Wall clock time and date at job start Fri Apr 10 2020 17:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46648 * 2 1 4 4 C 1.50699 * 109.46911 * 179.97438 * 3 2 1 5 5 C 1.35366 * 126.38699 * 84.99925 * 4 3 2 6 6 C 1.41502 * 105.50495 * 180.02562 * 5 4 3 7 7 C 1.47715 * 126.51816 * 179.97438 * 6 5 4 8 8 O 1.21565 * 119.99701 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99690 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99741 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47175 * 35.00237 * 10 9 7 12 12 C 1.53006 * 109.46998 * 275.00368 * 10 9 7 13 13 C 1.52997 * 109.47204 * 155.00342 * 10 9 7 14 14 N 1.46498 * 109.47113 * 305.00267 * 13 10 9 15 15 C 1.36934 * 120.00312 * 179.97438 * 14 13 10 16 16 H 1.07995 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00307 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00025 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99981 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47383 * 89.99875 * 19 17 15 21 21 H 1.48504 * 109.47052 * 210.00194 * 19 17 15 22 22 H 1.48507 * 109.47175 * 329.99772 * 19 17 15 23 23 N 1.31805 * 106.96184 * 0.23892 * 6 5 4 24 24 N 1.28471 * 110.07496 * 359.59947 * 23 6 5 25 25 H 0.97003 * 124.88542 * 180.20537 * 24 23 6 26 26 H 1.09004 * 109.46990 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47628 * 299.99959 * 1 2 3 28 28 H 1.09004 * 109.47140 * 60.00271 * 1 2 3 29 29 H 1.09002 * 109.47238 * 240.00288 * 2 1 3 30 30 H 1.09000 * 109.47076 * 119.99219 * 2 1 3 31 31 H 1.08992 * 109.47482 * 59.99883 * 3 2 1 32 32 H 1.09004 * 109.47129 * 299.99736 * 3 2 1 33 33 H 1.08002 * 127.24674 * 0.03740 * 5 4 3 34 34 H 0.96997 * 120.00149 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.47050 * 299.99945 * 12 10 9 36 36 H 1.09001 * 109.46801 * 60.00058 * 12 10 9 37 37 H 1.09001 * 109.46998 * 179.97438 * 12 10 9 38 38 H 1.08998 * 109.47097 * 64.99664 * 13 10 9 39 39 H 1.09002 * 109.47223 * 184.99845 * 13 10 9 40 40 H 0.97004 * 120.00154 * 359.97438 * 14 13 10 41 41 H 0.97003 * 120.00117 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3504 1.3475 -1.0846 6 6 5.6723 1.3910 -0.5815 7 6 6.9170 1.3208 -1.3737 8 8 6.8624 1.2142 -2.5835 9 7 8.1133 1.3750 -0.7553 10 6 9.3479 1.3048 -1.5409 11 1 9.2011 1.8122 -2.4944 12 6 9.7092 -0.1604 -1.7932 13 6 10.4818 1.9844 -0.7708 14 7 10.0863 3.3520 -0.4251 15 6 10.9466 4.1584 0.2711 16 1 11.9166 3.7860 0.5657 17 6 10.5721 5.4543 0.5982 18 7 11.3993 6.2295 1.2669 19 14 8.8941 6.0982 0.0892 20 1 7.9068 5.8078 1.1597 21 1 8.9718 7.5652 -0.1279 22 1 8.4696 5.4335 -1.1692 23 7 5.5816 1.5003 0.7288 24 7 4.3475 1.5370 1.0840 25 1 4.0356 1.6176 1.9989 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 4.0465 1.2576 -2.1171 34 1 8.1569 1.4598 0.2100 35 1 9.8560 -0.6678 -0.8397 36 1 8.9013 -0.6445 -2.3419 37 1 10.6275 -0.2126 -2.3781 38 1 10.6882 1.4245 0.1413 39 1 11.3776 2.0111 -1.3913 40 1 9.2149 3.6864 -0.6894 41 1 11.1377 7.1353 1.4952 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754236467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:19 Heat of formation + Delta-G solvation = 31.853321 kcal Electronic energy + Delta-G solvation = -21630.931905 eV Core-core repulsion = 18354.250189 eV Total energy + Delta-G solvation = -3276.681716 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.77864 -39.31310 -36.24276 -35.70910 -33.69073 -32.20783 -31.37331 -31.01811 -30.07533 -26.79126 -25.94590 -24.32612 -22.33122 -22.09541 -21.15292 -20.67373 -19.87833 -17.87562 -17.68845 -16.74351 -15.92043 -15.73574 -15.47774 -14.75259 -14.40505 -14.21378 -13.97264 -13.82335 -13.77652 -13.39218 -12.80498 -12.62268 -12.58705 -12.32772 -12.21299 -11.93569 -11.77340 -11.71683 -11.20975 -11.06090 -10.86683 -10.85591 -10.45226 -10.12280 -9.89950 -9.58694 -9.46729 -9.08701 -8.91153 -8.75482 -7.23192 -5.76101 -3.11523 1.59000 2.00124 2.71786 3.38488 3.42069 3.46289 3.47346 3.58321 4.27014 4.39995 4.54653 4.61223 4.62026 4.91192 5.01959 5.11961 5.27726 5.30454 5.36454 5.41857 5.49669 5.53715 5.61798 5.62448 5.62963 5.83329 5.87079 5.88089 5.97993 6.09616 6.28712 6.35793 6.43098 6.63954 6.82007 6.90003 7.64549 7.92837 7.99758 8.42327 8.45127 9.21973 9.94606 10.14220 11.42163 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.017642 B = 0.004313 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.759861 B = 6490.079221 C = 7610.468792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.050 4.050 4 C 0.012 3.988 5 C -0.175 4.175 6 C -0.008 4.008 7 C 0.601 3.399 8 O -0.540 6.540 9 N -0.702 5.702 10 C 0.129 3.871 11 H 0.089 0.911 12 C -0.157 4.157 13 C 0.149 3.851 14 N -0.755 5.755 15 C -0.243 4.243 16 H 0.091 0.909 17 C 0.007 3.993 18 N -0.934 5.934 19 Si 0.881 3.119 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.277 1.277 23 N -0.252 5.252 24 N -0.380 5.380 25 H 0.443 0.557 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.161 0.839 34 H 0.410 0.590 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.034 0.966 39 H 0.044 0.956 40 H 0.363 0.637 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.665 -14.456 -1.515 25.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.089 4.089 4 C -0.114 4.114 5 C -0.203 4.203 6 C -0.169 4.169 7 C 0.385 3.615 8 O -0.415 6.415 9 N -0.353 5.353 10 C 0.024 3.976 11 H 0.107 0.893 12 C -0.216 4.216 13 C 0.021 3.979 14 N -0.402 5.402 15 C -0.373 4.373 16 H 0.109 0.891 17 C -0.189 4.189 18 N -0.582 5.582 19 Si 0.711 3.289 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.203 1.203 23 N -0.088 5.088 24 N -0.094 5.094 25 H 0.288 0.712 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.179 0.821 34 H 0.246 0.754 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.196 0.804 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.771 -14.369 -1.358 24.479 hybrid contribution -1.754 0.736 0.052 1.903 sum -21.525 -13.633 -1.306 25.513 Atomic orbital electron populations 1.21783 0.95244 1.02002 1.02028 1.21545 0.95963 0.95508 1.02875 1.20215 0.86326 0.98253 1.04089 1.21409 0.94990 1.07568 0.87409 1.21487 0.90426 1.08705 0.99724 1.22022 0.95374 1.09652 0.89882 1.16899 0.81819 0.76441 0.86319 1.90762 1.86893 1.50748 1.13110 1.45943 1.04892 1.72662 1.11770 1.21370 0.83672 0.96392 0.96141 0.89292 1.22093 1.01810 0.95758 1.01910 1.20971 0.94060 0.86105 0.96739 1.42719 1.18288 1.10563 1.68583 1.19051 0.98143 0.93469 1.26657 0.89071 1.24640 0.97571 0.96463 1.00254 1.69701 1.35679 1.08389 1.44383 0.86591 0.85469 0.78253 0.78551 1.21151 1.21679 1.20306 1.73629 1.01373 1.18551 1.15209 1.43324 1.02968 1.53250 1.09865 0.71221 0.92448 0.92668 0.92375 0.91127 0.91982 0.90608 0.89005 0.82124 0.75389 0.92370 0.92308 0.91375 0.94832 0.93865 0.80384 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.70 5.92 -26.73 -0.16 -0.86 16 3 C -0.05 -0.32 5.77 -27.88 -0.16 -0.48 16 4 C 0.01 0.12 6.48 -82.21 -0.53 -0.41 16 5 C -0.18 -2.29 10.73 -39.36 -0.42 -2.71 16 6 C -0.01 -0.13 7.13 -82.76 -0.59 -0.72 16 7 C 0.60 10.69 7.79 -12.39 -0.10 10.59 16 8 O -0.54 -10.69 16.59 5.31 0.09 -10.60 16 9 N -0.70 -12.01 4.51 -54.79 -0.25 -12.25 16 10 C 0.13 2.17 2.73 -67.93 -0.19 1.99 16 11 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 12 C -0.16 -2.15 9.48 37.16 0.35 -1.80 16 13 C 0.15 2.88 5.82 -4.04 -0.02 2.86 16 14 N -0.76 -18.38 5.24 -59.91 -0.31 -18.69 16 15 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 16 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 17 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 18 N -0.93 -29.74 13.97 55.49 0.78 -28.96 16 19 Si 0.88 23.10 27.74 -169.99 -4.71 18.39 16 20 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 21 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 22 H -0.28 -7.10 6.52 56.52 0.37 -6.73 16 23 N -0.25 -3.65 11.92 33.42 0.40 -3.25 16 24 N -0.38 -4.03 6.83 33.50 0.23 -3.80 16 25 H 0.44 3.08 8.96 -190.44 -1.71 1.37 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 34 H 0.41 6.94 8.33 -40.82 -0.34 6.60 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.36 8.96 5.20 -40.82 -0.21 8.75 16 41 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 347.46 15.07 5.24 5.24 Total: -1.00 -35.25 347.46 -7.99 -43.24 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -7.74 Total: 9.64 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -1.70 Total: 1.05 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: 0.84 Total: -66.96 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.71 Total: 18.39 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.25 -7.99 -43.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754236467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.097 kcal (2) G-P(sol) polarization free energy of solvation -35.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds