Wall clock time and date at job start Fri Apr 10 2020 17:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30295 * 126.34712 * 2 1 4 4 N 1.28533 * 110.05111 * 179.82161 * 3 2 1 5 5 C 1.31215 * 109.85959 * 0.44933 * 4 3 2 6 6 N 1.38585 * 126.46736 * 179.73294 * 5 4 3 7 7 C 1.46905 * 110.99870 * 99.17376 * 6 5 4 8 8 C 1.46891 * 111.00474 * 335.21587 * 6 5 4 9 9 H 1.08997 * 109.47265 * 59.99888 * 8 6 5 10 10 C 1.53002 * 109.47016 * 300.00590 * 8 6 5 11 11 C 1.50699 * 109.47432 * 180.02562 * 8 6 5 12 12 H 1.08002 * 119.99712 * 5.53706 * 11 8 6 13 13 C 1.37869 * 120.00242 * 185.53501 * 11 8 6 14 14 N 1.31522 * 120.00210 * 8.86009 * 13 11 8 15 15 Si 1.86801 * 120.00285 * 188.85931 * 13 11 8 16 16 H 1.48497 * 109.47275 * 94.99511 * 15 13 11 17 17 H 1.48498 * 109.47155 * 214.99355 * 15 13 11 18 18 H 1.48501 * 109.46893 * 334.99350 * 15 13 11 19 19 N 1.36450 * 107.05460 * 359.73143 * 5 4 3 20 20 C 1.46503 * 127.13468 * 180.02562 * 19 5 4 21 21 C 1.52998 * 109.47138 * 264.76784 * 20 19 5 22 22 O 1.42895 * 115.55155 * 39.41321 * 21 20 19 23 23 C 1.52999 * 117.49357 * 253.74761 * 21 20 19 24 24 C 1.53001 * 117.49832 * 185.08939 * 21 20 19 25 25 H 1.08993 * 109.47241 * 269.69144 * 1 2 3 26 26 H 1.09003 * 109.46903 * 29.69241 * 1 2 3 27 27 H 1.09004 * 109.47054 * 149.69080 * 1 2 3 28 28 H 1.08998 * 109.47312 * 63.62903 * 7 6 5 29 29 H 1.09004 * 109.46549 * 183.62991 * 7 6 5 30 30 H 1.09003 * 109.46971 * 303.62988 * 7 6 5 31 31 H 1.09005 * 109.46880 * 184.42992 * 10 8 6 32 32 H 1.09005 * 109.47200 * 304.42299 * 10 8 6 33 33 H 1.09000 * 109.47576 * 64.42445 * 10 8 6 34 34 H 0.96996 * 120.00557 * 180.02562 * 14 13 11 35 35 H 1.09000 * 109.46984 * 24.76843 * 20 19 5 36 36 H 1.08996 * 109.47080 * 144.76480 * 20 19 5 37 37 H 0.96700 * 114.00326 * 325.59039 * 22 21 20 38 38 H 1.09001 * 117.50429 * 359.97438 * 23 21 20 39 39 H 1.09005 * 117.49828 * 145.02129 * 23 21 20 40 40 H 1.08998 * 117.49754 * 214.97488 * 24 21 20 41 41 H 1.09007 * 117.49775 * 359.97357 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5129 0.6888 0.0038 5 6 3.5945 -0.6208 -0.0033 6 7 4.7580 -1.3736 -0.0073 7 6 5.0812 -1.8504 1.3441 8 6 5.8764 -0.6112 -0.5780 9 1 6.0438 0.2876 0.0155 10 6 5.5424 -0.2166 -2.0180 11 6 7.1212 -1.4605 -0.5662 12 1 7.0668 -2.4942 -0.2579 13 6 8.3295 -0.9181 -0.9490 14 7 8.4331 0.3766 -1.1563 15 14 9.8198 -2.0218 -1.1733 16 1 9.9416 -2.4047 -2.6029 17 1 11.0430 -1.2941 -0.7498 18 1 9.6595 -3.2442 -0.3454 19 7 2.3174 -1.1013 -0.0059 20 6 1.9009 -2.5059 -0.0130 21 6 1.6301 -2.9503 -1.4517 22 8 2.5405 -2.4501 -2.4330 23 6 0.1703 -3.1345 -1.8712 24 6 1.0671 -4.3573 -1.6624 25 1 -0.3633 -0.0055 1.0276 26 1 -0.3633 0.8928 -0.5091 27 1 -0.3633 -0.8872 -0.5186 28 1 4.2954 -2.5220 1.6900 29 1 6.0318 -2.3835 1.3236 30 1 5.1562 -0.9996 2.0214 31 1 6.4024 0.2803 -2.4673 32 1 5.2982 -1.1103 -2.5923 33 1 4.6889 0.4613 -2.0204 34 1 9.2830 0.7582 -1.4260 35 1 2.6922 -3.1216 0.4147 36 1 0.9928 -2.6186 0.5792 37 1 2.8636 -1.5571 -2.2509 38 1 -0.5971 -2.9394 -1.1221 39 1 -0.0956 -2.8745 -2.8958 40 1 1.3909 -4.9013 -2.5497 41 1 0.8901 -4.9665 -0.7759 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001762503327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:27 Heat of formation + Delta-G solvation = 79.476525 kcal Electronic energy + Delta-G solvation = -23439.861510 eV Core-core repulsion = 20165.244891 eV Total energy + Delta-G solvation = -3274.616619 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.66165 -38.73465 -37.12866 -34.37898 -34.05780 -32.92355 -31.44116 -29.38855 -27.91918 -27.11938 -25.27989 -24.34154 -22.75832 -21.91451 -21.33751 -20.25880 -19.47714 -17.73410 -16.78613 -16.22284 -15.74401 -15.23807 -14.99012 -14.63184 -14.41052 -14.28515 -13.83222 -13.36523 -13.11805 -12.85055 -12.70616 -12.58691 -12.27425 -11.96028 -11.86071 -11.61095 -11.29808 -11.13669 -10.96027 -10.86832 -10.67217 -10.35686 -10.32484 -10.15186 -10.00976 -9.80710 -9.37880 -9.16686 -8.69448 -8.44728 -7.54484 -6.07184 -4.10980 2.06119 2.47382 3.28074 3.29677 3.36933 3.38537 3.49551 3.88174 4.26080 4.32243 4.45366 4.54056 4.55772 4.79946 4.98861 5.17669 5.24127 5.26985 5.35412 5.41407 5.46750 5.60973 5.65227 5.70979 5.87348 5.90548 6.08760 6.14503 6.29010 6.53008 6.82630 6.87411 6.99246 7.11623 7.41368 7.53423 7.61559 7.73985 7.89762 8.11708 8.43488 8.91591 9.23712 9.52534 11.01553 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021174 B = 0.005758 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.038685 B = 4861.745849 C = 5521.540307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.152 3.848 3 N -0.286 5.286 4 N -0.311 5.311 5 C 0.379 3.621 6 N -0.462 5.462 7 C 0.042 3.958 8 C 0.227 3.773 9 H 0.033 0.967 10 C -0.130 4.130 11 C -0.517 4.517 12 H 0.065 0.935 13 C 0.066 3.934 14 N -0.882 5.882 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 N -0.487 5.487 20 C 0.127 3.873 21 C 0.045 3.955 22 O -0.514 6.514 23 C -0.201 4.201 24 C -0.150 4.150 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.100 0.900 30 H 0.029 0.971 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.021 0.979 34 H 0.263 0.737 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.384 0.616 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.974 -7.813 2.778 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.115 4.115 3 N -0.126 5.126 4 N -0.154 5.154 5 C 0.023 3.977 6 N -0.188 5.188 7 C -0.105 4.105 8 C 0.123 3.877 9 H 0.050 0.950 10 C -0.188 4.188 11 C -0.555 4.555 12 H 0.083 0.917 13 C -0.137 4.137 14 N -0.520 5.520 15 Si 0.724 3.276 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.198 1.198 19 N -0.185 5.185 20 C 0.003 3.997 21 C 0.002 3.998 22 O -0.320 6.320 23 C -0.238 4.238 24 C -0.188 4.188 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.118 0.882 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.129 0.871 36 H 0.117 0.883 37 H 0.234 0.766 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.537 -7.184 2.169 18.160 hybrid contribution 0.743 -0.839 0.396 1.188 sum -15.794 -8.023 2.565 17.900 Atomic orbital electron populations 1.20135 0.84375 1.04155 1.03293 1.24651 0.96302 0.82747 1.07830 1.74012 0.97025 1.24134 1.17409 1.74859 1.10695 1.07910 1.21901 1.23199 0.85430 0.89080 0.99945 1.59223 1.01243 1.37177 1.21122 1.22311 1.02363 0.99162 0.86653 1.19359 0.83948 0.92403 0.91982 0.94951 1.21775 1.00073 0.98534 0.98439 1.21001 0.91104 0.97267 1.46175 0.91680 1.24901 0.98642 0.94878 0.95293 1.69996 1.25810 1.10217 1.45937 0.86514 0.82024 0.80507 0.78530 1.20619 1.21303 1.19842 1.46314 1.06619 1.07499 1.58052 1.21802 1.02828 0.79412 0.95652 1.21662 0.90325 0.99863 0.87943 1.86440 1.62346 1.37015 1.46246 1.23736 0.93773 1.02723 1.03584 1.23207 1.01254 0.90072 1.04239 0.90289 0.89005 0.90806 0.93826 0.88165 0.95255 0.90759 0.94848 0.96041 0.92728 0.87144 0.88299 0.76566 0.88281 0.88032 0.87641 0.87664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 10.19 36.00 0.37 -0.22 16 2 C 0.15 2.35 8.07 -154.02 -1.24 1.10 16 3 N -0.29 -5.68 12.18 32.99 0.40 -5.28 16 4 N -0.31 -6.97 10.26 30.31 0.31 -6.66 16 5 C 0.38 7.56 4.90 -318.88 -1.56 6.00 16 6 N -0.46 -9.77 4.63 -176.08 -0.81 -10.59 16 7 C 0.04 0.80 9.30 60.07 0.56 1.36 16 8 C 0.23 5.75 1.61 -68.87 -0.11 5.64 16 9 H 0.03 0.95 7.84 -51.93 -0.41 0.54 16 10 C -0.13 -3.27 8.83 37.16 0.33 -2.94 16 11 C -0.52 -13.73 7.61 -34.44 -0.26 -13.99 16 12 H 0.07 1.69 6.69 -52.49 -0.35 1.34 16 13 C 0.07 1.80 5.17 -17.82 -0.09 1.70 16 14 N -0.88 -25.30 12.13 55.43 0.67 -24.63 16 15 Si 0.90 20.96 29.55 -169.99 -5.02 15.94 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 N -0.49 -7.60 2.09 -114.09 -0.24 -7.84 16 20 C 0.13 1.50 6.05 -4.04 -0.02 1.48 16 21 C 0.05 0.56 3.26 -90.62 -0.30 0.27 16 22 O -0.51 -8.75 13.85 -35.23 -0.49 -9.23 16 23 C -0.20 -1.86 9.43 -26.69 -0.25 -2.12 16 24 C -0.15 -1.44 10.20 -26.69 -0.27 -1.72 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.57 6.50 -51.93 -0.34 0.24 16 28 H 0.04 0.66 7.15 -51.93 -0.37 0.29 16 29 H 0.10 1.95 6.10 -51.93 -0.32 1.63 16 30 H 0.03 0.57 8.13 -51.93 -0.42 0.15 16 31 H 0.07 2.03 6.79 -51.93 -0.35 1.67 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.02 0.52 6.52 -51.93 -0.34 0.18 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.11 1.35 7.09 -51.93 -0.37 0.99 16 36 H 0.10 0.82 7.86 -51.93 -0.41 0.41 16 37 H 0.38 7.14 7.05 45.56 0.32 7.46 16 38 H 0.10 0.67 7.38 -51.93 -0.38 0.29 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -31.99 332.90 -8.43 -40.42 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.41 Total: 6.30 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -2.86 Total: -3.44 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.33 Total: -54.99 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.49 Total: -9.23 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.99 -8.43 -40.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001762503327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.893 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds