83804 4.92253 4.94684 4.99923 5.05647 5.08968 5.09413 5.30862 5.42154 5.42747 5.48437 5.53225 5.59376 5.68494 5.88693 6.09765 6.71843 6.77189 7.03164 7.29252 7.45227 8.89601 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.042123 B = 0.002821 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.560894 B = 9924.786046 C =10186.777160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.155 4.155 4 C -0.125 4.125 5 C 0.109 3.891 6 N -0.346 5.346 7 C 0.109 3.891 8 C -0.120 4.120 9 C 0.588 3.412 10 O -0.586 6.586 11 N -0.693 5.693 12 C 0.270 3.730 13 H 0.008 0.992 14 C -0.134 4.134 15 C -0.550 4.550 16 H 0.067 0.933 17 C 0.017 3.983 18 N -0.914 5.914 19 Si 0.972 3.028 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.268 1.268 23 N -0.228 5.228 24 N -0.084 5.084 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.237 0.763 37 H 0.404 0.596 38 H 0.071 0.929 39 H 0.036 0.964 40 H 0.017 0.983 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.622 15.476 -17.429 26.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 C -0.212 4.212 4 C -0.163 4.163 5 C -0.009 4.009 6 N -0.131 5.131 7 C -0.049 4.049 8 C -0.260 4.260 9 C 0.373 3.627 10 O -0.467 6.467 11 N -0.340 5.340 12 C 0.167 3.833 13 H 0.026 0.974 14 C -0.193 4.193 15 C -0.588 4.588 16 H 0.085 0.915 17 C -0.183 4.183 18 N -0.552 5.552 19 Si 0.797 3.203 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.192 1.192 23 N -0.102 5.102 24 N -0.065 5.065 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.253 0.747 37 H 0.239 0.761 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.036 0.964 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.858 15.792 -17.023 27.040 hybrid contribution 0.680 -0.539 0.601 1.055 sum -13.178 15.253 -16.422 26.000 Atomic orbital electron populations 1.21845 0.94879 1.01895 1.02120 1.21030 0.96100 0.96472 0.96889 1.21967 1.01562 0.95496 1.02170 1.21927 0.92463 1.01831 1.00082 1.22692 0.96410 0.99635 0.82178 1.50813 1.33717 1.19630 1.08948 1.23777 0.92605 0.88977 0.99534 1.21484 1.10477 1.01894 0.92152 1.17241 0.79661 0.82882 0.82924 1.90719 1.50777 1.47916 1.57245 1.46203 1.50959 1.30881 1.05963 1.18459 0.88713 0.82736 0.93346 0.97365 1.21907 0.99002 1.00926 0.97430 1.21511 1.33324 1.03197 1.00747 0.91476 1.25757 0.95689 0.94547 1.02316 1.70029 1.37746 1.08109 1.39350 0.85341 0.77647 0.78468 0.78854 1.19625 1.20767 1.19227 1.74625 1.06179 1.01587 1.27797 1.81821 1.21237 1.19200 0.84198 0.93239 0.91561 0.92773 0.89115 0.91695 0.91739 0.93222 0.91661 0.91736 0.86745 0.84173 0.74714 0.76121 0.90984 0.94477 0.96371 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.19 71.98 0.66 -0.61 16 2 C -0.09 -0.61 2.92 -10.79 -0.03 -0.65 16 3 C -0.15 -1.06 8.95 71.98 0.64 -0.41 16 4 C -0.12 -1.37 4.89 30.59 0.15 -1.22 16 5 C 0.11 1.13 6.30 86.38 0.54 1.67 16 6 N -0.35 -7.27 3.69 -347.12 -1.28 -8.55 16 7 C 0.11 2.66 11.27 83.85 0.95 3.61 16 8 C -0.12 -4.17 6.99 40.82 0.29 -3.89 16 9 C 0.59 25.71 7.78 86.69 0.67 26.39 16 10 O -0.59 -28.58 16.52 -4.01 -0.07 -28.65 16 11 N -0.69 -32.39 5.07 -449.28 -2.28 -34.66 16 12 C 0.27 14.70 2.56 44.24 0.11 14.82 16 13 H 0.01 0.53 7.57 -2.39 -0.02 0.51 16 14 C -0.13 -7.02 9.26 71.98 0.67 -6.35 16 15 C -0.55 -30.59 8.73 25.60 0.22 -30.37 16 16 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 17 C 0.02 0.95 5.30 84.66 0.45 1.40 16 18 N -0.91 -53.03 11.32 21.45 0.24 -52.79 16 19 Si 0.97 43.37 29.54 68.60 2.03 45.39 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 N -0.23 -7.98 12.04 -49.99 -0.60 -8.59 16 24 N -0.08 -2.47 13.65 37.02 0.51 -1.96 16 25 H 0.05 0.49 8.14 -2.39 -0.02 0.48 16 26 H 0.07 0.45 8.14 -2.39 -0.02 0.44 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.47 16 28 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.34 6.57 -2.38 -0.02 0.33 16 30 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.11 0.91 6.57 -2.39 -0.02 0.90 16 35 H 0.14 0.50 8.08 -2.39 -0.02 0.48 16 36 H 0.24 3.97 8.06 -2.91 -0.02 3.95 16 37 H 0.40 17.61 8.23 -92.71 -0.76 16.84 16 38 H 0.07 4.06 6.07 -2.38 -0.01 4.04 16 39 H 0.04 1.81 8.14 -2.38 -0.02 1.80 16 40 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -71.73 345.89 4.14 -67.59 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.26 Total: 17.85 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 5.33 Total: 4.38 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -3.41 Total: -106.56 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.07 Total: -28.65 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -71.73 4.14 -67.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172602274.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.573 kcal (2) G-P(sol) polarization free energy of solvation -71.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds