Wall clock time and date at job start Fri Apr 10 2020 17:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46648 * 2 1 4 4 C 1.50699 * 109.46911 * 179.97438 * 3 2 1 5 5 C 1.35366 * 126.38699 * 84.99925 * 4 3 2 6 6 C 1.41502 * 105.50495 * 180.02562 * 5 4 3 7 7 C 1.47715 * 126.51816 * 179.97438 * 6 5 4 8 8 O 1.21565 * 119.99701 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99690 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99741 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47175 * 35.00237 * 10 9 7 12 12 C 1.53006 * 109.46998 * 275.00368 * 10 9 7 13 13 C 1.52997 * 109.47204 * 155.00342 * 10 9 7 14 14 N 1.46498 * 109.47113 * 305.00267 * 13 10 9 15 15 C 1.36934 * 120.00312 * 179.97438 * 14 13 10 16 16 H 1.07995 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00307 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00025 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99981 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47383 * 89.99875 * 19 17 15 21 21 H 1.48504 * 109.47052 * 210.00194 * 19 17 15 22 22 H 1.48507 * 109.47175 * 329.99772 * 19 17 15 23 23 N 1.31805 * 106.96184 * 0.23892 * 6 5 4 24 24 N 1.28471 * 110.07496 * 359.59947 * 23 6 5 25 25 H 0.97003 * 124.88542 * 180.20537 * 24 23 6 26 26 H 1.09004 * 109.46990 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47628 * 299.99959 * 1 2 3 28 28 H 1.09004 * 109.47140 * 60.00271 * 1 2 3 29 29 H 1.09002 * 109.47238 * 240.00288 * 2 1 3 30 30 H 1.09000 * 109.47076 * 119.99219 * 2 1 3 31 31 H 1.08992 * 109.47482 * 59.99883 * 3 2 1 32 32 H 1.09004 * 109.47129 * 299.99736 * 3 2 1 33 33 H 1.08002 * 127.24674 * 0.03740 * 5 4 3 34 34 H 0.96997 * 120.00149 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.47050 * 299.99945 * 12 10 9 36 36 H 1.09001 * 109.46801 * 60.00058 * 12 10 9 37 37 H 1.09001 * 109.46998 * 179.97438 * 12 10 9 38 38 H 1.08998 * 109.47097 * 64.99664 * 13 10 9 39 39 H 1.09002 * 109.47223 * 184.99845 * 13 10 9 40 40 H 0.97004 * 120.00154 * 359.97438 * 14 13 10 41 41 H 0.97003 * 120.00117 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3504 1.3475 -1.0846 6 6 5.6723 1.3910 -0.5815 7 6 6.9170 1.3208 -1.3737 8 8 6.8624 1.2142 -2.5835 9 7 8.1133 1.3750 -0.7553 10 6 9.3479 1.3048 -1.5409 11 1 9.2011 1.8122 -2.4944 12 6 9.7092 -0.1604 -1.7932 13 6 10.4818 1.9844 -0.7708 14 7 10.0863 3.3520 -0.4251 15 6 10.9466 4.1584 0.2711 16 1 11.9166 3.7860 0.5657 17 6 10.5721 5.4543 0.5982 18 7 11.3993 6.2295 1.2669 19 14 8.8941 6.0982 0.0892 20 1 7.9068 5.8078 1.1597 21 1 8.9718 7.5652 -0.1279 22 1 8.4696 5.4335 -1.1692 23 7 5.5816 1.5003 0.7288 24 7 4.3475 1.5370 1.0840 25 1 4.0356 1.6176 1.9989 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 4.0465 1.2576 -2.1171 34 1 8.1569 1.4598 0.2100 35 1 9.8560 -0.6678 -0.8397 36 1 8.9013 -0.6445 -2.3419 37 1 10.6275 -0.2126 -2.3781 38 1 10.6882 1.4245 0.1413 39 1 11.3776 2.0111 -1.3913 40 1 9.2149 3.6864 -0.6894 41 1 11.1377 7.1353 1.4952 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754236467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:18 Heat of formation + Delta-G solvation = 5.991376 kcal Electronic energy + Delta-G solvation = -21632.053363 eV Core-core repulsion = 18354.250189 eV Total energy + Delta-G solvation = -3277.803174 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.74398 -40.68116 -37.82428 -36.25667 -35.54804 -33.55941 -32.93048 -32.04082 -31.39522 -27.65770 -27.40336 -25.57324 -24.04724 -22.89947 -22.10447 -21.95468 -21.16097 -19.77415 -18.72954 -18.00180 -17.24940 -16.86157 -16.67643 -15.95302 -15.91178 -15.66020 -15.17507 -14.86224 -14.82434 -14.63468 -14.21313 -14.01272 -13.87764 -13.70332 -13.23335 -13.06679 -12.92781 -12.64187 -12.47206 -12.24751 -12.13561 -11.95456 -11.90365 -11.77642 -11.54670 -11.28589 -11.04016 -10.53153 -10.10160 -9.98586 -9.34388 -8.06673 -5.39057 0.46650 1.07117 1.31535 1.32765 1.39809 1.83504 2.21449 2.32471 2.42083 3.25279 3.33365 3.55632 3.62807 3.87282 3.96827 4.16041 4.23852 4.25352 4.39999 4.44225 4.53823 4.67875 4.79147 4.83127 4.83908 4.91628 4.92948 4.98350 5.08183 5.22089 5.29301 5.29945 5.34156 5.47304 5.49026 5.73078 6.06592 6.17651 6.42420 6.82784 7.02954 7.11460 7.79172 7.96905 9.14796 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.017642 B = 0.004313 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.759861 B = 6490.079221 C = 7610.468792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.047 4.047 4 C 0.037 3.963 5 C -0.198 4.198 6 C -0.038 4.038 7 C 0.598 3.402 8 O -0.568 6.568 9 N -0.701 5.701 10 C 0.135 3.865 11 H 0.072 0.928 12 C -0.147 4.147 13 C 0.147 3.853 14 N -0.759 5.759 15 C -0.228 4.228 16 H 0.067 0.933 17 C -0.056 4.056 18 N -0.979 5.979 19 Si 0.946 3.054 20 H -0.279 1.279 21 H -0.292 1.292 22 H -0.270 1.270 23 N -0.272 5.272 24 N -0.364 5.364 25 H 0.460 0.540 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.164 0.836 34 H 0.411 0.589 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.362 0.638 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.122 -15.359 -1.347 27.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.086 4.086 4 C -0.089 4.089 5 C -0.226 4.226 6 C -0.198 4.198 7 C 0.384 3.616 8 O -0.446 6.446 9 N -0.352 5.352 10 C 0.031 3.969 11 H 0.091 0.909 12 C -0.205 4.205 13 C 0.021 3.979 14 N -0.405 5.405 15 C -0.359 4.359 16 H 0.085 0.915 17 C -0.248 4.248 18 N -0.630 5.630 19 Si 0.775 3.225 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.195 1.195 23 N -0.110 5.110 24 N -0.081 5.081 25 H 0.308 0.692 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.182 0.818 34 H 0.247 0.753 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.195 0.805 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -22.233 -15.320 -1.184 27.026 hybrid contribution -0.985 0.928 0.039 1.354 sum -23.218 -14.392 -1.145 27.341 Atomic orbital electron populations 1.21764 0.94170 1.02289 1.02613 1.21507 0.96808 0.94889 1.02412 1.20393 0.83358 0.99037 1.05779 1.21861 0.96441 1.04503 0.86125 1.21685 0.89909 1.10061 1.00909 1.21882 0.95370 1.11985 0.90558 1.17209 0.82505 0.75721 0.86209 1.90729 1.87396 1.52208 1.14295 1.45960 1.04953 1.72543 1.11733 1.21280 0.82843 0.98057 0.94747 0.90934 1.22011 1.02458 0.93164 1.02884 1.21156 0.95296 0.83868 0.97559 1.42752 1.17590 1.12043 1.68092 1.19070 0.97588 0.93787 1.25491 0.91503 1.25340 1.01231 0.97027 1.01224 1.69849 1.37811 1.08807 1.46495 0.85545 0.81206 0.77336 0.78445 1.20485 1.21819 1.19535 1.73545 1.03250 1.19445 1.14713 1.43429 1.02080 1.51566 1.11017 0.69211 0.92379 0.91798 0.92082 0.92174 0.91982 0.88214 0.88029 0.81797 0.75307 0.91088 0.92642 0.89546 0.93719 0.93126 0.80498 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 71.98 0.71 -0.31 16 2 C -0.12 -1.08 5.92 30.60 0.18 -0.89 16 3 C -0.05 -0.45 5.77 29.85 0.17 -0.28 16 4 C 0.04 0.67 6.48 41.40 0.27 0.94 16 5 C -0.20 -4.95 10.73 22.41 0.24 -4.71 16 6 C -0.04 -1.19 7.13 42.46 0.30 -0.89 16 7 C 0.60 21.19 7.79 86.75 0.68 21.86 16 8 O -0.57 -22.66 16.59 -3.92 -0.07 -22.73 16 9 N -0.70 -23.61 4.51 -445.52 -2.01 -25.62 16 10 C 0.14 4.44 2.73 44.99 0.12 4.56 16 11 H 0.07 2.65 7.58 -2.39 -0.02 2.63 16 12 C -0.15 -3.76 9.48 71.98 0.68 -3.07 16 13 C 0.15 5.55 5.82 86.38 0.50 6.05 16 14 N -0.76 -36.45 5.24 -343.47 -1.80 -38.24 16 15 C -0.23 -13.17 10.47 84.03 0.88 -12.29 16 16 H 0.07 4.13 8.06 -2.91 -0.02 4.10 16 17 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 18 N -0.98 -63.29 13.97 21.65 0.30 -62.98 16 19 Si 0.95 47.96 27.74 68.60 1.90 49.87 16 20 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 21 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 22 H -0.27 -13.19 6.52 99.48 0.65 -12.54 16 23 N -0.27 -7.57 11.92 -48.17 -0.57 -8.14 16 24 N -0.36 -6.92 6.83 -47.93 -0.33 -7.25 16 25 H 0.46 5.11 8.96 -219.99 -1.97 3.14 16 26 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.06 0.33 8.14 -2.39 -0.02 0.32 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.16 3.85 8.06 -2.91 -0.02 3.82 16 34 H 0.41 13.66 8.33 -92.71 -0.77 12.89 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.36 17.53 5.20 -92.71 -0.48 17.05 16 41 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -76.22 347.46 0.41 -75.81 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: -2.23 Total: 31.23 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 5.21 Total: 8.06 kcal Atomic # 7 Polarization: -137.83 SS G_CDS: -4.41 Total: -142.24 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.07 Total: -22.73 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.90 Total: 49.87 kcal Total: -76.22 0.41 -75.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754236467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.805 kcal (2) G-P(sol) polarization free energy of solvation -76.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds