Wall clock time and date at job start Fri Apr 10 2020 17:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.53004 * 109.47083 * 174.99797 * 3 2 1 6 6 N 1.46502 * 109.46925 * 175.00128 * 5 3 2 7 7 C 1.34775 * 119.99947 * 180.02562 * 6 5 3 8 8 O 1.21603 * 120.00077 * 359.97438 * 7 6 5 9 9 C 1.47407 * 120.00177 * 179.97438 * 7 6 5 10 10 N 1.31623 * 125.86143 * 0.02562 * 9 7 6 11 11 C 1.33100 * 109.09181 * 179.97438 * 10 9 7 12 12 C 1.35563 * 108.35291 * 359.97438 * 11 10 9 13 13 N 1.35407 * 107.15749 * 359.77328 * 12 11 10 14 14 C 1.46499 * 126.43489 * 180.24102 * 13 12 11 15 15 C 1.53001 * 109.46885 * 265.14197 * 14 13 12 16 16 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 17 17 C 1.36943 * 119.99752 * 84.72207 * 16 3 2 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 3 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 3 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47213 * 60.00246 * 21 19 17 23 23 H 1.48502 * 109.47317 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47081 * 299.99875 * 21 19 17 25 25 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 26 26 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 28 28 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 29 29 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 30 30 H 1.08997 * 109.47038 * 294.99798 * 5 3 2 31 31 H 1.08999 * 109.47047 * 55.00424 * 5 3 2 32 32 H 0.96997 * 120.00059 * 359.97438 * 6 5 3 33 33 H 1.07998 * 125.81910 * 180.02562 * 11 10 9 34 34 H 1.07997 * 126.41698 * 180.02562 * 12 11 10 35 35 H 1.09000 * 109.47595 * 25.14446 * 14 13 12 36 36 H 1.08997 * 109.47010 * 145.14593 * 14 13 12 37 37 H 1.09006 * 109.46719 * 180.02562 * 15 14 13 38 38 H 1.08996 * 109.47236 * 299.99992 * 15 14 13 39 39 H 1.09003 * 109.47326 * 60.00573 * 15 14 13 40 40 H 0.97001 * 120.00384 * 265.00562 * 16 3 2 41 41 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0859 8 8 6.1655 2.1458 0.2579 9 6 5.8871 4.4438 -0.0351 10 7 5.1500 5.5182 -0.2216 11 6 5.9432 6.5853 -0.2813 12 6 7.2255 6.1733 -0.1271 13 7 7.1965 4.8290 0.0335 14 6 8.3520 3.9522 0.2388 15 6 8.8015 3.3777 -1.1061 16 7 1.6525 2.0975 -1.2518 17 6 0.4135 2.6685 -1.3707 18 1 -0.2763 2.6399 -0.5402 19 6 0.0441 3.2841 -2.5588 20 7 0.8846 3.3185 -3.5712 21 14 -1.6456 4.0637 -2.7208 22 1 -1.7977 5.1322 -1.7008 23 1 -1.7926 4.6494 -4.0775 24 1 -2.6902 3.0288 -2.5132 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.8498 1.0377 1.0961 31 1 3.9954 0.8311 -0.6659 32 1 3.4410 3.5482 -0.1315 33 1 5.6203 7.6055 -0.4270 34 1 8.1048 6.8002 -0.1276 35 1 9.1680 4.5239 0.6808 36 1 8.0753 3.1373 0.9077 37 1 9.6610 2.7249 -0.9532 38 1 7.9855 2.8060 -1.5480 39 1 9.0782 4.1927 -1.7751 40 1 2.2719 2.1231 -1.9978 41 1 0.6267 3.7490 -4.4012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753474178.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:04 Heat of formation + Delta-G solvation = 28.883252 kcal Electronic energy + Delta-G solvation = -22210.101744 eV Core-core repulsion = 18933.291236 eV Total energy + Delta-G solvation = -3276.810508 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.18568 -39.03916 -36.66996 -35.13850 -33.59644 -32.31228 -30.47789 -29.89187 -29.50098 -27.70897 -24.44287 -23.74760 -22.94703 -21.90845 -21.14217 -20.11169 -19.43682 -17.78090 -17.08481 -16.15699 -15.76049 -15.54529 -15.15874 -14.65236 -14.28972 -13.97350 -13.84876 -13.77036 -13.45041 -13.11999 -12.95804 -12.74287 -12.55610 -12.18114 -12.10633 -11.47163 -11.41490 -10.90609 -10.81669 -10.71036 -10.41081 -10.16450 -10.07221 -10.00892 -9.87036 -9.73776 -9.47311 -8.88768 -8.77742 -8.38795 -6.96598 -5.73522 -3.02799 1.50891 2.51151 2.75126 3.46461 3.51541 3.52137 3.57272 3.66823 4.52940 4.57001 4.61428 4.83328 4.88010 5.11929 5.31605 5.40999 5.43724 5.49120 5.51498 5.60541 5.65236 5.95146 5.96874 5.98284 5.99760 6.13155 6.25395 6.45662 6.56021 6.60708 6.62588 6.67110 6.86875 6.96925 7.05008 7.28672 7.72936 7.74812 8.09217 8.43034 8.47083 9.55256 10.09607 10.45215 11.48381 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.017232 B = 0.004825 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.482467 B = 5801.779487 C = 6912.771814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.055 0.945 5 C 0.115 3.885 6 N -0.683 5.683 7 C 0.602 3.398 8 O -0.557 6.557 9 C 0.146 3.854 10 N -0.436 5.436 11 C -0.027 4.027 12 C -0.038 4.038 13 N -0.417 5.417 14 C 0.098 3.902 15 C -0.163 4.163 16 N -0.720 5.720 17 C -0.238 4.238 18 H 0.072 0.928 19 C -0.009 4.009 20 N -0.929 5.929 21 Si 0.903 3.097 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.287 1.287 25 H 0.085 0.915 26 H 0.032 0.968 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.423 0.577 33 H 0.176 0.824 34 H 0.179 0.821 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.385 0.615 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.345 1.660 8.411 16.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.073 0.927 5 C -0.009 4.009 6 N -0.334 5.334 7 C 0.385 3.615 8 O -0.436 6.436 9 C -0.113 4.113 10 N -0.157 5.157 11 C -0.181 4.181 12 C -0.176 4.176 13 N -0.098 5.098 14 C -0.024 4.024 15 C -0.221 4.221 16 N -0.362 5.362 17 C -0.369 4.369 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.576 5.576 21 Si 0.734 3.266 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.214 1.214 25 H 0.104 0.896 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.262 0.738 33 H 0.193 0.807 34 H 0.197 0.803 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.219 0.781 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.957 0.904 8.501 16.367 hybrid contribution -0.090 0.960 -0.518 1.095 sum 13.866 1.864 7.983 16.108 Atomic orbital electron populations 1.21772 0.95681 0.99595 1.03342 1.22068 0.97031 0.98317 0.99977 1.20568 0.89627 0.92911 0.91678 0.92705 1.21777 0.95980 0.81822 1.01300 1.45702 1.06236 1.11535 1.69927 1.16463 0.83278 0.84249 0.77493 1.90744 1.56223 1.44510 1.52088 1.22784 0.80630 0.95875 1.12057 1.70325 1.32948 0.97459 1.14966 1.22442 0.88925 0.98713 1.08005 1.22844 1.01203 0.83795 1.09787 1.45276 1.07508 1.07207 1.49796 1.22070 0.85832 0.94356 1.00136 1.22070 1.02614 1.01468 0.95963 1.42430 1.16679 1.65948 1.11176 1.19136 0.91690 1.28229 0.97823 0.90961 1.24721 0.97985 1.01466 0.96395 1.69654 1.35166 1.48933 1.03875 0.86336 0.84260 0.79238 0.76742 1.21238 1.21845 1.21365 0.89583 0.94919 0.94099 0.92514 0.93868 0.91521 0.91484 0.73836 0.80713 0.80336 0.89324 0.87290 0.90543 0.91085 0.92368 0.78076 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.17 37.15 0.34 -2.30 16 2 C -0.13 -2.30 5.61 -26.74 -0.15 -2.45 16 3 C 0.16 3.07 2.59 -67.93 -0.18 2.90 16 4 H 0.06 1.05 8.08 -51.93 -0.42 0.64 16 5 C 0.12 1.99 5.23 -4.04 -0.02 1.97 16 6 N -0.68 -12.48 5.38 -61.39 -0.33 -12.81 16 7 C 0.60 10.83 7.81 -12.53 -0.10 10.73 16 8 O -0.56 -10.25 14.49 5.27 0.08 -10.17 16 9 C 0.15 2.47 7.78 -154.52 -1.20 1.27 16 10 N -0.44 -7.67 10.90 -11.26 -0.12 -7.80 16 11 C -0.03 -0.38 11.85 -17.96 -0.21 -0.59 16 12 C -0.04 -0.44 11.53 -16.93 -0.20 -0.63 16 13 N -0.42 -5.56 2.76 -114.59 -0.32 -5.88 16 14 C 0.10 1.02 6.17 -4.04 -0.02 0.99 16 15 C -0.16 -1.66 10.23 37.16 0.38 -1.28 16 16 N -0.72 -16.91 4.51 -53.43 -0.24 -17.15 16 17 C -0.24 -6.20 7.74 -15.06 -0.12 -6.32 16 18 H 0.07 1.83 7.31 -52.49 -0.38 1.45 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -27.53 13.06 55.49 0.72 -26.80 16 21 Si 0.90 22.07 29.55 -169.99 -5.02 17.04 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H 0.09 1.84 5.97 -51.93 -0.31 1.53 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.42 8.41 7.82 -40.82 -0.32 8.09 16 33 H 0.18 1.90 8.06 -52.49 -0.42 1.47 16 34 H 0.18 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.09 0.63 8.13 -51.93 -0.42 0.21 16 36 H 0.11 1.28 6.64 -51.93 -0.35 0.94 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.94 7.84 -51.93 -0.41 0.53 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.39 9.95 7.80 -40.82 -0.32 9.63 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 342.36 15.07 5.16 5.16 Total: -1.00 -31.14 342.36 -7.93 -39.07 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -6.29 Total: 15.40 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.57 Total: 3.94 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: -0.29 Total: -70.44 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.14 -7.93 -39.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753474178.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.955 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds