Wall clock time and date at job start Fri Apr 10 2020 17:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47193 * 2 1 4 4 C 1.47206 * 109.46974 * 240.00020 * 2 1 3 5 5 N 2.60807 * 109.46987 * 239.99921 * 2 1 3 6 6 C 1.52998 * 109.47476 * 120.00136 * 2 1 3 7 7 C 1.53000 * 109.47126 * 54.73635 * 6 2 1 8 8 H 1.09002 * 109.47324 * 305.50879 * 7 6 2 9 9 O 1.42904 * 109.46966 * 65.50493 * 7 6 2 10 10 C 1.53002 * 109.47249 * 185.50367 * 7 6 2 11 11 N 1.46900 * 109.47265 * 179.97438 * 10 7 6 12 12 C 1.46840 * 111.00343 * 294.21598 * 11 10 7 13 13 C 1.53038 * 109.52720 * 174.15923 * 12 11 10 14 14 C 1.53123 * 109.27826 * 59.17428 * 13 12 11 15 15 C 1.53123 * 109.15227 * 302.34607 * 14 13 12 16 16 H 1.08997 * 109.50684 * 297.71787 * 15 14 13 17 17 C 1.50699 * 109.49200 * 177.60774 * 15 14 13 18 18 H 1.08002 * 119.99596 * 240.19755 * 17 15 14 19 19 C 1.37872 * 120.00331 * 60.19809 * 17 15 14 20 20 N 1.31508 * 119.99975 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 119.99877 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47191 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47141 * 120.00320 * 21 19 17 24 24 H 1.48499 * 109.47038 * 239.99994 * 21 19 17 25 25 C 1.46851 * 111.00161 * 170.00167 * 11 10 7 26 26 H 1.09001 * 109.46983 * 294.40543 * 1 2 3 27 27 H 1.08997 * 109.47251 * 54.40730 * 1 2 3 28 28 H 1.09004 * 109.47163 * 174.40720 * 1 2 3 29 29 H 1.09003 * 109.47117 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47093 * 300.00119 * 3 2 1 31 31 H 1.08991 * 109.47281 * 59.99996 * 3 2 1 32 32 H 1.08998 * 109.47043 * 294.74030 * 6 2 1 33 33 H 1.08994 * 109.47595 * 174.73802 * 6 2 1 34 34 H 0.96705 * 113.99674 * 60.00503 * 9 7 6 35 35 H 1.09002 * 109.46748 * 60.00390 * 10 7 6 36 36 H 1.09002 * 109.47376 * 300.00480 * 10 7 6 37 37 H 1.09008 * 109.45870 * 294.17268 * 12 11 10 38 38 H 1.08998 * 109.46506 * 54.15092 * 12 11 10 39 39 H 1.08997 * 109.50556 * 179.11768 * 13 12 11 40 40 H 1.09004 * 109.50250 * 299.24101 * 13 12 11 41 41 H 1.09005 * 109.51966 * 62.24929 * 14 13 12 42 42 H 1.08997 * 109.52592 * 182.37980 * 14 13 12 43 43 H 0.97004 * 119.99696 * 179.97438 * 20 19 17 44 44 H 1.09008 * 109.45691 * 305.86019 * 25 11 10 45 45 H 1.08998 * 109.46303 * 65.83568 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3993 -1.2295 -2.1295 6 6 2.0401 -0.7213 1.2492 7 6 1.4250 -2.1205 1.3171 8 1 0.3390 -2.0430 1.2644 9 8 1.9003 -2.9035 0.2203 10 6 1.8253 -2.7903 2.6332 11 7 1.2341 -4.1335 2.6987 12 6 -0.2308 -4.0610 2.7688 13 6 -0.8172 -5.4723 2.6889 14 6 -0.2730 -6.3123 3.8478 15 6 1.2566 -6.3316 3.7792 16 1 1.5733 -6.8041 2.8494 17 6 1.8026 -7.1075 4.9501 18 1 2.4596 -6.6248 5.6585 19 6 1.4636 -8.4335 5.1169 20 7 0.6641 -9.0213 4.2540 21 14 2.1400 -9.3949 6.5687 22 1 3.0099 -8.5111 7.3856 23 1 1.0148 -9.8902 7.4018 24 1 2.9333 -10.5479 6.0723 25 6 1.7827 -4.8955 3.8278 26 1 -0.3633 0.4246 0.9359 27 1 -0.3633 0.5981 -0.8356 28 1 -0.3634 -1.0228 -0.1002 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.7558 -0.1559 2.1367 33 1 3.1260 -0.8036 1.2033 34 1 2.8608 -3.0146 0.2035 35 1 1.4626 -2.1930 3.4698 36 1 2.9112 -2.8678 2.6859 37 1 -0.5268 -3.5975 3.7100 38 1 -0.6052 -3.4647 1.9368 39 1 -1.9038 -5.4193 2.7567 40 1 -0.5330 -5.9314 1.7420 41 1 -0.5897 -5.8750 4.7947 42 1 -0.6549 -7.3302 3.7707 43 1 0.4259 -9.9543 4.3712 44 1 2.8710 -4.9050 3.7649 45 1 1.4772 -4.4282 4.7640 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598624376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:12 Heat of formation + Delta-G solvation = -62.854880 kcal Electronic energy + Delta-G solvation = -22715.329704 eV Core-core repulsion = 19538.081475 eV Total energy + Delta-G solvation = -3177.248229 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47312 -39.31283 -37.30210 -35.70113 -35.36928 -33.47006 -31.72175 -30.65717 -28.22161 -27.09789 -26.85719 -24.29647 -23.38644 -22.99997 -21.84715 -20.33250 -18.53986 -17.98539 -17.09221 -16.74108 -16.43774 -16.25417 -15.87232 -15.37940 -15.06193 -14.91325 -14.82639 -14.43899 -14.35206 -13.96495 -13.94064 -13.54992 -13.31556 -13.07039 -12.86940 -12.78738 -12.68989 -12.63174 -12.48119 -12.44670 -12.32601 -12.04581 -11.90687 -11.81258 -11.71412 -11.48750 -11.27834 -10.95287 -10.64725 -10.52992 -10.34920 -8.98525 -8.07655 -6.22382 1.40053 1.41522 1.53002 1.97995 2.04843 2.42616 3.00935 3.09038 3.19268 3.65762 3.75233 3.95404 4.09215 4.13389 4.22630 4.30405 4.38179 4.48797 4.51750 4.62549 4.68973 4.75717 4.82677 4.88725 4.91774 4.99933 5.00389 5.01781 5.04315 5.13821 5.15616 5.20417 5.24533 5.39008 5.42034 5.49126 5.53773 5.63920 5.98499 6.14795 6.23838 6.44021 6.48274 6.81722 6.90548 6.91952 7.45884 8.97146 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034775 B = 0.003449 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.992684 B = 8116.117814 C = 8215.632339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.042 3.958 3 C -0.139 4.139 4 C 0.240 3.760 5 N -0.498 5.498 6 C -0.134 4.134 7 C 0.104 3.896 8 H 0.105 0.895 9 O -0.565 6.565 10 C 0.023 3.977 11 N -0.544 5.544 12 C 0.069 3.931 13 C -0.112 4.112 14 C -0.102 4.102 15 C 0.051 3.949 16 H -0.011 1.011 17 C -0.535 4.535 18 H 0.053 0.947 19 C 0.011 3.989 20 N -0.917 5.917 21 Si 0.956 3.044 22 H -0.265 1.265 23 H -0.280 1.280 24 H -0.283 1.283 25 C 0.084 3.916 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.125 0.875 33 H 0.080 0.920 34 H 0.371 0.629 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.032 0.968 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.040 0.960 41 H 0.025 0.975 42 H 0.053 0.947 43 H 0.259 0.741 44 H 0.053 0.947 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.667 23.669 -3.158 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.039 3.961 3 C -0.197 4.197 4 C -0.077 4.077 5 N -0.174 5.174 6 C -0.173 4.173 7 C 0.045 3.955 8 H 0.123 0.877 9 O -0.370 6.370 10 C -0.105 4.105 11 N -0.269 5.269 12 C -0.058 4.058 13 C -0.150 4.150 14 C -0.141 4.141 15 C 0.033 3.967 16 H 0.007 0.993 17 C -0.573 4.573 18 H 0.071 0.929 19 C -0.188 4.188 20 N -0.557 5.557 21 Si 0.781 3.219 22 H -0.189 1.189 23 H -0.206 1.206 24 H -0.209 1.209 25 C -0.043 4.043 26 H 0.123 0.877 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.143 0.857 33 H 0.099 0.901 34 H 0.218 0.782 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -0.682 22.420 -5.169 23.019 hybrid contribution 0.607 -0.833 1.720 2.005 sum -0.074 21.588 -3.449 21.862 Atomic orbital electron populations 1.22035 0.90879 1.02709 1.05000 1.18475 0.97328 0.95123 0.85202 1.21925 1.01903 0.91104 1.04733 1.29675 0.92082 0.91877 0.94084 1.81176 1.10898 1.10975 1.14332 1.22438 1.01843 0.95338 0.97679 1.22221 0.99891 0.88880 0.84494 0.87719 1.86636 1.27214 1.74679 1.48448 1.22893 1.00167 0.89065 0.98335 1.61794 1.05850 1.15489 1.43752 1.22006 0.87489 0.96458 0.99880 1.21581 0.99104 0.95887 0.98425 1.21442 0.98088 0.99340 0.95182 1.18582 0.92716 0.90938 0.94496 0.99261 1.21574 1.28868 0.96223 1.10648 0.92859 1.25765 0.95402 0.98726 0.98867 1.70066 1.36329 1.11932 1.37359 0.85543 0.78254 0.78525 0.79537 1.18895 1.20573 1.20859 1.21938 0.97862 0.94608 0.89940 0.87713 0.91302 0.93084 0.91791 0.91686 0.87759 0.85690 0.90099 0.78157 0.92741 0.90693 0.95028 0.89639 0.91379 0.94104 0.95584 0.92833 0.93166 0.92802 0.96384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 7.75 71.98 0.56 -0.94 16 2 C 0.04 0.49 0.74 -53.99 -0.04 0.45 16 3 C -0.14 -0.88 8.43 71.98 0.61 -0.27 16 4 C 0.24 5.14 11.60 89.44 1.04 6.18 16 5 N -0.50 -14.49 18.49 20.01 0.37 -14.12 16 6 C -0.13 -1.46 4.06 30.59 0.12 -1.34 16 7 C 0.10 2.01 2.50 30.60 0.08 2.08 16 8 H 0.11 2.01 4.44 -2.39 -0.01 2.00 16 9 O -0.56 -15.14 10.97 -148.98 -1.63 -16.77 16 10 C 0.02 0.55 4.62 86.30 0.40 0.95 16 11 N -0.54 -18.78 4.52 -896.36 -4.05 -22.84 16 12 C 0.07 2.25 5.29 86.33 0.46 2.71 16 13 C -0.11 -4.44 6.09 30.65 0.19 -4.26 16 14 C -0.10 -5.01 5.02 30.68 0.15 -4.85 16 15 C 0.05 2.68 2.26 -11.49 -0.03 2.65 16 16 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 17 C -0.53 -30.05 8.56 25.60 0.22 -29.83 16 18 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 19 C 0.01 0.62 5.30 84.65 0.45 1.06 16 20 N -0.92 -54.61 11.37 21.44 0.24 -54.37 16 21 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 22 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 C 0.08 3.51 4.68 86.32 0.40 3.92 16 26 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.76 6.56 -2.38 -0.02 0.74 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.10 0.14 8.14 -2.39 -0.02 0.13 16 32 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.37 9.03 9.05 -74.05 -0.67 8.36 16 35 H 0.05 1.11 8.12 -2.39 -0.02 1.09 16 36 H 0.07 1.74 7.99 -2.39 -0.02 1.72 16 37 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.09 2.35 6.21 -2.39 -0.01 2.34 16 39 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 42 H 0.05 2.99 6.17 -2.39 -0.01 2.98 16 43 H 0.26 14.65 8.31 -92.71 -0.77 13.87 16 44 H 0.05 2.24 8.02 -2.38 -0.02 2.22 16 45 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -72.35 351.56 1.85 -70.50 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.29 Total: 12.83 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 4.61 Total: -21.48 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -3.44 Total: -91.33 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -1.63 Total: -16.77 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -72.35 1.85 -70.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598624376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.645 kcal (2) G-P(sol) polarization free energy of solvation -72.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds