Wall clock time and date at job start Fri Apr 10 2020 17:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47051 * 2 1 4 4 C 1.47195 * 109.46957 * 239.99850 * 2 1 3 5 5 N 2.60798 * 109.47224 * 239.99973 * 2 1 3 6 6 C 1.52997 * 109.46793 * 120.00098 * 2 1 3 7 7 C 1.53003 * 109.47080 * 182.94596 * 6 2 1 8 8 H 1.09008 * 109.47024 * 54.94686 * 7 6 2 9 9 O 1.42905 * 109.46916 * 294.95270 * 7 6 2 10 10 C 1.52990 * 109.47382 * 174.95519 * 7 6 2 11 11 N 1.46505 * 109.47288 * 185.00075 * 10 7 6 12 12 C 1.36939 * 119.99809 * 269.99658 * 11 10 7 13 13 H 1.08000 * 119.99944 * 144.79173 * 12 11 10 14 14 C 1.38809 * 120.00013 * 324.79403 * 12 11 10 15 15 N 1.31622 * 120.00177 * 337.05713 * 14 12 11 16 16 Si 1.86804 * 120.00054 * 157.05738 * 14 12 11 17 17 H 1.48493 * 109.46879 * 59.99898 * 16 14 12 18 18 H 1.48499 * 109.47005 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47116 * 299.99866 * 16 14 12 20 20 C 1.46500 * 120.00119 * 89.99749 * 11 10 7 21 21 C 1.55243 * 110.57666 * 236.52791 * 20 11 10 22 22 C 1.54890 * 102.58615 * 203.33886 * 21 20 11 23 23 C 1.54270 * 104.31291 * 37.93093 * 22 21 20 24 24 C 1.53872 * 106.59782 * 336.32397 * 23 22 21 25 25 H 1.09001 * 109.47250 * 300.00269 * 1 2 3 26 26 H 1.09005 * 109.47087 * 60.00253 * 1 2 3 27 27 H 1.09001 * 109.47433 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46818 * 186.22513 * 3 2 1 29 29 H 1.09002 * 109.46944 * 306.22025 * 3 2 1 30 30 H 1.09003 * 109.46865 * 66.22332 * 3 2 1 31 31 H 1.08996 * 109.47355 * 62.94728 * 6 2 1 32 32 H 1.08996 * 109.47123 * 302.93964 * 6 2 1 33 33 H 0.96695 * 114.00015 * 300.00235 * 9 7 6 34 34 H 1.08993 * 109.47829 * 64.99693 * 10 7 6 35 35 H 1.09004 * 109.46823 * 304.99426 * 10 7 6 36 36 H 0.96996 * 120.00179 * 180.02562 * 15 14 12 37 37 H 1.08996 * 110.43717 * 359.10849 * 20 11 10 38 38 H 1.08994 * 110.89703 * 85.05129 * 21 20 11 39 39 H 1.08992 * 110.76576 * 321.56717 * 21 20 11 40 40 H 1.09005 * 110.48599 * 279.19154 * 22 21 20 41 41 H 1.08993 * 110.48831 * 156.67360 * 22 21 20 42 42 H 1.08996 * 110.03361 * 95.61200 * 23 22 21 43 43 H 1.09000 * 110.03025 * 216.99192 * 23 22 21 44 44 H 1.09006 * 110.03465 * 119.28290 * 24 23 22 45 45 H 1.09001 * 110.03198 * 240.66576 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6939 -1.2018 5 7 2.3994 -1.2294 -2.1294 6 6 2.0399 -0.7213 1.2492 7 6 3.5682 -0.6574 1.2869 8 1 3.8901 0.3820 1.2224 9 8 4.1029 -1.3910 0.1832 10 6 4.0720 -1.2672 2.5965 11 7 5.5245 -1.0988 2.6866 12 6 6.3579 -2.0623 2.1841 13 1 7.2936 -1.7806 1.7243 14 6 6.0000 -3.4010 2.2658 15 7 5.1392 -3.7975 3.1791 16 14 6.7400 -4.6397 1.0795 17 1 8.2167 -4.6530 1.2352 18 1 6.1995 -5.9911 1.3740 19 1 6.3925 -4.2598 -0.3134 20 6 6.0855 0.1002 3.3143 21 6 7.0365 0.8360 2.3323 22 6 7.9528 1.6395 3.2882 23 6 8.1785 0.6931 4.4854 24 6 6.9912 -0.2856 4.5019 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1243 1.4445 -0.1114 29 1 1.5886 1.9875 -0.8291 30 1 1.7705 1.9232 0.9405 31 1 1.7204 -1.7630 1.2232 32 1 1.6342 -0.2388 2.1384 33 1 3.8564 -2.3260 0.1760 34 1 3.8271 -2.3289 2.6209 35 1 3.5952 -0.7648 3.4382 36 1 4.8894 -4.7330 3.2365 37 1 5.2878 0.7661 3.6433 38 1 6.4779 1.5059 1.6787 39 1 7.6180 0.1218 1.7494 40 1 7.4566 2.5541 3.6132 41 1 8.9002 1.8726 2.8023 42 1 9.1121 0.1455 4.3576 43 1 8.2051 1.2646 5.4132 44 1 7.3487 -1.3083 4.3820 45 1 6.4414 -0.1898 5.4382 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598591910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:03 Heat of formation + Delta-G solvation = -24.976635 kcal Electronic energy + Delta-G solvation = -23549.243194 eV Core-core repulsion = 20373.637489 eV Total energy + Delta-G solvation = -3175.605705 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.81155 -37.58914 -35.85229 -34.47943 -33.74832 -31.07631 -29.48033 -27.84317 -27.42696 -26.70556 -25.65811 -23.17997 -21.89265 -20.62879 -19.78657 -19.10298 -17.01045 -16.20799 -15.64251 -15.09002 -14.82588 -14.74831 -14.26301 -14.16890 -14.00115 -13.41670 -13.20173 -12.95114 -12.78723 -12.53463 -12.33655 -12.17668 -11.90427 -11.57400 -11.38593 -11.19390 -11.17253 -11.06493 -10.82650 -10.76455 -10.67216 -10.53921 -10.39235 -10.29429 -10.07782 -9.97149 -9.78262 -9.66421 -9.46777 -8.95373 -8.39043 -6.48489 -5.72605 -3.24228 3.21867 3.27711 3.41916 3.47798 3.55197 4.15591 4.52855 4.80140 4.91820 5.01419 5.28372 5.32345 5.39192 5.43671 5.49316 5.54912 5.57387 5.67337 5.72988 5.83366 5.91672 5.92438 6.04924 6.16384 6.19197 6.22306 6.23929 6.27163 6.37338 6.41844 6.52789 6.55807 6.65630 6.67243 6.82679 6.91031 7.07038 7.16854 7.39180 7.62540 7.91417 8.04890 8.52649 8.60651 9.25461 9.89090 10.44524 11.27070 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013381 B = 0.007018 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.943480 B = 3989.006597 C = 5249.879030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.039 3.961 3 C -0.142 4.142 4 C 0.226 3.774 5 N -0.439 5.439 6 C -0.142 4.142 7 C 0.080 3.920 8 H 0.085 0.915 9 O -0.542 6.542 10 C 0.115 3.885 11 N -0.568 5.568 12 C -0.224 4.224 13 H 0.058 0.942 14 C 0.007 3.993 15 N -0.894 5.894 16 Si 0.887 3.113 17 H -0.284 1.284 18 H -0.294 1.294 19 H -0.281 1.281 20 C 0.172 3.828 21 C -0.133 4.133 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.134 4.134 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.363 0.637 34 H 0.101 0.899 35 H 0.028 0.972 36 H 0.252 0.748 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.082 0.918 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.232 10.483 0.481 12.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.035 3.965 3 C -0.200 4.200 4 C -0.092 4.092 5 N -0.115 5.115 6 C -0.182 4.182 7 C 0.019 3.981 8 H 0.103 0.897 9 O -0.345 6.345 10 C -0.012 4.012 11 N -0.286 5.286 12 C -0.354 4.354 13 H 0.076 0.924 14 C -0.191 4.191 15 N -0.538 5.538 16 Si 0.717 3.283 17 H -0.211 1.211 18 H -0.220 1.220 19 H -0.207 1.207 20 C 0.064 3.936 21 C -0.173 4.173 22 C -0.161 4.161 23 C -0.158 4.158 24 C -0.173 4.173 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.209 0.791 34 H 0.118 0.882 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.100 0.900 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.452 10.065 -1.015 11.998 hybrid contribution 0.033 -1.069 -0.021 1.070 sum -6.419 8.996 -1.035 11.099 Atomic orbital electron populations 1.21892 0.92298 1.02851 1.02825 1.18214 0.95586 0.94853 0.87844 1.21931 1.02679 0.92832 1.02606 1.28747 0.92841 0.93716 0.93908 1.81108 1.08609 1.08961 1.12808 1.22527 0.99500 1.00914 0.95270 1.22860 0.88284 0.96596 0.90399 0.89721 1.86547 1.76834 1.24426 1.46709 1.21642 0.84493 1.03349 0.91693 1.43706 1.00656 1.18584 1.65638 1.18779 1.02472 0.85093 1.29095 0.92400 1.24950 0.99747 0.96968 0.97446 1.69988 1.37063 1.15180 1.31614 0.86613 0.78997 0.80426 0.82251 1.21070 1.22025 1.20741 1.21293 0.93107 0.88599 0.90557 1.22927 0.98234 0.98213 0.97879 1.22287 0.99118 0.97797 0.96907 1.22064 0.99238 0.97438 0.97072 1.22551 0.95810 1.00546 0.98404 0.90714 0.92164 0.91933 0.91017 0.92330 0.90813 0.91099 0.89691 0.79116 0.88194 0.95315 0.93837 0.93253 0.93296 0.90884 0.92804 0.93041 0.92816 0.93420 0.89970 0.93875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.43 37.16 0.31 -0.94 16 2 C 0.04 0.46 0.74 -157.30 -0.12 0.34 16 3 C -0.14 -1.50 7.81 37.16 0.29 -1.21 16 4 C 0.23 3.56 11.49 -20.76 -0.24 3.32 16 5 N -0.44 -8.25 18.41 42.15 0.78 -7.47 16 6 C -0.14 -1.88 4.06 -26.73 -0.11 -1.99 16 7 C 0.08 1.39 2.90 -26.73 -0.08 1.31 16 8 H 0.08 1.46 6.24 -51.92 -0.32 1.14 16 9 O -0.54 -11.14 10.40 -35.23 -0.37 -11.51 16 10 C 0.12 2.38 4.95 -4.04 -0.02 2.36 16 11 N -0.57 -12.87 2.46 -163.57 -0.40 -13.27 16 12 C -0.22 -5.76 7.40 -15.06 -0.11 -5.87 16 13 H 0.06 1.56 6.56 -52.49 -0.34 1.22 16 14 C 0.01 0.19 4.94 -17.43 -0.09 0.11 16 15 N -0.89 -24.29 11.40 55.49 0.63 -23.66 16 16 Si 0.89 21.65 29.61 -169.99 -5.03 16.62 16 17 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 20 C 0.17 3.41 3.39 -66.08 -0.22 3.19 16 21 C -0.13 -2.44 6.45 -24.55 -0.16 -2.60 16 22 C -0.12 -1.91 6.82 -25.07 -0.17 -2.08 16 23 C -0.12 -1.96 6.80 -25.61 -0.17 -2.13 16 24 C -0.13 -2.61 6.42 -25.62 -0.16 -2.77 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.91 6.62 -51.93 -0.34 0.57 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.36 7.60 9.04 45.56 0.41 8.01 16 34 H 0.10 2.38 5.40 -51.93 -0.28 2.10 16 35 H 0.03 0.56 7.95 -51.93 -0.41 0.14 16 36 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 37 H 0.05 0.91 7.86 -51.93 -0.41 0.51 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.53 6.44 -51.93 -0.33 1.19 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.90 7.06 -51.93 -0.37 1.53 16 45 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 353.52 15.07 5.33 5.33 Total: -1.00 -29.12 353.52 -7.15 -36.26 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.03 Total: 6.67 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -1.05 Total: -8.97 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 1.01 Total: -44.40 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -0.37 Total: -11.51 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.12 -7.15 -36.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598591910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.285 kcal (2) G-P(sol) polarization free energy of solvation -29.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds