Wall clock time and date at job start Fri Apr 10 2020 17:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46920 * 2 1 4 4 C 1.53008 * 109.47001 * 240.00475 * 2 1 3 5 5 C 1.50700 * 109.46907 * 59.99829 * 4 2 1 6 6 H 1.07994 * 120.00190 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99759 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00230 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 120.00042 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.46934 * 90.00122 * 9 7 5 11 11 H 1.48492 * 109.47200 * 210.00339 * 9 7 5 12 12 H 1.48499 * 109.46941 * 330.00393 * 9 7 5 13 13 C 1.53000 * 109.47239 * 120.00443 * 2 1 3 14 14 N 1.46501 * 109.47090 * 299.99873 * 13 2 1 15 15 C 1.34774 * 120.00122 * 180.02562 * 14 13 2 16 16 O 1.21595 * 119.99881 * 355.93654 * 15 14 13 17 17 N 1.34772 * 120.00148 * 175.93558 * 15 14 13 18 18 C 1.46501 * 120.00097 * 186.22495 * 17 15 14 19 19 C 1.53004 * 117.49768 * 51.41904 * 18 17 15 20 20 C 1.52999 * 60.00139 * 252.51374 * 19 18 17 21 21 C 1.46498 * 120.00132 * 6.23076 * 17 15 14 22 22 C 1.53005 * 117.49591 * 28.85910 * 21 17 15 23 23 C 1.53001 * 117.49492 * 320.23971 * 21 17 15 24 24 H 1.09003 * 109.46954 * 299.99210 * 1 2 3 25 25 H 1.09001 * 109.47280 * 59.99785 * 1 2 3 26 26 H 1.09004 * 109.46985 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47315 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47558 * 300.00494 * 3 2 1 29 29 H 1.09003 * 109.47181 * 60.00695 * 3 2 1 30 30 H 1.08994 * 109.46778 * 179.97438 * 4 2 1 31 31 H 1.09004 * 109.46969 * 299.99665 * 4 2 1 32 32 H 0.96998 * 120.00382 * 179.97438 * 8 7 5 33 33 H 1.09008 * 109.46712 * 180.02562 * 13 2 1 34 34 H 1.08994 * 109.47381 * 60.00111 * 13 2 1 35 35 H 0.96998 * 119.99978 * 359.97438 * 14 13 2 36 36 H 1.08996 * 115.56396 * 197.11145 * 18 17 15 37 37 H 1.08999 * 117.49561 * 145.01995 * 19 18 17 38 38 H 1.09006 * 117.49636 * 0.02562 * 19 18 17 39 39 H 1.08996 * 117.49651 * 107.49516 * 20 19 18 40 40 H 1.08994 * 117.49446 * 252.48841 * 20 19 18 41 41 H 1.08995 * 115.55094 * 174.57306 * 21 17 15 42 42 H 1.08993 * 117.49834 * 0.02562 * 22 21 17 43 43 H 1.09004 * 117.49523 * 145.02935 * 22 21 17 44 44 H 1.09004 * 117.49829 * 214.98114 * 23 21 17 45 45 H 1.09001 * 117.50249 * 0.02562 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5376 -0.0107 -2.4797 6 1 0.9163 0.8671 -2.3806 7 6 1.8702 -0.4819 -3.7321 8 7 1.4314 0.1378 -4.8058 9 14 2.9442 -2.0007 -3.9036 10 1 2.0856 -3.2115 -3.9485 11 1 3.7356 -1.9084 -5.1566 12 1 3.8649 -2.0896 -2.7419 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0308 2.4454 15 6 1.8777 -0.4910 3.6695 16 8 2.5149 -1.5205 3.7821 17 7 1.4976 0.1898 4.7687 18 6 1.9658 -0.2333 6.0908 19 6 3.4705 -0.4409 6.2742 20 6 2.5327 -1.6485 6.2199 21 6 0.6160 1.3530 4.6415 22 6 -0.3579 1.3756 3.4617 23 6 0.8614 2.2999 3.4650 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 3.1299 -0.7208 -1.2496 31 1 1.6766 -1.7489 -1.2494 32 1 1.6657 -0.1935 -5.6869 33 1 3.1301 -0.7209 1.2493 34 1 1.6767 -1.7490 1.2491 35 1 0.9943 0.7581 2.3565 36 1 1.4057 0.1637 6.9374 37 1 3.9003 -0.1805 7.2415 38 1 4.1121 -0.2623 5.4113 39 1 2.5573 -2.2648 5.3212 40 1 2.3458 -2.1828 7.1513 41 1 0.2802 1.7932 5.5803 42 1 -0.3430 0.5249 2.7804 43 1 -1.3349 1.8307 3.6242 44 1 0.6865 3.3631 3.6298 45 1 1.6783 2.0573 2.7855 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602317669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:28 Heat of formation + Delta-G solvation = 71.661050 kcal Electronic energy + Delta-G solvation = -23338.643623 eV Core-core repulsion = 20167.228443 eV Total energy + Delta-G solvation = -3171.415180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.28351 -38.06530 -37.41572 -36.22540 -33.20705 -32.19496 -31.81697 -27.81852 -26.62763 -26.50219 -23.43605 -22.76854 -22.61910 -22.25465 -21.93049 -20.52629 -18.11028 -17.39082 -16.83423 -16.44183 -15.66157 -15.28028 -15.02349 -14.74640 -14.25824 -14.03056 -13.86998 -13.47648 -13.15545 -12.84025 -12.79618 -12.28544 -12.05763 -11.97790 -11.78044 -11.51032 -11.18392 -11.10080 -11.00301 -10.89628 -10.68245 -10.60087 -10.45832 -10.36111 -9.96211 -9.75350 -9.61044 -9.37260 -8.99398 -8.82325 -8.53218 -8.21364 -6.04055 -4.01323 2.49869 3.03316 3.32178 3.40156 3.44566 3.52966 3.83875 4.01523 4.42125 4.46154 4.54811 4.60080 4.79824 4.91887 5.06115 5.10387 5.28437 5.34043 5.40136 5.53769 5.55706 5.58525 5.69303 5.70583 5.72393 6.00818 6.13376 6.13944 6.16068 6.31074 6.32515 6.48250 6.58274 6.64601 6.84736 6.89526 6.97152 7.00397 7.04299 7.20632 7.36984 7.77943 8.00131 8.52835 8.69340 8.99831 9.58734 11.08631 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026281 B = 0.004398 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.162246 B = 6364.771046 C = 7084.357009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.062 4.062 3 C -0.132 4.132 4 C -0.001 4.001 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.134 3.866 14 N -0.753 5.753 15 C 0.703 3.297 16 O -0.581 6.581 17 N -0.579 5.579 18 C 0.089 3.911 19 C -0.191 4.191 20 C -0.197 4.197 21 C 0.087 3.913 22 C -0.223 4.223 23 C -0.217 4.217 24 H 0.030 0.970 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.019 0.981 31 H 0.014 0.986 32 H 0.262 0.738 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.412 0.588 36 H 0.127 0.873 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.152 0.848 40 H 0.084 0.916 41 H 0.138 0.862 42 H 0.123 0.877 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.020 3.644 21.573 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.063 4.063 3 C -0.189 4.189 4 C -0.039 4.039 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.010 3.990 14 N -0.421 5.421 15 C 0.405 3.595 16 O -0.460 6.460 17 N -0.312 5.312 18 C -0.016 4.016 19 C -0.230 4.230 20 C -0.235 4.235 21 C -0.019 4.019 22 C -0.262 4.262 23 C -0.256 4.256 24 H 0.049 0.951 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.262 0.738 36 H 0.145 0.855 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.169 0.831 40 H 0.103 0.897 41 H 0.155 0.845 42 H 0.140 0.860 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.558 2.915 21.422 21.676 hybrid contribution 0.310 -0.342 -0.288 0.544 sum -1.249 2.573 21.134 21.327 Atomic orbital electron populations 1.21856 0.94937 1.01360 1.00789 1.20686 0.95753 0.95867 0.93957 1.21850 1.00542 0.95722 1.00789 1.19584 0.96321 0.95513 0.92484 1.21077 1.31840 1.13359 0.88608 0.90382 1.24989 0.95682 0.96730 0.95969 1.69898 1.45933 1.40589 0.97877 0.86864 0.81359 0.83944 0.77653 1.20358 1.21510 1.18980 1.21563 0.98719 0.96064 0.82639 1.47159 1.56271 1.34255 1.04449 1.16098 0.79821 0.83038 0.80493 1.90645 1.46206 1.24399 1.84781 1.46019 1.50663 1.29505 1.05009 1.21399 0.95146 1.01073 0.84002 1.23278 0.93096 1.03930 1.02711 1.24223 1.01673 0.91939 1.05622 1.21687 0.95553 0.89364 0.95269 1.24092 0.96025 1.03442 1.02635 1.23980 1.00435 0.98438 1.02742 0.95113 0.90705 0.93265 0.93310 0.90703 0.95112 0.96312 0.96735 0.92799 0.92095 0.91912 0.73799 0.85526 0.88838 0.88792 0.83109 0.89716 0.84464 0.85969 0.86946 0.87024 0.86588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.05 37.16 0.30 -2.03 16 2 C -0.06 -1.16 0.54 -154.51 -0.08 -1.24 16 3 C -0.13 -2.32 8.05 37.16 0.30 -2.02 16 4 C 0.00 -0.03 3.11 -27.88 -0.09 -0.11 16 5 C -0.51 -13.66 8.20 -34.44 -0.28 -13.94 16 6 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 7 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 9 Si 0.87 21.55 27.47 -169.99 -4.67 16.88 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.13 2.35 4.57 -4.04 -0.02 2.33 16 14 N -0.75 -11.48 3.08 -65.22 -0.20 -11.68 16 15 C 0.70 11.19 7.70 -86.92 -0.67 10.52 16 16 O -0.58 -10.81 12.29 5.28 0.06 -10.74 16 17 N -0.58 -7.27 3.23 -164.23 -0.53 -7.80 16 18 C 0.09 0.97 6.65 -67.93 -0.45 0.52 16 19 C -0.19 -2.17 9.91 -26.73 -0.26 -2.43 16 20 C -0.20 -2.40 9.64 -26.73 -0.26 -2.65 16 21 C 0.09 0.83 6.67 -67.93 -0.45 0.38 16 22 C -0.22 -2.16 9.25 -26.73 -0.25 -2.41 16 23 C -0.22 -2.09 9.36 -26.73 -0.25 -2.34 16 24 H 0.03 0.45 5.38 -51.93 -0.28 0.17 16 25 H 0.07 1.46 6.62 -51.93 -0.34 1.11 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 28 H 0.07 1.46 6.62 -51.93 -0.34 1.11 16 29 H 0.03 0.45 5.33 -51.93 -0.28 0.17 16 30 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 31 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 33 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.41 5.52 0.56 -40.82 -0.02 5.50 16 36 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.29 7.89 -51.93 -0.41 0.88 16 39 H 0.15 2.37 4.90 -53.73 -0.26 2.11 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.14 0.90 8.13 -51.93 -0.42 0.48 16 42 H 0.12 1.47 4.10 -51.93 -0.21 1.26 16 43 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.12 1.38 4.55 -51.93 -0.24 1.14 16 LS Contribution 334.30 15.07 5.04 5.04 Total: -1.00 -31.01 334.30 -8.95 -39.96 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -6.86 Total: 8.37 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -2.56 Total: -13.63 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.04 Total: -45.87 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.06 Total: -10.74 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.01 -8.95 -39.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602317669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.621 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds