Wall clock time and date at job start Fri Apr 10 2020 17:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46734 * 2 1 4 4 C 1.52994 * 109.47234 * 119.99741 * 2 1 3 5 5 C 1.53003 * 109.47306 * 65.00197 * 4 2 1 6 6 H 1.09002 * 109.46892 * 305.00508 * 5 4 2 7 7 C 1.52996 * 109.47530 * 184.99714 * 5 4 2 8 8 N 1.46498 * 109.47059 * 184.99929 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47159 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47290 * 120.00044 * 13 11 9 16 16 H 1.48503 * 109.47163 * 240.00049 * 13 11 9 17 17 N 1.46506 * 109.46609 * 64.99913 * 5 4 2 18 18 C 1.34782 * 119.99726 * 274.99704 * 17 5 4 19 19 O 1.21567 * 119.99951 * 0.02562 * 18 17 5 20 20 C 1.47716 * 119.99527 * 180.02562 * 18 17 5 21 21 C 1.41499 * 126.51260 * 180.02562 * 20 18 17 22 22 C 1.35368 * 105.49901 * 179.97438 * 21 20 18 23 23 N 1.35029 * 107.22968 * 359.97438 * 22 21 20 24 24 H 0.96997 * 124.88269 * 180.02562 * 23 22 21 25 25 N 1.28473 * 110.23197 * 359.75024 * 23 22 21 26 26 H 1.08998 * 109.47054 * 60.00135 * 1 2 3 27 27 H 1.09006 * 109.46792 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47460 * 299.99649 * 1 2 3 29 29 H 1.08994 * 109.47074 * 240.00325 * 2 1 3 30 30 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47138 * 300.00296 * 3 2 1 32 32 H 1.09007 * 109.46990 * 60.00343 * 3 2 1 33 33 H 1.09001 * 109.47619 * 305.00285 * 4 2 1 34 34 H 1.09003 * 109.47243 * 184.99947 * 4 2 1 35 35 H 1.09004 * 109.47066 * 65.00196 * 7 5 4 36 36 H 1.08994 * 109.46974 * 305.00344 * 7 5 4 37 37 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 38 38 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 39 39 H 0.97000 * 120.00390 * 95.00648 * 17 5 4 40 40 H 1.08001 * 127.25074 * 0.02562 * 21 20 18 41 41 H 1.08007 * 126.38426 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6354 -2.1954 1.1880 6 1 0.5564 -2.2707 1.0527 7 6 2.0355 -2.8888 2.4918 8 7 1.7571 -4.3233 2.3875 9 6 2.0409 -5.1540 3.4385 10 1 2.4659 -4.7510 4.3459 11 6 1.7825 -6.5141 3.3375 12 7 1.2651 -7.0053 2.2314 13 14 2.1690 -7.6472 4.7714 14 1 2.7391 -6.8538 5.8896 15 1 0.9225 -8.3154 5.2243 16 1 3.1521 -8.6734 4.3403 17 7 2.3149 -2.8420 0.0626 18 6 1.7815 -2.7778 -1.1735 19 8 0.7369 -2.1831 -1.3546 20 6 2.4665 -3.4302 -2.3081 21 6 2.0331 -3.4492 -3.6550 22 6 2.9709 -4.1573 -4.3268 23 7 3.9060 -4.5353 -3.4290 24 1 4.6966 -5.0570 -3.6378 25 7 3.6009 -4.0995 -2.2596 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9564 0.8901 33 1 1.6054 -0.2617 2.1370 34 1 3.1264 -0.6443 1.2951 35 1 1.4634 -2.4668 3.3182 36 1 3.0998 -2.7373 2.6720 37 1 1.3758 -4.6853 1.5724 38 1 1.0841 -7.9557 2.1610 39 1 3.1486 -3.3163 0.2071 40 1 1.1421 -2.9937 -4.0615 41 1 2.9712 -4.3788 -5.3839 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753733199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:09 Heat of formation + Delta-G solvation = 15.254476 kcal Electronic energy + Delta-G solvation = -22507.132139 eV Core-core repulsion = 19229.730643 eV Total energy + Delta-G solvation = -3277.401496 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.49798 -40.88930 -37.92731 -36.43038 -35.00854 -33.23862 -32.54751 -31.62179 -30.42627 -27.91722 -27.17698 -25.42183 -24.47224 -22.65152 -22.00132 -21.03837 -20.72768 -19.44106 -19.15221 -17.98206 -17.11437 -16.97447 -16.56384 -16.19201 -15.52928 -15.29374 -15.00020 -14.71414 -14.58291 -14.49105 -14.29860 -14.05895 -13.61219 -13.19340 -12.99659 -12.93764 -12.82321 -12.52314 -12.32152 -12.04653 -11.90466 -11.85567 -11.60549 -11.37182 -11.22991 -11.01246 -10.90268 -10.37078 -10.09688 -9.83786 -9.00186 -7.93440 -5.23173 0.64264 1.30467 1.47361 1.48457 1.58595 2.02698 2.41280 2.52489 2.56670 3.40642 3.53844 3.70009 4.00165 4.10955 4.13147 4.26863 4.30600 4.41310 4.45425 4.69452 4.80397 4.82284 4.84245 4.91479 4.92301 4.95269 5.01985 5.12570 5.19503 5.26012 5.40920 5.42142 5.51289 5.60777 5.65269 5.71992 6.23606 6.26927 6.59779 6.96601 7.32211 7.33833 8.08192 8.31956 9.30035 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.005826 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.111028 B = 4804.610262 C = 6542.312037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.091 4.091 3 C -0.139 4.139 4 C -0.113 4.113 5 C 0.145 3.855 6 H 0.070 0.930 7 C 0.144 3.856 8 N -0.743 5.743 9 C -0.242 4.242 10 H 0.080 0.920 11 C -0.076 4.076 12 N -0.970 5.970 13 Si 0.975 3.025 14 H -0.264 1.264 15 H -0.296 1.296 16 H -0.294 1.294 17 N -0.696 5.696 18 C 0.595 3.405 19 O -0.550 6.550 20 C -0.042 4.042 21 C -0.209 4.209 22 C 0.012 3.988 23 N -0.370 5.370 24 H 0.462 0.538 25 N -0.282 5.282 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.041 0.959 36 H 0.035 0.965 37 H 0.373 0.627 38 H 0.249 0.751 39 H 0.406 0.594 40 H 0.165 0.835 41 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.229 11.778 -13.051 18.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.109 4.109 3 C -0.197 4.197 4 C -0.152 4.152 5 C 0.040 3.960 6 H 0.088 0.912 7 C 0.018 3.982 8 N -0.385 5.385 9 C -0.373 4.373 10 H 0.098 0.902 11 C -0.268 4.268 12 N -0.621 5.621 13 Si 0.804 3.196 14 H -0.188 1.188 15 H -0.223 1.223 16 H -0.221 1.221 17 N -0.346 5.346 18 C 0.380 3.620 19 O -0.428 6.428 20 C -0.202 4.202 21 C -0.237 4.237 22 C -0.133 4.133 23 N -0.087 5.087 24 H 0.310 0.690 25 N -0.120 5.120 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.205 0.795 38 H 0.058 0.942 39 H 0.241 0.759 40 H 0.182 0.818 41 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 6.346 11.881 -12.205 18.176 hybrid contribution -0.050 -1.432 -0.165 1.442 sum 6.296 10.449 -12.370 17.373 Atomic orbital electron populations 1.21756 0.95452 1.01469 1.00308 1.21078 0.96107 0.96191 0.97561 1.21800 1.00732 0.95193 1.01952 1.21962 1.01559 0.92469 0.99175 1.21267 0.97216 0.92744 0.84748 0.91200 1.21128 0.98392 0.83911 0.94816 1.42538 1.76332 1.02920 1.16750 1.19699 1.33225 0.89445 0.94957 0.90216 1.25584 1.02653 0.98619 0.99989 1.69867 1.51640 1.12401 1.28201 0.85051 0.76759 0.78769 0.79022 1.18779 1.22338 1.22137 1.45821 1.27075 1.54831 1.06847 1.17176 0.83893 0.78902 0.82003 1.90738 1.23241 1.44219 1.84580 1.22089 0.95966 1.05865 0.96237 1.22042 1.03625 1.06778 0.91293 1.23592 0.90139 1.00396 0.99176 1.43501 1.21841 1.39591 1.03737 0.69033 1.73546 1.16497 1.14008 1.07941 0.93739 0.93290 0.92920 0.92708 0.92660 0.92789 0.91903 0.89613 0.90961 0.94135 0.94691 0.79513 0.94229 0.75922 0.81787 0.74842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 8.03 71.98 0.58 -3.33 16 2 C -0.09 -2.53 2.38 -10.79 -0.03 -2.56 16 3 C -0.14 -3.08 9.19 71.98 0.66 -2.41 16 4 C -0.11 -3.15 4.36 30.59 0.13 -3.02 16 5 C 0.14 5.11 2.33 44.99 0.10 5.21 16 6 H 0.07 2.80 5.92 -2.39 -0.01 2.78 16 7 C 0.14 5.77 5.82 86.38 0.50 6.27 16 8 N -0.74 -38.37 5.43 -343.46 -1.87 -40.23 16 9 C -0.24 -13.58 9.99 84.03 0.84 -12.74 16 10 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 11 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 12 N -0.97 -60.94 13.06 21.65 0.28 -60.66 16 13 Si 0.97 46.71 29.55 68.60 2.03 48.74 16 14 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 15 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 16 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 17 N -0.70 -25.19 4.47 -445.51 -1.99 -27.18 16 18 C 0.59 21.99 6.38 86.75 0.55 22.54 16 19 O -0.55 -21.72 11.88 -3.93 -0.05 -21.77 16 20 C -0.04 -1.37 7.13 42.46 0.30 -1.06 16 21 C -0.21 -5.35 10.81 22.41 0.24 -5.11 16 22 C 0.01 0.20 12.02 83.54 1.00 1.20 16 23 N -0.37 -7.19 6.83 -57.51 -0.39 -7.58 16 24 H 0.46 5.08 8.96 -219.99 -1.97 3.11 16 25 N -0.28 -8.42 11.92 -48.18 -0.57 -9.00 16 26 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.05 1.72 4.75 -2.38 -0.01 1.71 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.05 1.78 5.19 -2.39 -0.01 1.77 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.37 21.14 7.33 -92.71 -0.68 20.46 16 38 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.41 15.06 8.33 -92.71 -0.77 14.29 16 40 H 0.16 3.91 8.06 -2.91 -0.02 3.88 16 41 H 0.24 1.24 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -74.33 334.43 0.45 -73.88 By element: Atomic # 1 Polarization: 45.14 SS G_CDS: -2.36 Total: 42.79 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 5.36 Total: 1.01 kcal Atomic # 7 Polarization: -140.11 SS G_CDS: -4.54 Total: -144.65 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.05 Total: -21.77 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -74.33 0.45 -73.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753733199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.136 kcal (2) G-P(sol) polarization free energy of solvation -74.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds