Wall clock time and date at job start Fri Apr 10 2020 17:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47256 * 2 1 4 4 C 1.47194 * 109.46737 * 239.99758 * 2 1 3 5 5 N 2.60797 * 109.46879 * 240.00047 * 2 1 3 6 6 C 1.53000 * 109.46924 * 120.00210 * 2 1 3 7 7 C 1.52995 * 109.47518 * 54.65473 * 6 2 1 8 8 H 1.08997 * 109.47465 * 305.12696 * 7 6 2 9 9 O 1.42905 * 109.46733 * 65.12206 * 7 6 2 10 10 C 1.53000 * 109.47334 * 185.11768 * 7 6 2 11 11 N 1.46902 * 109.47151 * 180.39524 * 10 7 6 12 12 C 1.46844 * 111.00000 * 184.25103 * 11 10 7 13 13 C 1.53036 * 109.52341 * 185.84146 * 12 11 10 14 14 C 1.53116 * 109.27876 * 300.82144 * 13 12 11 15 15 C 1.53115 * 109.16028 * 57.65653 * 14 13 12 16 16 H 1.09007 * 109.50589 * 62.32372 * 15 14 13 17 17 C 1.50702 * 109.50393 * 182.40367 * 15 14 13 18 18 H 1.08001 * 119.99834 * 120.00207 * 17 15 14 19 19 C 1.37871 * 120.00051 * 299.99686 * 17 15 14 20 20 N 1.31514 * 120.00148 * 0.02562 * 19 17 15 21 21 Si 1.86805 * 119.99892 * 179.72411 * 19 17 15 22 22 H 1.48505 * 109.46911 * 90.00432 * 21 19 17 23 23 H 1.48496 * 109.47011 * 209.99904 * 21 19 17 24 24 H 1.48495 * 109.47275 * 330.00273 * 21 19 17 25 25 C 1.46849 * 111.00180 * 308.46663 * 11 10 7 26 26 H 1.09002 * 109.46947 * 302.33786 * 1 2 3 27 27 H 1.08996 * 109.47141 * 62.33370 * 1 2 3 28 28 H 1.08994 * 109.47100 * 182.34088 * 1 2 3 29 29 H 1.08996 * 109.47072 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47036 * 300.00472 * 3 2 1 31 31 H 1.09002 * 109.47276 * 60.00195 * 3 2 1 32 32 H 1.09009 * 109.47000 * 294.65863 * 6 2 1 33 33 H 1.08997 * 109.46797 * 174.65975 * 6 2 1 34 34 H 0.96703 * 114.00038 * 60.00617 * 9 7 6 35 35 H 1.09003 * 109.46975 * 60.40149 * 10 7 6 36 36 H 1.08993 * 109.47271 * 300.40007 * 10 7 6 37 37 H 1.09000 * 109.46064 * 65.82389 * 12 11 10 38 38 H 1.09002 * 109.45552 * 305.85559 * 12 11 10 39 39 H 1.09005 * 109.50324 * 180.88675 * 13 12 11 40 40 H 1.08994 * 109.50361 * 60.76586 * 13 12 11 41 41 H 1.08998 * 109.52393 * 297.75164 * 14 13 12 42 42 H 1.09007 * 109.57407 * 177.58962 * 14 13 12 43 43 H 0.96995 * 120.00300 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.46132 * 54.14050 * 25 11 10 45 45 H 1.09000 * 109.46076 * 294.17597 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0206 -0.6939 -1.2018 5 7 2.3993 -1.2294 -2.1294 6 6 2.0400 -0.7213 1.2492 7 6 1.4233 -2.1197 1.3182 8 1 0.3372 -2.0405 1.2730 9 8 1.8902 -2.9010 0.2165 10 6 1.8315 -2.7930 2.6301 11 7 1.2471 -4.1394 2.6921 12 6 1.5341 -4.7788 3.9824 13 6 1.0387 -6.2265 3.9573 14 6 -0.4677 -6.2407 3.6834 15 6 -0.7441 -5.5263 2.3576 16 1 -0.2547 -6.0640 1.5455 17 6 -2.2300 -5.4839 2.1093 18 1 -2.7337 -4.5338 2.0089 19 6 -2.9462 -6.6578 2.0102 20 7 -2.3328 -7.8147 2.1328 21 14 -4.7892 -6.6050 1.7100 22 1 -5.0530 -6.6113 0.2486 23 1 -5.4264 -7.7927 2.3332 24 1 -5.3531 -5.3690 2.3095 25 6 -0.1971 -4.0988 2.4291 26 1 -0.3633 0.5497 0.8683 27 1 -0.3633 0.4771 -0.9101 28 1 -0.3633 -1.0268 0.0420 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.7568 -0.1552 2.1367 33 1 3.1258 -0.8049 1.2027 34 1 2.8503 -3.0135 0.1930 35 1 1.4693 -2.2008 3.4705 36 1 2.9179 -2.8659 2.6784 37 1 1.0257 -4.2347 4.7784 38 1 2.6090 -4.7658 4.1629 39 1 1.2378 -6.6961 4.9206 40 1 1.5568 -6.7748 3.1705 41 1 -0.9894 -5.7260 4.4902 42 1 -0.8180 -7.2711 3.6220 43 1 -2.8367 -8.6405 2.0635 44 1 -0.3796 -3.5920 1.4815 45 1 -0.6975 -3.5579 3.2323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598624379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:18 Heat of formation + Delta-G solvation = -37.529917 kcal Electronic energy + Delta-G solvation = -23020.507267 eV Core-core repulsion = 19844.357211 eV Total energy + Delta-G solvation = -3176.150056 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.51010 -37.98952 -36.14835 -34.78346 -33.57068 -31.84750 -29.84985 -29.60318 -27.67116 -25.95218 -24.95309 -23.36143 -22.21048 -21.25757 -20.66080 -18.57686 -17.32825 -16.37762 -15.98723 -15.61415 -15.11522 -14.88044 -14.46879 -14.37603 -13.94281 -13.79895 -13.46236 -13.00520 -12.91106 -12.68351 -12.43712 -12.37604 -12.18386 -12.10331 -12.00129 -11.70133 -11.60426 -11.40797 -11.28845 -11.15038 -10.92416 -10.74516 -10.62390 -10.37191 -10.05838 -9.82030 -9.63165 -9.39847 -8.96477 -8.62942 -8.25290 -7.60009 -5.92450 -3.98353 2.90887 2.96200 3.33969 3.40497 3.42634 3.82878 4.13981 4.46447 4.54094 4.59280 4.73932 4.82946 5.05505 5.14939 5.28830 5.36247 5.37653 5.42828 5.51834 5.56811 5.62400 5.70445 5.72963 5.74067 5.84179 5.85999 6.02219 6.08813 6.24352 6.30693 6.42470 6.56713 6.73791 6.79594 7.03098 7.26384 7.44040 7.69050 7.73431 7.78144 7.82996 7.92549 8.16082 8.23418 8.53394 9.05704 9.65582 11.13642 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017412 B = 0.004758 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.689265 B = 5883.664296 C = 6815.758219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.041 3.959 3 C -0.141 4.141 4 C 0.220 3.780 5 N -0.431 5.431 6 C -0.142 4.142 7 C 0.096 3.904 8 H 0.113 0.887 9 O -0.536 6.536 10 C 0.025 3.975 11 N -0.528 5.528 12 C 0.064 3.936 13 C -0.117 4.117 14 C -0.111 4.111 15 C 0.056 3.944 16 H 0.034 0.966 17 C -0.512 4.512 18 H 0.052 0.948 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.065 3.935 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.366 0.634 35 H 0.033 0.967 36 H 0.067 0.933 37 H 0.021 0.979 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.060 0.940 41 H 0.028 0.972 42 H 0.090 0.910 43 H 0.259 0.741 44 H 0.066 0.934 45 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.373 16.752 2.356 19.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.038 3.962 3 C -0.199 4.199 4 C -0.098 4.098 5 N -0.106 5.106 6 C -0.181 4.181 7 C 0.036 3.964 8 H 0.130 0.870 9 O -0.339 6.339 10 C -0.103 4.103 11 N -0.253 5.253 12 C -0.064 4.064 13 C -0.155 4.155 14 C -0.149 4.149 15 C 0.037 3.963 16 H 0.053 0.947 17 C -0.551 4.551 18 H 0.070 0.930 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.061 4.061 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.212 0.788 35 H 0.051 0.949 36 H 0.085 0.915 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 9.484 15.425 0.452 18.113 hybrid contribution -0.930 0.675 1.130 1.612 sum 8.554 16.101 1.581 18.300 Atomic orbital electron populations 1.22032 0.91494 1.04221 1.03128 1.18155 0.96952 0.94034 0.87107 1.21894 1.01687 0.93038 1.03312 1.28755 0.93723 0.93225 0.94115 1.81157 1.08785 1.08690 1.12009 1.22468 1.01472 0.97580 0.96625 1.22251 1.00369 0.87504 0.86247 0.86987 1.86724 1.26542 1.73721 1.46918 1.22746 0.99712 0.91207 0.96684 1.61969 1.15464 1.16590 1.31249 1.22022 0.98606 0.96481 0.89309 1.21665 0.99876 0.94133 0.99807 1.21657 0.90721 1.04308 0.98207 1.18638 0.94561 0.88989 0.94118 0.94744 1.21137 0.92914 0.92274 1.48805 0.92960 1.24924 0.98061 0.95567 0.95261 1.69889 1.35431 0.97142 1.50276 0.86656 0.85918 0.77416 0.78346 1.20721 1.21314 1.20044 1.22379 0.83877 1.01308 0.98568 0.90563 0.91772 0.90515 0.91878 0.91725 0.90555 0.89068 0.90765 0.78822 0.94934 0.91451 0.96072 0.92685 0.93641 0.92099 0.95296 0.89148 0.93119 0.91561 0.96761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.02 37.16 0.30 -1.02 16 2 C 0.04 0.35 0.74 -157.30 -0.12 0.24 16 3 C -0.14 -0.84 8.43 37.16 0.31 -0.53 16 4 C 0.22 2.73 11.59 -20.76 -0.24 2.49 16 5 N -0.43 -6.69 18.49 42.15 0.78 -5.91 16 6 C -0.14 -1.17 4.06 -26.73 -0.11 -1.28 16 7 C 0.10 1.18 2.04 -26.73 -0.05 1.12 16 8 H 0.11 1.55 4.07 -51.93 -0.21 1.34 16 9 O -0.54 -8.05 10.94 -35.23 -0.39 -8.44 16 10 C 0.03 0.34 4.80 -3.82 -0.02 0.32 16 11 N -0.53 -9.47 4.62 -234.67 -1.09 -10.56 16 12 C 0.06 1.10 5.46 -3.84 -0.02 1.08 16 13 C -0.12 -2.31 6.09 -26.65 -0.16 -2.47 16 14 C -0.11 -2.65 5.02 -26.61 -0.13 -2.78 16 15 C 0.06 1.41 2.26 -91.69 -0.21 1.21 16 16 H 0.03 0.99 8.14 -51.93 -0.42 0.57 16 17 C -0.51 -14.17 8.56 -34.44 -0.29 -14.46 16 18 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -25.73 11.35 55.43 0.63 -25.10 16 21 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.07 1.37 4.25 -3.83 -0.02 1.35 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.86 6.09 -51.93 -0.32 0.54 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.37 4.65 9.05 45.56 0.41 5.06 16 35 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 2.42 6.15 -51.93 -0.32 2.11 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.07 1.40 5.85 -51.93 -0.30 1.10 16 45 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 350.38 15.07 5.28 5.28 Total: -1.00 -31.77 350.38 -7.70 -39.48 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.04 Total: 1.86 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -0.86 Total: -13.05 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.32 Total: -41.57 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.39 Total: -8.44 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.77 -7.70 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598624379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.948 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds