Wall clock time and date at job start Fri Apr 10 2020 17:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47086 * 2 1 4 4 C 1.53005 * 109.46949 * 239.99949 * 2 1 3 5 5 C 1.50700 * 109.46738 * 60.00322 * 4 2 1 6 6 H 1.08000 * 120.00637 * 359.97438 * 5 4 2 7 7 C 1.37887 * 119.99877 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99794 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00022 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46986 * 59.99828 * 9 7 5 11 11 H 1.48499 * 109.46813 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47192 * 299.99686 * 9 7 5 13 13 C 1.52994 * 109.46938 * 120.00209 * 2 1 3 14 14 N 1.46492 * 109.47260 * 299.99578 * 13 2 1 15 15 C 1.34779 * 120.00139 * 179.97438 * 14 13 2 16 16 O 1.21590 * 120.00129 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00008 * 180.02562 * 15 14 13 18 18 C 1.46500 * 119.99948 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47224 * 180.02562 * 18 17 15 20 20 C 1.30525 * 124.44870 * 94.97856 * 19 18 17 21 21 C 1.51101 * 111.10317 * 180.26748 * 20 19 18 22 22 C 1.54803 * 104.64610 * 343.19479 * 21 20 19 23 23 C 1.51099 * 124.44623 * 274.99750 * 19 18 17 24 24 H 1.08996 * 109.46598 * 299.99855 * 1 2 3 25 25 H 1.09000 * 109.46896 * 59.99701 * 1 2 3 26 26 H 1.09000 * 109.46846 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46846 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47497 * 299.99931 * 3 2 1 29 29 H 1.08996 * 109.47284 * 60.00565 * 3 2 1 30 30 H 1.09000 * 109.47278 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47320 * 300.00546 * 4 2 1 32 32 H 0.96999 * 120.00048 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.47043 * 179.97438 * 13 2 1 34 34 H 1.09000 * 109.47260 * 60.00367 * 13 2 1 35 35 H 0.97000 * 120.00275 * 0.02562 * 14 13 2 36 36 H 0.96994 * 119.99977 * 0.02562 * 17 15 14 37 37 H 1.09003 * 109.47247 * 60.00117 * 18 17 15 38 38 H 1.08999 * 109.47322 * 300.00266 * 18 17 15 39 39 H 1.08002 * 124.44516 * 359.97438 * 20 19 18 40 40 H 1.08996 * 110.39014 * 102.12741 * 21 20 19 41 41 H 1.08993 * 110.38575 * 224.50514 * 21 20 19 42 42 H 1.09005 * 111.24700 * 266.87567 * 22 21 20 43 43 H 1.08994 * 110.89817 * 142.88949 * 22 21 20 44 44 H 1.08999 * 110.39225 * 315.23024 * 23 19 18 45 45 H 1.09001 * 110.38605 * 77.49232 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8712 -0.4815 -3.7321 8 7 2.6280 -1.5503 -3.8528 9 14 1.2479 0.3988 -5.2572 10 1 1.7419 1.7992 -5.2570 11 1 1.7430 -0.3012 -6.4697 12 1 -0.2371 0.3976 -5.2573 13 6 2.0400 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4453 15 6 1.8769 -0.4915 3.6694 16 8 2.5759 -1.4802 3.7810 17 7 1.4273 0.1436 4.7699 18 6 1.7812 -0.3570 6.1005 19 6 1.1565 0.5243 7.1513 20 6 0.0131 0.2832 7.7327 21 6 -0.3281 1.3644 8.7315 22 6 1.0096 2.1022 8.9819 23 6 1.7716 1.8033 7.6699 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1300 -0.7209 -1.2496 31 1 1.6766 -1.7489 -1.2494 32 1 2.8630 -1.8812 -4.7338 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -1.7490 1.2491 35 1 0.9938 0.7578 2.3564 36 1 0.8694 0.9320 4.6809 37 1 2.8651 -0.3480 6.2157 38 1 1.4121 -1.3762 6.2153 39 1 -0.6099 -0.5739 7.5235 40 1 -1.0687 2.0468 8.3145 41 1 -0.6961 0.9232 9.6577 42 1 1.5345 1.6873 9.8424 43 1 0.8461 3.1728 9.1043 44 1 2.8331 1.6598 7.8715 45 1 1.6280 2.6116 6.9529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595627871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:40 Heat of formation + Delta-G solvation = -39.749861 kcal Electronic energy + Delta-G solvation = -21662.864286 eV Core-core repulsion = 18486.617966 eV Total energy + Delta-G solvation = -3176.246320 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -39.95663 -38.91926 -37.18243 -34.54324 -33.52928 -32.06066 -30.13211 -28.73327 -27.10735 -26.48705 -26.31204 -24.77541 -22.73953 -21.25221 -20.64849 -18.98872 -18.39633 -17.53994 -16.47713 -16.14166 -15.82662 -15.39898 -15.32336 -14.54905 -14.07351 -14.01620 -13.93913 -13.29344 -13.08253 -13.00688 -12.72087 -12.23135 -12.12815 -12.04254 -11.93017 -11.56180 -11.48487 -11.42207 -11.11743 -10.98531 -10.85952 -10.60945 -10.37084 -10.24723 -10.07420 -9.84776 -9.22965 -9.13618 -9.11074 -8.91369 -8.50561 -8.34003 -5.98128 -3.99416 1.65820 3.08323 3.32926 3.38370 3.39577 3.44852 4.19036 4.22370 4.45135 4.53778 4.66276 4.75099 5.02199 5.19467 5.34240 5.37170 5.40028 5.46832 5.51881 5.57666 5.64032 5.66670 5.67574 5.77950 5.83781 6.18779 6.20604 6.25017 6.31198 6.44388 6.45441 6.55207 6.63107 6.65175 6.83776 7.08167 7.09961 7.09997 7.18564 7.66310 7.79163 8.00547 8.22798 8.42441 8.82936 9.05161 9.63374 11.13297 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.040739 B = 0.002667 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.130322 B =10497.284448 C =10776.857216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.147 3.853 14 N -0.737 5.737 15 C 0.699 3.301 16 O -0.595 6.595 17 N -0.748 5.748 18 C 0.189 3.811 19 C -0.155 4.155 20 C -0.140 4.140 21 C -0.102 4.102 22 C -0.125 4.125 23 C -0.092 4.092 24 H 0.028 0.972 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.260 0.740 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.393 0.607 36 H 0.394 0.606 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.126 0.874 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.557 8.087 23.538 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.023 3.977 14 N -0.392 5.392 15 C 0.399 3.601 16 O -0.473 6.473 17 N -0.405 5.405 18 C 0.065 3.935 19 C -0.155 4.155 20 C -0.160 4.160 21 C -0.139 4.139 22 C -0.163 4.163 23 C -0.130 4.130 24 H 0.047 0.953 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.228 0.772 36 H 0.227 0.773 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.144 0.856 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.791 7.028 23.482 24.975 hybrid contribution -0.843 1.088 -1.043 1.727 sum -5.634 8.116 22.439 24.518 Atomic orbital electron populations 1.21751 0.95335 1.01136 1.00103 1.20909 0.95434 0.95852 0.95061 1.21749 1.00544 0.95925 1.00102 1.19091 0.96399 0.95247 0.89429 1.21145 1.31193 1.12071 0.90530 0.92340 1.25019 0.95345 0.95097 0.99067 1.69956 1.36854 1.23038 1.23527 0.86707 0.79119 0.79749 0.82688 1.20350 1.21415 1.20356 1.21482 0.98657 0.95629 0.81885 1.45365 1.56137 1.33160 1.04540 1.16030 0.80508 0.82999 0.80578 1.90917 1.42840 1.27573 1.86007 1.45126 1.57372 1.33391 1.04570 1.19707 0.99569 0.95681 0.78503 1.22080 0.97220 0.97421 0.98823 1.23315 0.96289 0.98829 0.97530 1.21414 0.98003 0.96173 0.98337 1.22479 0.95760 1.00471 0.97570 1.21291 1.00027 0.95114 0.96524 0.95326 0.91517 0.93377 0.93374 0.91519 0.95325 0.96294 0.96301 0.92991 0.92037 0.92051 0.77203 0.77270 0.91122 0.91145 0.85615 0.90419 0.91045 0.91016 0.90922 0.90981 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.05 37.16 0.30 -1.93 16 2 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 3 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.60 7.65 -34.44 -0.26 -13.87 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.15 2.68 4.56 -4.05 -0.02 2.66 16 14 N -0.74 -11.08 4.96 -65.23 -0.32 -11.40 16 15 C 0.70 11.09 8.57 -86.91 -0.74 10.35 16 16 O -0.59 -12.05 16.34 5.29 0.09 -11.96 16 17 N -0.75 -8.66 5.55 -66.41 -0.37 -9.03 16 18 C 0.19 2.01 6.10 -5.19 -0.03 1.98 16 19 C -0.15 -1.27 5.53 -100.74 -0.56 -1.83 16 20 C -0.14 -1.04 10.58 -35.70 -0.38 -1.42 16 21 C -0.10 -0.61 6.82 -26.74 -0.18 -0.79 16 22 C -0.13 -0.73 7.20 -24.92 -0.18 -0.91 16 23 C -0.09 -0.65 6.76 -26.83 -0.18 -0.83 16 24 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 25 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 29 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.39 4.94 6.18 -40.82 -0.25 4.69 16 36 H 0.39 3.58 8.48 -40.82 -0.35 3.23 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.81 8.12 -51.93 -0.42 0.38 16 39 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -31.58 358.53 -9.49 -41.07 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.77 Total: 3.22 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -2.23 Total: -7.74 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.04 Total: -46.23 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.58 -9.49 -41.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595627871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.320 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds