Wall clock time and date at job start Fri Apr 10 2020 17:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46818 * 2 1 4 4 C 1.52997 * 109.47241 * 120.00077 * 2 1 3 5 5 H 1.09004 * 109.46812 * 60.00212 * 4 2 1 6 6 C 1.52999 * 109.47114 * 300.00025 * 4 2 1 7 7 N 1.46500 * 109.47226 * 184.99495 * 6 4 2 8 8 C 1.34776 * 119.99923 * 180.02562 * 7 6 4 9 9 O 1.21272 * 120.00513 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.99846 * 180.02562 * 8 7 6 11 11 N 1.46492 * 109.47199 * 179.97438 * 10 8 7 12 12 C 1.34948 * 126.03801 * 124.99953 * 11 10 8 13 13 C 1.35315 * 107.75049 * 179.97438 * 12 11 10 14 14 C 1.39874 * 107.91885 * 0.02562 * 13 12 11 15 15 N 1.30841 * 108.20129 * 359.73814 * 14 13 12 16 16 N 1.46498 * 109.47036 * 180.02562 * 4 2 1 17 17 C 1.36943 * 119.99752 * 274.72222 * 16 4 2 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 4 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 4 20 20 N 1.31611 * 120.00081 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99814 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47483 * 90.00178 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00042 * 21 19 17 24 24 H 1.48502 * 109.47495 * 329.99664 * 21 19 17 25 25 H 1.09000 * 109.47191 * 60.00002 * 1 2 3 26 26 H 1.08995 * 109.46928 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47066 * 299.99675 * 1 2 3 28 28 H 1.08997 * 109.47066 * 240.00325 * 2 1 3 29 29 H 1.09003 * 109.46809 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47238 * 299.99969 * 3 2 1 31 31 H 1.08997 * 109.47037 * 60.00307 * 3 2 1 32 32 H 1.08995 * 109.47415 * 304.99804 * 6 4 2 33 33 H 1.09008 * 109.47087 * 65.00143 * 6 4 2 34 34 H 0.96998 * 120.00120 * 0.02562 * 7 6 4 35 35 H 1.08997 * 109.47068 * 300.00700 * 10 8 7 36 36 H 1.09008 * 109.46877 * 60.00083 * 10 8 7 37 37 H 1.07996 * 126.12829 * 359.95985 * 12 11 10 38 38 H 1.08002 * 126.04540 * 179.97438 * 13 12 11 39 39 H 1.07997 * 125.90162 * 180.02562 * 14 13 12 40 40 H 0.97001 * 120.00384 * 95.00578 * 16 4 2 41 41 H 0.97008 * 120.00329 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -1.7489 1.2491 6 6 1.5301 0.0000 2.4984 7 7 2.1141 -0.6177 3.6916 8 6 1.8052 -0.1446 4.9152 9 8 1.0434 0.7922 5.0286 10 6 2.4065 -0.7796 6.1425 11 7 1.9181 -0.0891 7.3386 12 6 1.3019 -0.6653 8.3919 13 6 1.0108 0.3100 9.2836 14 6 1.4642 1.5239 8.7570 15 7 2.0129 1.2851 7.5935 16 7 3.5050 -0.7207 1.2495 17 6 4.1902 -1.6951 0.5739 18 1 3.6505 -2.4614 0.0372 19 6 5.5783 -1.6979 0.5789 20 7 6.2368 -2.6341 -0.0708 21 14 6.5116 -0.3730 1.5077 22 1 6.7533 -0.8228 2.9022 23 1 7.8121 -0.1208 0.8367 24 1 5.7116 0.8781 1.5227 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.8184 1.0502 2.4549 33 1 0.4437 -0.0770 2.5444 34 1 2.7232 -1.3672 3.6010 35 1 2.1190 -1.8301 6.1859 36 1 3.4928 -0.7019 6.0966 37 1 1.0805 -1.7164 8.5032 38 1 0.5153 0.1752 10.2337 39 1 1.3803 2.4906 9.2311 40 1 3.9897 -0.0325 1.7315 41 1 7.2069 -2.6359 -0.0676 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753824181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:12 Heat of formation + Delta-G solvation = 31.285229 kcal Electronic energy + Delta-G solvation = -22097.937451 eV Core-core repulsion = 18821.231101 eV Total energy + Delta-G solvation = -3276.706351 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.07902 -40.67669 -38.92442 -35.26750 -35.09804 -34.24476 -32.75152 -30.99344 -29.81383 -28.01711 -27.85460 -25.42118 -23.93833 -22.44197 -21.92869 -21.27440 -20.16622 -19.83018 -18.28251 -18.14193 -17.16070 -16.98228 -16.50367 -15.92740 -15.56613 -15.31685 -14.98276 -14.82118 -14.75226 -14.52344 -14.27199 -14.07682 -14.02540 -13.60905 -13.17005 -12.99266 -12.87787 -12.71933 -12.60383 -12.26339 -12.07344 -11.83807 -11.65065 -11.53894 -11.28716 -11.16109 -10.92105 -10.31591 -10.07212 -9.48774 -9.30126 -7.99716 -5.32375 0.99583 1.36738 1.40568 1.45787 1.50574 1.52951 2.02741 2.24393 2.48077 3.31702 3.51403 3.64595 3.77023 3.86627 4.07779 4.15198 4.18376 4.24105 4.26665 4.39987 4.45231 4.67357 4.74143 4.84493 4.88114 4.93011 5.06307 5.10552 5.17053 5.18232 5.27477 5.41158 5.52934 5.60936 5.75897 5.82951 6.12064 6.23602 6.51136 6.82952 7.09403 7.16240 7.84340 8.03039 9.21651 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.004791 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.538262 B = 5843.046114 C = 6955.065759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.177 3.823 5 H 0.063 0.937 6 C 0.120 3.880 7 N -0.712 5.712 8 C 0.495 3.505 9 O -0.566 6.566 10 C 0.112 3.888 11 N -0.374 5.374 12 C 0.054 3.946 13 C -0.283 4.283 14 C 0.026 3.974 15 N -0.329 5.329 16 N -0.743 5.743 17 C -0.216 4.216 18 H 0.064 0.936 19 C -0.052 4.052 20 N -0.981 5.981 21 Si 0.939 3.061 22 H -0.273 1.273 23 H -0.305 1.305 24 H -0.264 1.264 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.415 0.585 35 H 0.171 0.829 36 H 0.125 0.875 37 H 0.214 0.786 38 H 0.173 0.827 39 H 0.199 0.801 40 H 0.363 0.637 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.156 2.759 14.941 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 C -0.196 4.196 4 C 0.068 3.932 5 H 0.081 0.919 6 C -0.005 4.005 7 N -0.365 5.365 8 C 0.281 3.719 9 O -0.444 6.444 10 C -0.013 4.013 11 N -0.157 5.157 12 C -0.091 4.091 13 C -0.312 4.312 14 C -0.160 4.160 15 N -0.150 5.150 16 N -0.386 5.386 17 C -0.347 4.347 18 H 0.082 0.918 19 C -0.244 4.244 20 N -0.632 5.632 21 Si 0.768 3.232 22 H -0.199 1.199 23 H -0.232 1.232 24 H -0.190 1.190 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.252 0.748 35 H 0.188 0.812 36 H 0.143 0.857 37 H 0.231 0.769 38 H 0.190 0.810 39 H 0.216 0.784 40 H 0.196 0.804 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.025 3.661 13.755 18.633 hybrid contribution 1.054 0.104 0.552 1.195 sum -10.971 3.765 14.307 18.418 Atomic orbital electron populations 1.21835 0.93696 1.02094 1.02210 1.21594 0.96164 0.96484 0.98791 1.21751 1.00311 0.96070 1.01459 1.20625 0.82676 0.97850 0.92002 0.91908 1.21699 0.98302 0.96937 0.83529 1.45941 1.48840 1.36697 1.05006 1.21054 0.81642 0.83734 0.85499 1.90738 1.37383 1.29335 1.86931 1.21748 1.01601 0.98196 0.79721 1.48282 1.46614 1.05311 1.15454 1.23299 0.96563 1.01767 0.87466 1.21880 1.13420 0.91385 1.04522 1.24419 0.97852 1.01240 0.92487 1.77441 1.25302 0.93562 1.18726 1.42777 1.01947 1.31861 1.61992 1.18965 0.89239 1.03505 1.23004 0.91768 1.25253 0.97237 1.00074 1.01803 1.69846 1.07019 1.37278 1.49027 0.85668 0.78088 0.80493 0.78949 1.19900 1.23214 1.18980 0.92041 0.92230 0.92079 0.92900 0.94604 0.92252 0.92523 0.92456 0.89954 0.74835 0.81177 0.85740 0.76903 0.80999 0.78423 0.80422 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.84 71.98 0.64 -2.73 16 2 C -0.11 -3.36 2.92 -10.79 -0.03 -3.40 16 3 C -0.14 -4.25 8.69 71.98 0.63 -3.62 16 4 C 0.18 5.80 2.27 44.99 0.10 5.90 16 5 H 0.06 2.09 8.08 -2.39 -0.02 2.08 16 6 C 0.12 3.51 4.51 86.38 0.39 3.90 16 7 N -0.71 -19.42 5.39 -463.07 -2.49 -21.91 16 8 C 0.50 14.09 7.86 87.66 0.69 14.78 16 9 O -0.57 -21.16 15.72 -3.00 -0.05 -21.21 16 10 C 0.11 2.27 6.99 85.64 0.60 2.86 16 11 N -0.37 -9.22 3.39 -351.81 -1.19 -10.42 16 12 C 0.05 0.97 11.45 83.54 0.96 1.93 16 13 C -0.28 -5.34 10.80 21.99 0.24 -5.10 16 14 C 0.03 0.63 12.03 85.24 1.03 1.66 16 15 N -0.33 -10.19 11.66 -57.02 -0.66 -10.86 16 16 N -0.74 -30.41 3.60 -322.94 -1.16 -31.57 16 17 C -0.22 -11.06 10.41 84.03 0.87 -10.19 16 18 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 19 C -0.05 -2.85 5.50 84.86 0.47 -2.38 16 20 N -0.98 -59.68 13.97 21.65 0.30 -59.38 16 21 Si 0.94 43.51 27.74 68.60 1.90 45.41 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 24 H -0.26 -11.54 6.52 99.48 0.65 -10.89 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.37 6.54 -2.39 -0.02 1.36 16 28 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.03 1.27 7.60 -2.39 -0.02 1.25 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.62 6.32 -2.39 -0.02 1.60 16 32 H 0.06 1.85 6.17 -2.39 -0.01 1.83 16 33 H 0.08 2.26 6.71 -2.38 -0.02 2.24 16 34 H 0.41 10.63 8.14 -92.71 -0.75 9.87 16 35 H 0.17 1.78 8.07 -2.39 -0.02 1.76 16 36 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.21 1.78 8.06 -2.91 -0.02 1.76 16 38 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.20 3.52 8.06 -2.91 -0.02 3.50 16 40 H 0.36 15.01 5.66 -92.71 -0.52 14.48 16 41 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -75.46 339.01 2.92 -72.54 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: -0.30 Total: 33.77 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 6.57 Total: 3.61 kcal Atomic # 7 Polarization: -128.92 SS G_CDS: -5.21 Total: -134.14 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.05 Total: -21.21 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.90 Total: 45.41 kcal Total: -75.46 2.92 -72.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753824181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.830 kcal (2) G-P(sol) polarization free energy of solvation -75.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds