Wall clock time and date at job start Fri Apr 10 2020 17:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30295 * 126.34712 * 2 1 4 4 N 1.28533 * 110.05111 * 179.82161 * 3 2 1 5 5 C 1.31215 * 109.85959 * 0.44933 * 4 3 2 6 6 N 1.38585 * 126.46736 * 179.73294 * 5 4 3 7 7 C 1.46905 * 110.99870 * 99.17376 * 6 5 4 8 8 C 1.46891 * 111.00474 * 335.21587 * 6 5 4 9 9 H 1.08997 * 109.47265 * 59.99888 * 8 6 5 10 10 C 1.53002 * 109.47016 * 300.00590 * 8 6 5 11 11 C 1.50699 * 109.47432 * 180.02562 * 8 6 5 12 12 H 1.08002 * 119.99712 * 5.53706 * 11 8 6 13 13 C 1.37869 * 120.00242 * 185.53501 * 11 8 6 14 14 N 1.31522 * 120.00210 * 8.86009 * 13 11 8 15 15 Si 1.86801 * 120.00285 * 188.85931 * 13 11 8 16 16 H 1.48497 * 109.47275 * 94.99511 * 15 13 11 17 17 H 1.48498 * 109.47155 * 214.99355 * 15 13 11 18 18 H 1.48501 * 109.46893 * 334.99350 * 15 13 11 19 19 N 1.36450 * 107.05460 * 359.73143 * 5 4 3 20 20 C 1.46503 * 127.13468 * 180.02562 * 19 5 4 21 21 C 1.52998 * 109.47138 * 264.76784 * 20 19 5 22 22 O 1.42895 * 115.55155 * 39.41321 * 21 20 19 23 23 C 1.52999 * 117.49357 * 253.74761 * 21 20 19 24 24 C 1.53001 * 117.49832 * 185.08939 * 21 20 19 25 25 H 1.08993 * 109.47241 * 269.69144 * 1 2 3 26 26 H 1.09003 * 109.46903 * 29.69241 * 1 2 3 27 27 H 1.09004 * 109.47054 * 149.69080 * 1 2 3 28 28 H 1.08998 * 109.47312 * 63.62903 * 7 6 5 29 29 H 1.09004 * 109.46549 * 183.62991 * 7 6 5 30 30 H 1.09003 * 109.46971 * 303.62988 * 7 6 5 31 31 H 1.09005 * 109.46880 * 184.42992 * 10 8 6 32 32 H 1.09005 * 109.47200 * 304.42299 * 10 8 6 33 33 H 1.09000 * 109.47576 * 64.42445 * 10 8 6 34 34 H 0.96996 * 120.00557 * 180.02562 * 14 13 11 35 35 H 1.09000 * 109.46984 * 24.76843 * 20 19 5 36 36 H 1.08996 * 109.47080 * 144.76480 * 20 19 5 37 37 H 0.96700 * 114.00326 * 325.59039 * 22 21 20 38 38 H 1.09001 * 117.50429 * 359.97438 * 23 21 20 39 39 H 1.09005 * 117.49828 * 145.02129 * 23 21 20 40 40 H 1.08998 * 117.49754 * 214.97488 * 24 21 20 41 41 H 1.09007 * 117.49775 * 359.97357 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5129 0.6888 0.0038 5 6 3.5945 -0.6208 -0.0033 6 7 4.7580 -1.3736 -0.0073 7 6 5.0812 -1.8504 1.3441 8 6 5.8764 -0.6112 -0.5780 9 1 6.0438 0.2876 0.0155 10 6 5.5424 -0.2166 -2.0180 11 6 7.1212 -1.4605 -0.5662 12 1 7.0668 -2.4942 -0.2579 13 6 8.3295 -0.9181 -0.9490 14 7 8.4331 0.3766 -1.1563 15 14 9.8198 -2.0218 -1.1733 16 1 9.9416 -2.4047 -2.6029 17 1 11.0430 -1.2941 -0.7498 18 1 9.6595 -3.2442 -0.3454 19 7 2.3174 -1.1013 -0.0059 20 6 1.9009 -2.5059 -0.0130 21 6 1.6301 -2.9503 -1.4517 22 8 2.5405 -2.4501 -2.4330 23 6 0.1703 -3.1345 -1.8712 24 6 1.0671 -4.3573 -1.6624 25 1 -0.3633 -0.0055 1.0276 26 1 -0.3633 0.8928 -0.5091 27 1 -0.3633 -0.8872 -0.5186 28 1 4.2954 -2.5220 1.6900 29 1 6.0318 -2.3835 1.3236 30 1 5.1562 -0.9996 2.0214 31 1 6.4024 0.2803 -2.4673 32 1 5.2982 -1.1103 -2.5923 33 1 4.6889 0.4613 -2.0204 34 1 9.2830 0.7582 -1.4260 35 1 2.6922 -3.1216 0.4147 36 1 0.9928 -2.6186 0.5792 37 1 2.8636 -1.5571 -2.2509 38 1 -0.5971 -2.9394 -1.1221 39 1 -0.0956 -2.8745 -2.8958 40 1 1.3909 -4.9013 -2.5497 41 1 0.8901 -4.9665 -0.7759 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001762503327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:26 Heat of formation + Delta-G solvation = 57.372977 kcal Electronic energy + Delta-G solvation = -23440.819992 eV Core-core repulsion = 20165.244891 eV Total energy + Delta-G solvation = -3275.575101 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.02508 -39.68522 -38.84970 -35.64427 -35.12437 -34.82500 -32.67194 -31.32179 -29.14451 -28.25980 -27.16160 -26.03745 -23.73598 -23.37549 -22.42446 -21.41769 -21.07470 -18.95899 -18.33239 -17.87044 -17.27346 -16.60668 -16.46256 -15.92928 -15.56259 -15.49470 -15.22592 -14.84659 -14.32919 -14.23582 -13.95679 -13.56719 -13.54051 -13.35812 -13.06417 -12.90907 -12.83590 -12.67916 -12.50157 -12.33010 -12.26572 -12.17610 -12.07832 -11.89455 -11.47781 -11.07745 -10.95193 -10.60959 -10.29468 -10.23709 -9.20851 -8.16352 -6.27274 0.76314 1.25128 1.43678 1.45946 1.55837 1.86411 2.41061 2.65386 2.95066 3.00647 3.16062 3.40096 3.49922 3.65593 3.97878 4.06042 4.10796 4.24102 4.39993 4.52219 4.56597 4.65883 4.71409 4.75155 4.76289 4.79118 4.90766 4.93814 4.99041 5.03289 5.06875 5.11549 5.23191 5.41677 5.53572 5.64516 5.85025 5.97087 6.11489 6.37382 6.60120 6.83579 7.40445 7.82780 8.93266 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021174 B = 0.005758 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.038685 B = 4861.745849 C = 5521.540307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.180 3.820 3 N -0.336 5.336 4 N -0.363 5.363 5 C 0.362 3.638 6 N -0.457 5.457 7 C 0.044 3.956 8 C 0.240 3.760 9 H -0.017 1.017 10 C -0.109 4.109 11 C -0.524 4.524 12 H 0.072 0.928 13 C 0.015 3.985 14 N -0.920 5.920 15 Si 0.965 3.035 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.259 1.259 19 N -0.475 5.475 20 C 0.124 3.876 21 C 0.004 3.996 22 O -0.543 6.543 23 C -0.178 4.178 24 C -0.140 4.140 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.012 0.988 31 H 0.046 0.954 32 H 0.036 0.964 33 H 0.018 0.982 34 H 0.263 0.737 35 H 0.105 0.895 36 H 0.148 0.852 37 H 0.370 0.630 38 H 0.137 0.863 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.798 -10.616 3.638 22.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.088 4.088 3 N -0.175 5.175 4 N -0.205 5.205 5 C 0.005 3.995 6 N -0.182 5.182 7 C -0.103 4.103 8 C 0.134 3.866 9 H 0.001 0.999 10 C -0.168 4.168 11 C -0.563 4.563 12 H 0.090 0.910 13 C -0.185 4.185 14 N -0.559 5.559 15 Si 0.790 3.210 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.183 1.183 19 N -0.172 5.172 20 C 0.002 3.998 21 C -0.038 4.038 22 O -0.349 6.349 23 C -0.215 4.215 24 C -0.177 4.177 25 H 0.127 0.873 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.030 0.970 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.124 0.876 36 H 0.166 0.834 37 H 0.218 0.782 38 H 0.155 0.845 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.407 -10.029 3.040 22.055 hybrid contribution 1.429 0.009 0.142 1.436 sum -17.977 -10.020 3.182 20.826 Atomic orbital electron populations 1.20492 0.79768 1.05921 1.05717 1.25780 0.98299 0.81539 1.03231 1.73913 0.96670 1.26321 1.20618 1.74714 1.12690 1.09777 1.23361 1.22946 0.86415 0.88766 1.01367 1.59117 1.00585 1.36321 1.22209 1.22357 1.03508 0.99002 0.85418 1.18923 0.85589 0.90876 0.91180 0.99927 1.21516 0.98558 0.98144 0.98554 1.21296 0.91714 0.97555 1.45691 0.90972 1.25769 1.01744 0.96048 0.94932 1.70147 1.26525 1.12155 1.47072 0.85441 0.78140 0.78951 0.78487 1.20429 1.21215 1.18308 1.46414 1.04742 1.09226 1.56823 1.22196 1.04731 0.76736 0.96146 1.22104 0.91809 1.02428 0.87425 1.86418 1.63969 1.36098 1.48406 1.23845 0.92369 1.01174 1.04150 1.23383 0.99876 0.89351 1.05089 0.87318 0.88371 0.87871 0.89658 0.89076 0.96965 0.93532 0.94489 0.96294 0.92809 0.87646 0.83406 0.78177 0.84506 0.88957 0.88930 0.84407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.19 71.24 0.73 -0.18 16 2 C 0.18 5.22 8.07 137.64 1.11 6.33 16 3 N -0.34 -13.54 12.18 -49.54 -0.60 -14.14 16 4 N -0.36 -16.99 10.26 -58.00 -0.60 -17.58 16 5 C 0.36 14.71 4.90 260.11 1.27 15.99 16 6 N -0.46 -19.80 4.63 -711.00 -3.29 -23.09 16 7 C 0.04 1.66 9.30 127.69 1.19 2.85 16 8 C 0.24 12.78 1.61 44.17 0.07 12.85 16 9 H -0.02 -1.06 7.84 -2.39 -0.02 -1.08 16 10 C -0.11 -5.82 8.83 71.98 0.64 -5.18 16 11 C -0.52 -28.59 7.61 25.60 0.19 -28.40 16 12 H 0.07 3.76 6.69 -2.91 -0.02 3.74 16 13 C 0.01 0.82 5.17 84.65 0.44 1.26 16 14 N -0.92 -55.02 12.13 21.45 0.26 -54.76 16 15 Si 0.96 43.54 29.55 68.60 2.03 45.57 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 19 N -0.48 -14.04 2.09 -514.86 -1.08 -15.11 16 20 C 0.12 2.47 6.05 86.38 0.52 3.00 16 21 C 0.00 0.10 3.26 -10.79 -0.04 0.06 16 22 O -0.54 -18.36 13.85 -148.98 -2.06 -20.42 16 23 C -0.18 -2.49 9.43 30.62 0.29 -2.20 16 24 C -0.14 -2.14 10.20 30.62 0.31 -1.83 16 25 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.10 0.98 6.50 -2.39 -0.02 0.96 16 28 H 0.08 2.45 7.15 -2.39 -0.02 2.44 16 29 H 0.09 3.56 6.10 -2.39 -0.01 3.55 16 30 H 0.01 0.48 8.13 -2.39 -0.02 0.46 16 31 H 0.05 2.68 6.79 -2.38 -0.02 2.67 16 32 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.02 0.97 6.52 -2.39 -0.02 0.95 16 34 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.11 2.23 7.09 -2.39 -0.02 2.21 16 36 H 0.15 1.49 7.86 -2.39 -0.02 1.47 16 37 H 0.37 14.11 7.05 -74.06 -0.52 13.58 16 38 H 0.14 0.88 7.38 -2.39 -0.02 0.87 16 39 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.14 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -76.35 332.90 1.91 -74.44 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.52 Total: 20.55 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 6.73 Total: 4.55 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -5.31 Total: -124.69 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -2.06 Total: -20.42 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -76.35 1.91 -74.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001762503327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.812 kcal (2) G-P(sol) polarization free energy of solvation -76.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds