Wall clock time and date at job start Fri Apr 10 2020 17:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47193 * 2 1 4 4 C 1.47206 * 109.46974 * 240.00020 * 2 1 3 5 5 N 2.60807 * 109.46987 * 239.99921 * 2 1 3 6 6 C 1.52998 * 109.47476 * 120.00136 * 2 1 3 7 7 C 1.53000 * 109.47126 * 54.73635 * 6 2 1 8 8 H 1.09002 * 109.47324 * 305.50879 * 7 6 2 9 9 O 1.42904 * 109.46966 * 65.50493 * 7 6 2 10 10 C 1.53002 * 109.47249 * 185.50367 * 7 6 2 11 11 N 1.46900 * 109.47265 * 179.97438 * 10 7 6 12 12 C 1.46840 * 111.00343 * 294.21598 * 11 10 7 13 13 C 1.53038 * 109.52720 * 174.15923 * 12 11 10 14 14 C 1.53123 * 109.27826 * 59.17428 * 13 12 11 15 15 C 1.53123 * 109.15227 * 302.34607 * 14 13 12 16 16 H 1.08997 * 109.50684 * 297.71787 * 15 14 13 17 17 C 1.50699 * 109.49200 * 177.60774 * 15 14 13 18 18 H 1.08002 * 119.99596 * 240.19755 * 17 15 14 19 19 C 1.37872 * 120.00331 * 60.19809 * 17 15 14 20 20 N 1.31508 * 119.99975 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 119.99877 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47191 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47141 * 120.00320 * 21 19 17 24 24 H 1.48499 * 109.47038 * 239.99994 * 21 19 17 25 25 C 1.46851 * 111.00161 * 170.00167 * 11 10 7 26 26 H 1.09001 * 109.46983 * 294.40543 * 1 2 3 27 27 H 1.08997 * 109.47251 * 54.40730 * 1 2 3 28 28 H 1.09004 * 109.47163 * 174.40720 * 1 2 3 29 29 H 1.09003 * 109.47117 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47093 * 300.00119 * 3 2 1 31 31 H 1.08991 * 109.47281 * 59.99996 * 3 2 1 32 32 H 1.08998 * 109.47043 * 294.74030 * 6 2 1 33 33 H 1.08994 * 109.47595 * 174.73802 * 6 2 1 34 34 H 0.96705 * 113.99674 * 60.00503 * 9 7 6 35 35 H 1.09002 * 109.46748 * 60.00390 * 10 7 6 36 36 H 1.09002 * 109.47376 * 300.00480 * 10 7 6 37 37 H 1.09008 * 109.45870 * 294.17268 * 12 11 10 38 38 H 1.08998 * 109.46506 * 54.15092 * 12 11 10 39 39 H 1.08997 * 109.50556 * 179.11768 * 13 12 11 40 40 H 1.09004 * 109.50250 * 299.24101 * 13 12 11 41 41 H 1.09005 * 109.51966 * 62.24929 * 14 13 12 42 42 H 1.08997 * 109.52592 * 182.37980 * 14 13 12 43 43 H 0.97004 * 119.99696 * 179.97438 * 20 19 17 44 44 H 1.09008 * 109.45691 * 305.86019 * 25 11 10 45 45 H 1.08998 * 109.46303 * 65.83568 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3993 -1.2295 -2.1295 6 6 2.0401 -0.7213 1.2492 7 6 1.4250 -2.1205 1.3171 8 1 0.3390 -2.0430 1.2644 9 8 1.9003 -2.9035 0.2203 10 6 1.8253 -2.7903 2.6332 11 7 1.2341 -4.1335 2.6987 12 6 -0.2308 -4.0610 2.7688 13 6 -0.8172 -5.4723 2.6889 14 6 -0.2730 -6.3123 3.8478 15 6 1.2566 -6.3316 3.7792 16 1 1.5733 -6.8041 2.8494 17 6 1.8026 -7.1075 4.9501 18 1 2.4596 -6.6248 5.6585 19 6 1.4636 -8.4335 5.1169 20 7 0.6641 -9.0213 4.2540 21 14 2.1400 -9.3949 6.5687 22 1 3.0099 -8.5111 7.3856 23 1 1.0148 -9.8902 7.4018 24 1 2.9333 -10.5479 6.0723 25 6 1.7827 -4.8955 3.8278 26 1 -0.3633 0.4246 0.9359 27 1 -0.3633 0.5981 -0.8356 28 1 -0.3634 -1.0228 -0.1002 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.7558 -0.1559 2.1367 33 1 3.1260 -0.8036 1.2033 34 1 2.8608 -3.0146 0.2035 35 1 1.4626 -2.1930 3.4698 36 1 2.9112 -2.8678 2.6859 37 1 -0.5268 -3.5975 3.7100 38 1 -0.6052 -3.4647 1.9368 39 1 -1.9038 -5.4193 2.7567 40 1 -0.5330 -5.9314 1.7420 41 1 -0.5897 -5.8750 4.7947 42 1 -0.6549 -7.3302 3.7707 43 1 0.4259 -9.9543 4.3712 44 1 2.8710 -4.9050 3.7649 45 1 1.4772 -4.4282 4.7640 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598624376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:13 Heat of formation + Delta-G solvation = -40.999690 kcal Electronic energy + Delta-G solvation = -22714.381992 eV Core-core repulsion = 19538.081475 eV Total energy + Delta-G solvation = -3176.300517 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.51895 -38.02287 -36.22963 -34.87143 -33.59721 -31.79414 -30.07090 -29.53205 -27.77958 -26.03392 -24.95384 -23.22377 -22.03477 -21.75110 -20.60475 -18.57710 -17.38183 -16.42278 -16.05567 -15.67668 -15.04315 -14.98333 -14.67573 -14.32229 -13.88035 -13.81134 -13.54180 -13.29832 -12.83556 -12.80776 -12.51926 -12.30628 -12.27702 -12.18064 -12.04478 -11.75141 -11.66619 -11.40155 -11.32884 -11.20007 -10.95926 -10.77052 -10.65664 -10.49810 -10.03565 -9.88294 -9.75980 -9.42101 -8.96429 -8.67092 -8.28188 -7.60099 -5.95365 -4.01696 2.81781 2.87327 3.30702 3.38789 3.41993 3.73716 4.08925 4.44244 4.46087 4.51782 4.67110 4.76208 4.97355 5.09181 5.22198 5.27322 5.34487 5.35677 5.44037 5.50658 5.51950 5.64536 5.68367 5.75934 5.80945 5.86716 5.90986 6.09225 6.13367 6.30841 6.41870 6.52700 6.75257 6.78334 6.99435 7.25711 7.42225 7.64295 7.68776 7.75214 7.78659 7.89454 8.11750 8.20600 8.50356 9.02789 9.62559 11.10600 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034775 B = 0.003449 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.992684 B = 8116.117814 C = 8215.632339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.041 3.959 3 C -0.142 4.142 4 C 0.219 3.781 5 N -0.431 5.431 6 C -0.144 4.144 7 C 0.102 3.898 8 H 0.104 0.896 9 O -0.540 6.540 10 C 0.023 3.977 11 N -0.527 5.527 12 C 0.064 3.936 13 C -0.117 4.117 14 C -0.110 4.110 15 C 0.055 3.945 16 H 0.034 0.966 17 C -0.515 4.515 18 H 0.053 0.947 19 C 0.062 3.938 20 N -0.887 5.887 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.069 3.931 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.368 0.632 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.020 0.980 38 H 0.058 0.942 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.028 0.972 42 H 0.090 0.910 43 H 0.259 0.741 44 H 0.057 0.943 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.509 20.752 -4.587 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.037 3.963 3 C -0.200 4.200 4 C -0.099 4.099 5 N -0.106 5.106 6 C -0.183 4.183 7 C 0.042 3.958 8 H 0.122 0.878 9 O -0.343 6.343 10 C -0.105 4.105 11 N -0.251 5.251 12 C -0.064 4.064 13 C -0.155 4.155 14 C -0.148 4.148 15 C 0.036 3.964 16 H 0.053 0.947 17 C -0.553 4.553 18 H 0.071 0.929 19 C -0.139 4.139 20 N -0.526 5.526 21 Si 0.718 3.282 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.058 4.058 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.215 0.785 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.047 0.953 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -0.529 19.476 -6.595 20.570 hybrid contribution 0.577 0.077 2.185 2.261 sum 0.048 19.554 -4.410 20.045 Atomic orbital electron populations 1.21992 0.91692 1.03704 1.03184 1.18163 0.96794 0.94139 0.87165 1.21902 1.01852 0.92966 1.03295 1.28765 0.93767 0.93236 0.94106 1.81165 1.08615 1.08743 1.12077 1.22490 1.01746 0.97567 0.96489 1.22120 0.99599 0.87433 0.86599 0.87833 1.86653 1.26781 1.73693 1.47202 1.22763 1.00128 0.91358 0.96299 1.61899 1.05306 1.12580 1.45349 1.22047 0.87919 0.98285 0.98174 1.21663 0.97610 0.94744 1.01481 1.21645 0.98917 1.00574 0.93651 1.18656 0.91716 0.88526 0.97496 0.94737 1.21185 1.28765 0.95449 1.09939 0.92875 1.24938 0.95121 0.97624 0.96196 1.69908 1.35296 1.11732 1.35667 0.86583 0.78802 0.80062 0.82797 1.19892 1.21112 1.21056 1.22312 0.98187 0.96717 0.88596 0.90561 0.91760 0.90946 0.91777 0.91739 0.90521 0.89019 0.90610 0.78505 0.94842 0.91017 0.96196 0.92364 0.93671 0.92003 0.95290 0.89203 0.93126 0.92486 0.96501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 7.75 37.16 0.29 -0.70 16 2 C 0.04 0.30 0.74 -157.29 -0.12 0.19 16 3 C -0.14 -0.72 8.43 37.16 0.31 -0.41 16 4 C 0.22 2.47 11.60 -20.76 -0.24 2.23 16 5 N -0.43 -6.21 18.49 42.15 0.78 -5.43 16 6 C -0.14 -1.06 4.06 -26.73 -0.11 -1.17 16 7 C 0.10 1.12 2.50 -26.73 -0.07 1.06 16 8 H 0.10 1.16 4.44 -51.93 -0.23 0.93 16 9 O -0.54 -7.45 10.97 -35.23 -0.39 -7.83 16 10 C 0.02 0.31 4.62 -3.82 -0.02 0.29 16 11 N -0.53 -9.42 4.52 -234.67 -1.06 -10.48 16 12 C 0.06 1.10 5.29 -3.84 -0.02 1.08 16 13 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 14 C -0.11 -2.62 5.02 -26.60 -0.13 -2.75 16 15 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 16 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 17 C -0.51 -14.15 8.56 -34.44 -0.29 -14.45 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -25.55 11.37 55.43 0.63 -24.92 16 21 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.07 1.44 4.68 -3.84 -0.02 1.42 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.62 6.56 -51.93 -0.34 0.28 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.37 4.51 9.05 45.56 0.41 4.92 16 35 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 36 H 0.07 0.92 7.99 -51.93 -0.41 0.50 16 37 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 38 H 0.06 0.89 6.21 -51.93 -0.32 0.57 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.06 1.18 8.02 -51.92 -0.42 0.77 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 351.56 15.07 5.30 5.30 Total: -1.00 -31.56 351.56 -7.73 -39.30 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.09 Total: 0.68 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.88 Total: -12.89 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.35 Total: -40.84 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -0.39 Total: -7.83 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.56 -7.73 -39.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598624376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.705 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds