Wall clock time and date at job start Fri Apr 10 2020 17:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30488 * 125.65099 * 2 1 4 4 C 1.34133 * 109.25902 * 180.02562 * 3 2 1 5 5 C 1.34669 * 108.01488 * 359.73654 * 4 3 2 6 6 N 1.35048 * 125.64497 * 180.02562 * 2 1 3 7 7 C 1.46494 * 126.40290 * 359.96194 * 6 2 1 8 8 C 1.50703 * 109.46830 * 84.99940 * 7 6 2 9 9 O 1.21282 * 120.00208 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99854 * 179.97438 * 8 7 6 11 11 C 1.46505 * 120.00002 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46689 * 34.99980 * 11 10 8 13 13 C 1.52998 * 109.47068 * 275.00480 * 11 10 8 14 14 C 1.52995 * 109.46982 * 155.00596 * 11 10 8 15 15 N 1.46503 * 109.46918 * 304.99465 * 14 11 10 16 16 C 1.46499 * 120.00772 * 270.00171 * 15 14 11 17 17 C 1.36939 * 119.99476 * 90.00623 * 15 14 11 18 18 H 1.08000 * 120.00480 * 22.02625 * 17 15 14 19 19 C 1.38815 * 119.99951 * 202.02616 * 17 15 14 20 20 N 1.31612 * 119.99833 * 11.43252 * 19 17 15 21 21 Si 1.86796 * 119.99879 * 191.43344 * 19 17 15 22 22 H 1.48500 * 109.47393 * 60.00093 * 21 19 17 23 23 H 1.48503 * 109.46993 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47643 * 299.99684 * 21 19 17 25 25 H 1.08998 * 109.47150 * 269.95560 * 1 2 3 26 26 H 1.09003 * 109.46943 * 29.95773 * 1 2 3 27 27 H 1.08999 * 109.47104 * 149.95470 * 1 2 3 28 28 H 1.07995 * 125.99229 * 180.02562 * 4 3 2 29 29 H 1.08000 * 126.58647 * 180.27631 * 5 4 3 30 30 H 1.09006 * 109.46959 * 325.00627 * 7 6 2 31 31 H 1.08997 * 109.47609 * 205.00107 * 7 6 2 32 32 H 0.97001 * 119.99959 * 0.02562 * 10 8 7 33 33 H 1.08999 * 109.47086 * 300.00112 * 13 11 10 34 34 H 1.09002 * 109.47613 * 60.00073 * 13 11 10 35 35 H 1.08998 * 109.47150 * 180.02562 * 13 11 10 36 36 H 1.08997 * 109.47561 * 64.99802 * 14 11 10 37 37 H 1.09001 * 109.47227 * 185.00545 * 14 11 10 38 38 H 1.09004 * 109.46902 * 94.03876 * 16 15 14 39 39 H 1.08993 * 109.47679 * 214.04630 * 16 15 14 40 40 H 1.09001 * 109.46707 * 334.04731 * 16 15 14 41 41 H 0.97007 * 119.99939 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0603 0.0000 4 6 3.5544 0.6818 -0.0006 5 6 3.5925 -0.6644 0.0050 6 7 2.2940 -1.0975 -0.0005 7 6 1.8425 -2.4911 -0.0003 8 6 1.5691 -2.9306 -1.4157 9 8 1.7355 -2.1562 -2.3341 10 7 1.1406 -4.1847 -1.6609 11 6 0.8754 -4.6122 -3.0369 12 1 1.5893 -4.1364 -3.7091 13 6 -0.5459 -4.2063 -3.4320 14 6 1.0174 -6.1324 -3.1349 15 7 2.3384 -6.5321 -2.6434 16 6 3.4711 -6.6123 -3.5691 17 6 2.5144 -6.8308 -1.3187 18 1 1.6682 -7.1205 -0.7133 19 6 3.7805 -6.7613 -0.7537 20 7 4.7674 -6.1981 -1.4179 21 14 4.0835 -7.4672 0.9490 22 1 3.7713 -8.9190 0.9458 23 1 5.5070 -7.2672 1.3215 24 1 3.2130 -6.7759 1.9336 25 1 -0.3633 -0.0008 1.0276 26 1 -0.3633 0.8904 -0.5132 27 1 -0.3633 -0.8896 -0.5145 28 1 4.4098 1.3409 -0.0003 29 1 4.4776 -1.2832 0.0102 30 1 0.9299 -2.5773 0.5895 31 1 2.6167 -3.1239 0.4335 32 1 1.0079 -4.8042 -0.9264 33 1 -1.2598 -4.6820 -2.7597 34 1 -0.6472 -3.1232 -3.3622 35 1 -0.7434 -4.5248 -4.4556 36 1 0.2455 -6.6092 -2.5309 37 1 0.9079 -6.4413 -4.1745 38 1 4.0208 -5.6712 -3.5529 39 1 4.1317 -7.4243 -3.2655 40 1 3.1033 -6.8009 -4.5777 41 1 5.6520 -6.1492 -1.0229 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754332575.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:23 Heat of formation + Delta-G solvation = 28.828749 kcal Electronic energy + Delta-G solvation = -22905.060347 eV Core-core repulsion = 19628.247475 eV Total energy + Delta-G solvation = -3276.812872 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.09782 -40.63996 -38.07155 -35.76043 -34.95840 -33.20854 -32.63894 -31.79388 -28.76720 -28.04478 -27.59469 -27.35764 -23.75356 -22.60721 -22.23443 -21.31626 -20.63187 -18.86875 -18.28638 -18.14890 -16.92910 -16.77993 -16.30645 -16.00475 -15.60317 -15.24711 -14.96167 -14.85624 -14.63926 -14.40697 -13.96696 -13.84576 -13.56361 -13.46493 -13.20304 -13.10925 -13.07916 -12.85092 -12.67365 -12.54855 -12.16222 -11.99336 -11.96007 -11.67621 -11.32972 -11.03963 -10.58441 -10.41903 -9.88810 -9.29824 -8.77104 -7.75991 -5.24157 0.99270 1.48379 1.54837 1.58613 1.61156 1.72690 2.15335 2.46627 2.54472 3.39182 3.59275 3.66569 3.73351 3.78610 3.94183 4.09890 4.17470 4.41686 4.43707 4.53329 4.55477 4.70214 4.76672 4.82788 4.84371 4.91322 4.99636 5.01582 5.18467 5.31492 5.33202 5.40429 5.66808 5.71244 5.73355 5.79164 6.19759 6.35305 6.69009 7.10037 7.17517 7.33234 7.90234 8.37560 9.27243 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015509 B = 0.006205 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.917969 B = 4511.099128 C = 5543.115495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.205 3.795 3 N -0.529 5.529 4 C -0.045 4.045 5 C -0.062 4.062 6 N -0.441 5.441 7 C 0.087 3.913 8 C 0.497 3.503 9 O -0.587 6.587 10 N -0.678 5.678 11 C 0.124 3.876 12 H 0.034 0.966 13 C -0.146 4.146 14 C 0.142 3.858 15 N -0.612 5.612 16 C 0.179 3.821 17 C -0.247 4.247 18 H 0.085 0.915 19 C -0.047 4.047 20 N -0.937 5.937 21 Si 0.955 3.045 22 H -0.286 1.286 23 H -0.310 1.310 24 H -0.261 1.261 25 H 0.106 0.894 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.187 0.813 29 H 0.179 0.821 30 H 0.158 0.842 31 H 0.127 0.873 32 H 0.411 0.589 33 H 0.077 0.923 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.070 0.930 38 H -0.010 1.010 39 H 0.019 0.981 40 H 0.024 0.976 41 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.093 3.906 3.736 12.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.057 4.057 3 N -0.250 5.250 4 C -0.192 4.192 5 C -0.195 4.195 6 N -0.123 5.123 7 C -0.039 4.039 8 C 0.282 3.718 9 O -0.468 6.468 10 N -0.327 5.327 11 C 0.016 3.984 12 H 0.052 0.948 13 C -0.204 4.204 14 C 0.015 3.985 15 N -0.334 5.334 16 C 0.034 3.966 17 C -0.377 4.377 18 H 0.103 0.897 19 C -0.242 4.242 20 N -0.584 5.584 21 Si 0.784 3.216 22 H -0.212 1.212 23 H -0.238 1.238 24 H -0.186 1.186 25 H 0.124 0.876 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.204 0.796 29 H 0.197 0.803 30 H 0.175 0.825 31 H 0.145 0.855 32 H 0.248 0.752 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.008 0.992 39 H 0.038 0.962 40 H 0.042 0.958 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -11.138 5.071 3.119 12.629 hybrid contribution 1.649 -1.408 0.822 2.319 sum -9.488 3.663 3.941 10.908 Atomic orbital electron populations 1.20300 0.82731 1.04374 1.04830 1.23932 0.97101 0.81018 1.03655 1.70181 1.03020 1.29293 1.22458 1.22570 0.95103 0.93158 1.08372 1.22993 0.87696 0.97242 1.11560 1.44959 1.06631 1.06715 1.54000 1.21849 1.05923 0.80589 0.95500 1.20906 0.76787 0.82823 0.91259 1.90698 1.54287 1.54604 1.47208 1.45665 1.65200 1.11676 1.10206 1.21700 0.96200 0.98100 0.82382 0.94780 1.22016 0.95143 1.00618 1.02667 1.21389 0.87354 0.90411 0.99358 1.44126 1.05501 1.78162 1.05658 1.20477 0.89186 0.97634 0.89321 1.19452 0.94053 1.37703 0.86482 0.89700 1.25659 0.97152 1.00642 1.00727 1.70273 1.01333 1.47746 1.39003 0.85537 0.76074 0.78601 0.81378 1.21233 1.23766 1.18632 0.87552 0.89094 0.90562 0.79628 0.80350 0.82463 0.85521 0.75218 0.90440 0.94252 0.90445 0.90819 0.91220 0.99171 0.96204 0.95774 0.94886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.41 10.04 71.24 0.71 -0.69 16 2 C 0.21 6.48 7.89 138.13 1.09 7.57 16 3 N -0.53 -18.70 11.25 -188.13 -2.12 -20.81 16 4 C -0.05 -1.50 11.87 83.52 0.99 -0.50 16 5 C -0.06 -2.06 11.58 83.09 0.96 -1.10 16 6 N -0.44 -14.01 2.24 -518.35 -1.16 -15.17 16 7 C 0.09 2.41 6.16 85.63 0.53 2.94 16 8 C 0.50 17.47 7.86 87.66 0.69 18.16 16 9 O -0.59 -25.94 16.08 -3.04 -0.05 -25.98 16 10 N -0.68 -22.17 4.49 -442.53 -1.99 -24.16 16 11 C 0.12 4.11 2.88 44.99 0.13 4.24 16 12 H 0.03 1.43 7.58 -2.39 -0.02 1.41 16 13 C -0.15 -3.66 9.48 71.98 0.68 -2.98 16 14 C 0.14 4.70 5.36 86.38 0.46 5.16 16 15 N -0.61 -26.72 2.82 -726.94 -2.05 -28.77 16 16 C 0.18 8.50 9.01 127.77 1.15 9.65 16 17 C -0.25 -11.27 8.02 84.03 0.67 -10.60 16 18 H 0.09 3.53 7.84 -2.91 -0.02 3.51 16 19 C -0.05 -2.30 5.13 84.86 0.44 -1.87 16 20 N -0.94 -51.61 10.57 21.65 0.23 -51.39 16 21 Si 0.95 40.00 29.57 68.60 2.03 42.03 16 22 H -0.29 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.31 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 25 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.08 1.58 7.83 -2.39 -0.02 1.57 16 28 H 0.19 5.00 8.06 -2.91 -0.02 4.97 16 29 H 0.18 5.41 8.06 -2.91 -0.02 5.39 16 30 H 0.16 2.89 7.92 -2.38 -0.02 2.87 16 31 H 0.13 3.51 8.13 -2.39 -0.02 3.49 16 32 H 0.41 12.36 7.40 -92.71 -0.69 11.68 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 2.14 8.03 -2.39 -0.02 2.12 16 37 H 0.07 2.10 7.86 -2.39 -0.02 2.08 16 38 H -0.01 -0.55 7.44 -2.39 -0.02 -0.57 16 39 H 0.02 1.01 7.15 -2.39 -0.02 0.99 16 40 H 0.02 0.98 7.85 -2.39 -0.02 0.96 16 41 H 0.24 13.38 8.31 -92.70 -0.77 12.61 16 Total: -1.00 -70.70 343.79 3.74 -66.96 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.33 Total: 27.30 kcal Atomic # 6 Polarization: 21.47 SS G_CDS: 8.51 Total: 29.98 kcal Atomic # 7 Polarization: -133.21 SS G_CDS: -7.09 Total: -140.30 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.05 Total: -25.98 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -70.70 3.74 -66.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754332575.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.793 kcal (2) G-P(sol) polarization free energy of solvation -70.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds