Wall clock time and date at job start Fri Apr 10 2020 17:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46818 * 2 1 4 4 C 1.52997 * 109.47241 * 120.00077 * 2 1 3 5 5 H 1.09004 * 109.46812 * 60.00212 * 4 2 1 6 6 C 1.52999 * 109.47114 * 300.00025 * 4 2 1 7 7 N 1.46500 * 109.47226 * 184.99495 * 6 4 2 8 8 C 1.34776 * 119.99923 * 180.02562 * 7 6 4 9 9 O 1.21272 * 120.00513 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.99846 * 180.02562 * 8 7 6 11 11 N 1.46492 * 109.47199 * 179.97438 * 10 8 7 12 12 C 1.34948 * 126.03801 * 124.99953 * 11 10 8 13 13 C 1.35315 * 107.75049 * 179.97438 * 12 11 10 14 14 C 1.39874 * 107.91885 * 0.02562 * 13 12 11 15 15 N 1.30841 * 108.20129 * 359.73814 * 14 13 12 16 16 N 1.46498 * 109.47036 * 180.02562 * 4 2 1 17 17 C 1.36943 * 119.99752 * 274.72222 * 16 4 2 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 4 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 4 20 20 N 1.31611 * 120.00081 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99814 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47483 * 90.00178 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00042 * 21 19 17 24 24 H 1.48502 * 109.47495 * 329.99664 * 21 19 17 25 25 H 1.09000 * 109.47191 * 60.00002 * 1 2 3 26 26 H 1.08995 * 109.46928 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47066 * 299.99675 * 1 2 3 28 28 H 1.08997 * 109.47066 * 240.00325 * 2 1 3 29 29 H 1.09003 * 109.46809 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47238 * 299.99969 * 3 2 1 31 31 H 1.08997 * 109.47037 * 60.00307 * 3 2 1 32 32 H 1.08995 * 109.47415 * 304.99804 * 6 4 2 33 33 H 1.09008 * 109.47087 * 65.00143 * 6 4 2 34 34 H 0.96998 * 120.00120 * 0.02562 * 7 6 4 35 35 H 1.08997 * 109.47068 * 300.00700 * 10 8 7 36 36 H 1.09008 * 109.46877 * 60.00083 * 10 8 7 37 37 H 1.07996 * 126.12829 * 359.95985 * 12 11 10 38 38 H 1.08002 * 126.04540 * 179.97438 * 13 12 11 39 39 H 1.07997 * 125.90162 * 180.02562 * 14 13 12 40 40 H 0.97001 * 120.00384 * 95.00578 * 16 4 2 41 41 H 0.97008 * 120.00329 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -1.7489 1.2491 6 6 1.5301 0.0000 2.4984 7 7 2.1141 -0.6177 3.6916 8 6 1.8052 -0.1446 4.9152 9 8 1.0434 0.7922 5.0286 10 6 2.4065 -0.7796 6.1425 11 7 1.9181 -0.0891 7.3386 12 6 1.3019 -0.6653 8.3919 13 6 1.0108 0.3100 9.2836 14 6 1.4642 1.5239 8.7570 15 7 2.0129 1.2851 7.5935 16 7 3.5050 -0.7207 1.2495 17 6 4.1902 -1.6951 0.5739 18 1 3.6505 -2.4614 0.0372 19 6 5.5783 -1.6979 0.5789 20 7 6.2368 -2.6341 -0.0708 21 14 6.5116 -0.3730 1.5077 22 1 6.7533 -0.8228 2.9022 23 1 7.8121 -0.1208 0.8367 24 1 5.7116 0.8781 1.5227 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.8184 1.0502 2.4549 33 1 0.4437 -0.0770 2.5444 34 1 2.7232 -1.3672 3.6010 35 1 2.1190 -1.8301 6.1859 36 1 3.4928 -0.7019 6.0966 37 1 1.0805 -1.7164 8.5032 38 1 0.5153 0.1752 10.2337 39 1 1.3803 2.4906 9.2311 40 1 3.9897 -0.0325 1.7315 41 1 7.2069 -2.6359 -0.0676 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753824181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:12 Heat of formation + Delta-G solvation = 55.517217 kcal Electronic energy + Delta-G solvation = -22096.886673 eV Core-core repulsion = 18821.231101 eV Total energy + Delta-G solvation = -3275.655573 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.20109 -39.47114 -37.52080 -33.95296 -33.34861 -33.31525 -30.90129 -30.12692 -28.59523 -26.82693 -26.65675 -23.84075 -22.33403 -21.42249 -21.11730 -20.18288 -18.80606 -18.01108 -17.32788 -16.95666 -15.90456 -15.73639 -15.04410 -14.58179 -14.39669 -13.90469 -13.71799 -13.69635 -13.64423 -13.08942 -12.97046 -12.87809 -12.73935 -12.48775 -12.24318 -11.61572 -11.34548 -11.15620 -11.04721 -10.74485 -10.62900 -10.49995 -10.23825 -10.05082 -9.86551 -9.68593 -9.34445 -9.03390 -8.82822 -8.63920 -7.40590 -5.88474 -3.25434 1.84555 2.33758 2.64550 2.86104 3.26811 3.32524 3.33248 3.38802 4.44846 4.48004 4.69228 4.77593 4.94744 5.02901 5.09755 5.19280 5.34350 5.49482 5.51623 5.60769 5.66445 5.69647 5.76906 5.93935 5.97809 5.98441 6.18850 6.24602 6.30773 6.45001 6.57279 6.59710 6.68604 6.84924 6.87149 6.93114 7.65377 7.70287 7.86913 8.29574 8.31061 9.07737 9.79983 9.99077 11.29402 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.004791 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.538262 B = 5843.046114 C = 6955.065759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.142 4.142 4 C 0.176 3.824 5 H 0.063 0.937 6 C 0.109 3.891 7 N -0.715 5.715 8 C 0.496 3.504 9 O -0.522 6.522 10 C 0.112 3.888 11 N -0.359 5.359 12 C 0.051 3.949 13 C -0.274 4.274 14 C 0.035 3.965 15 N -0.265 5.265 16 N -0.745 5.745 17 C -0.247 4.247 18 H 0.092 0.908 19 C 0.011 3.989 20 N -0.930 5.930 21 Si 0.878 3.122 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.410 0.590 35 H 0.126 0.874 36 H 0.116 0.884 37 H 0.173 0.827 38 H 0.146 0.854 39 H 0.181 0.819 40 H 0.362 0.638 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.699 2.694 13.107 17.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.200 4.200 4 C 0.066 3.934 5 H 0.081 0.919 6 C -0.015 4.015 7 N -0.368 5.368 8 C 0.279 3.721 9 O -0.397 6.397 10 C -0.014 4.014 11 N -0.142 5.142 12 C -0.095 4.095 13 C -0.304 4.304 14 C -0.152 4.152 15 N -0.086 5.086 16 N -0.388 5.388 17 C -0.377 4.377 18 H 0.109 0.891 19 C -0.186 4.186 20 N -0.577 5.577 21 Si 0.709 3.291 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.246 0.754 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.190 0.810 38 H 0.164 0.836 39 H 0.198 0.802 40 H 0.195 0.805 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.523 3.582 11.895 16.281 hybrid contribution 0.732 0.150 1.134 1.358 sum -9.791 3.732 13.029 16.720 Atomic orbital electron populations 1.21916 0.96449 1.01178 1.01112 1.21690 0.93866 0.96924 1.00776 1.21791 1.02134 0.95899 1.00150 1.20483 0.85039 0.97343 0.90523 0.91914 1.21887 0.97685 0.97901 0.84004 1.45962 1.48970 1.36762 1.05142 1.20420 0.82520 0.84472 0.84679 1.90758 1.35286 1.27359 1.86307 1.21529 1.01367 0.96541 0.81915 1.48108 1.45835 1.05771 1.14476 1.22538 0.98377 0.99880 0.88676 1.21460 1.13447 0.92138 1.03350 1.23907 0.98721 0.99511 0.93053 1.77529 1.22742 0.91506 1.16811 1.42835 1.00338 1.32998 1.62617 1.19042 0.89376 1.04155 1.25082 0.89063 1.24639 0.96158 0.97819 0.99965 1.69687 1.07126 1.34725 1.46188 0.86662 0.80059 0.82490 0.79918 1.21117 1.21702 1.20299 0.93324 0.93003 0.92989 0.90368 0.91905 0.93838 0.93503 0.91329 0.91201 0.75383 0.85658 0.86662 0.80999 0.83642 0.80238 0.80454 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.84 37.16 0.33 -1.63 16 2 C -0.11 -1.78 2.92 -90.62 -0.26 -2.04 16 3 C -0.14 -2.27 8.69 37.16 0.32 -1.95 16 4 C 0.18 2.99 2.27 -67.93 -0.15 2.84 16 5 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 6 C 0.11 1.70 4.51 -4.04 -0.02 1.68 16 7 N -0.71 -10.41 5.39 -60.29 -0.32 -10.73 16 8 C 0.50 7.47 7.86 -10.98 -0.09 7.38 16 9 O -0.52 -9.98 15.72 5.56 0.09 -9.89 16 10 C 0.11 1.28 6.99 -5.20 -0.04 1.24 16 11 N -0.36 -4.80 3.39 -62.55 -0.21 -5.01 16 12 C 0.05 0.54 11.45 -17.22 -0.20 0.34 16 13 C -0.27 -2.93 10.80 -40.01 -0.43 -3.36 16 14 C 0.04 0.44 12.03 -17.36 -0.21 0.23 16 15 N -0.27 -4.20 11.66 30.63 0.36 -3.84 16 16 N -0.74 -15.52 3.60 -53.43 -0.19 -15.72 16 17 C -0.25 -6.28 10.41 -15.06 -0.16 -6.44 16 18 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 19 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 20 N -0.93 -27.65 13.97 55.49 0.78 -26.88 16 21 Si 0.88 20.99 27.74 -169.99 -4.71 16.28 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.37 6.52 56.52 0.37 -6.01 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.66 6.54 -51.93 -0.34 0.32 16 28 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.06 1.15 7.60 -51.93 -0.39 0.75 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.71 6.32 -51.93 -0.33 0.38 16 32 H 0.07 1.16 6.17 -51.93 -0.32 0.84 16 33 H 0.07 1.04 6.71 -51.92 -0.35 0.69 16 34 H 0.41 5.67 8.14 -40.82 -0.33 5.34 16 35 H 0.13 0.92 8.07 -51.93 -0.42 0.50 16 36 H 0.12 1.20 8.14 -51.92 -0.42 0.77 16 37 H 0.17 1.13 8.06 -52.49 -0.42 0.70 16 38 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.18 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.36 7.73 5.66 -40.82 -0.23 7.50 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 339.01 15.07 5.11 5.11 Total: -1.00 -33.85 339.01 -6.22 -40.07 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -6.11 Total: 12.14 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.00 Total: -1.52 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.40 Total: -62.18 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.71 Total: 16.28 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.85 -6.22 -40.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753824181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.589 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds