Wall clock time and date at job start Fri Apr 10 2020 17:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47396 * 2 1 4 4 C 1.50700 * 109.47473 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99827 * 87.99000 * 4 3 2 6 6 C 1.32995 * 120.00008 * 267.99407 * 4 3 2 7 7 C 1.47096 * 120.00048 * 8.64140 * 6 4 3 8 8 O 1.21617 * 120.00117 * 359.87880 * 7 6 4 9 9 N 1.34769 * 120.00115 * 179.88314 * 7 6 4 10 10 C 1.46506 * 120.00055 * 179.97438 * 9 7 6 11 11 C 1.53041 * 109.45856 * 275.06265 * 10 9 7 12 12 C 1.53194 * 109.31006 * 178.61430 * 11 10 9 13 13 N 1.46924 * 108.77509 * 54.64006 * 12 11 10 14 14 C 1.36936 * 120.63293 * 126.41211 * 13 12 11 15 15 H 1.08002 * 119.99712 * 320.60998 * 14 13 12 16 16 C 1.38810 * 119.99910 * 140.60460 * 14 13 12 17 17 N 1.31624 * 119.99662 * 169.81863 * 16 14 13 18 18 Si 1.86798 * 120.00197 * 349.82256 * 16 14 13 19 19 H 1.48502 * 109.47365 * 84.47720 * 18 16 14 20 20 H 1.48500 * 109.47026 * 204.47526 * 18 16 14 21 21 H 1.48495 * 109.47345 * 324.47282 * 18 16 14 22 22 C 1.46925 * 118.73772 * 306.38496 * 13 12 11 23 23 C 1.53046 * 109.45794 * 154.99824 * 10 9 7 24 24 H 1.09010 * 109.47054 * 60.00445 * 1 2 3 25 25 H 1.09007 * 109.47594 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47464 * 300.00031 * 1 2 3 27 27 H 1.09005 * 109.47137 * 239.99489 * 2 1 3 28 28 H 1.09007 * 109.47278 * 120.00031 * 2 1 3 29 29 H 1.08995 * 109.47360 * 59.99648 * 3 2 1 30 30 H 1.09001 * 109.46760 * 299.99544 * 3 2 1 31 31 H 1.08994 * 109.47092 * 269.99923 * 5 4 3 32 32 H 1.08998 * 109.47338 * 30.00454 * 5 4 3 33 33 H 1.08997 * 109.46771 * 150.00160 * 5 4 3 34 34 H 1.08001 * 119.99735 * 188.36520 * 6 4 3 35 35 H 0.97005 * 120.00448 * 359.97438 * 9 7 6 36 36 H 1.08994 * 109.45811 * 35.02432 * 10 9 7 37 37 H 1.09002 * 109.50008 * 298.56627 * 11 10 9 38 38 H 1.08998 * 109.49219 * 58.66772 * 11 10 9 39 39 H 1.08997 * 109.58613 * 294.84710 * 12 11 10 40 40 H 1.08997 * 109.70131 * 174.49391 * 12 11 10 41 41 H 0.97001 * 120.00099 * 180.02562 * 17 16 14 42 42 H 1.08996 * 109.59204 * 293.82384 * 22 13 12 43 43 H 1.09001 * 109.70415 * 173.46768 * 22 13 12 44 44 H 1.08998 * 109.49610 * 301.33612 * 23 10 9 45 45 H 1.08998 * 109.49927 * 61.40362 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3010 1.3965 -1.3034 6 6 4.2115 1.4829 1.1520 7 6 3.4880 1.3362 2.4243 8 8 2.2819 1.1800 2.4235 9 7 4.1616 1.3748 3.5909 10 6 3.4410 1.2292 4.8581 11 6 2.8965 2.5913 5.2944 12 6 2.1143 2.4292 6.6016 13 7 2.9815 1.7799 7.5941 14 6 3.1819 2.3483 8.8238 15 1 3.2947 3.4188 8.9119 16 6 3.2397 1.5487 9.9569 17 7 3.6288 2.0614 11.1050 18 14 2.7654 -0.2551 9.8524 19 1 3.9338 -1.0484 9.3932 20 1 2.3383 -0.7330 11.1920 21 1 1.6471 -0.4179 8.8891 22 6 3.6293 0.5089 7.2425 23 6 4.3945 0.6926 5.9281 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9562 -0.8901 31 1 4.4828 0.3584 -1.5816 32 1 3.7123 1.8833 -2.0809 33 1 5.2533 1.9146 -1.1908 34 1 5.2828 1.6191 1.1526 35 1 5.1237 1.4991 3.5916 36 1 2.6131 0.5325 4.7270 37 1 3.7256 3.2818 5.4498 38 1 2.2358 2.9835 4.5213 39 1 1.2336 1.8115 6.4261 40 1 1.8068 3.4079 6.9697 41 1 3.6697 1.5026 11.8968 42 1 2.8721 -0.2654 7.1194 43 1 4.3230 0.2193 8.0318 44 1 4.8000 -0.2666 5.6061 45 1 5.2097 1.4006 6.0771 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730503513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:43 Heat of formation + Delta-G solvation = -35.459424 kcal Electronic energy + Delta-G solvation = -22529.931425 eV Core-core repulsion = 19353.871153 eV Total energy + Delta-G solvation = -3176.060273 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.10120 -39.36612 -37.26878 -35.81610 -34.18235 -33.74241 -31.97022 -31.84872 -28.89427 -27.76522 -26.61088 -24.48769 -23.69254 -22.65812 -21.81307 -21.27174 -19.69514 -18.76080 -17.90830 -17.39401 -16.67920 -16.19229 -15.94356 -15.82928 -15.35542 -15.26413 -14.77625 -14.64135 -14.46421 -14.39917 -14.10517 -13.85983 -13.70496 -13.45201 -13.41517 -13.10069 -12.64964 -12.63961 -12.51601 -12.25793 -12.08587 -12.06398 -11.86746 -11.79106 -11.63102 -11.45690 -11.37138 -10.75567 -10.31540 -10.10878 -9.74367 -8.78862 -8.19194 -5.67445 0.47279 1.29098 1.40312 1.50121 2.33455 2.39717 2.40345 3.10045 3.27816 3.75707 3.84978 3.91365 4.00169 4.19544 4.23286 4.29236 4.31567 4.42801 4.48458 4.57600 4.62385 4.63338 4.72617 4.81999 4.83927 4.88783 4.93169 4.99542 5.02211 5.06124 5.07489 5.10723 5.15493 5.23319 5.38171 5.40119 5.43835 5.55931 5.69073 5.79680 5.93219 6.14509 6.73995 6.92435 7.42427 7.56340 8.03124 9.00253 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030191 B = 0.003668 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.217320 B = 7632.431128 C = 7932.285413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.108 4.108 4 C -0.025 4.025 5 C -0.123 4.123 6 C -0.243 4.243 7 C 0.533 3.467 8 O -0.568 6.568 9 N -0.714 5.714 10 C 0.162 3.838 11 C -0.125 4.125 12 C 0.147 3.853 13 N -0.620 5.620 14 C -0.256 4.256 15 H 0.045 0.955 16 C -0.025 4.025 17 N -0.959 5.959 18 Si 0.954 3.046 19 H -0.262 1.262 20 H -0.308 1.308 21 H -0.268 1.268 22 C 0.121 3.879 23 C -0.127 4.127 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.151 0.849 35 H 0.411 0.589 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.025 0.975 40 H 0.056 0.944 41 H 0.264 0.736 42 H 0.028 0.972 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.698 -4.280 -27.318 27.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.136 4.136 3 C -0.145 4.145 4 C -0.027 4.027 5 C -0.179 4.179 6 C -0.263 4.263 7 C 0.325 3.675 8 O -0.451 6.451 9 N -0.364 5.364 10 C 0.057 3.943 11 C -0.166 4.166 12 C 0.021 3.979 13 N -0.345 5.345 14 C -0.386 4.386 15 H 0.062 0.938 16 C -0.220 4.220 17 N -0.604 5.604 18 Si 0.782 3.218 19 H -0.187 1.187 20 H -0.237 1.237 21 H -0.193 1.193 22 C -0.004 4.004 23 C -0.166 4.166 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.169 0.831 35 H 0.247 0.753 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.046 0.954 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.889 -4.411 -27.142 27.563 hybrid contribution 0.130 -0.420 1.016 1.107 sum 2.019 -4.831 -26.125 26.645 Atomic orbital electron populations 1.21704 0.95729 1.01520 1.01410 1.21204 0.95941 0.95640 1.00848 1.21165 0.91641 0.98391 1.03309 1.22835 0.96104 0.88068 0.95680 1.21055 1.00270 1.03794 0.92789 1.22478 1.01292 1.11836 0.90723 1.19153 0.87139 0.76012 0.85201 1.90708 1.15636 1.50962 1.87747 1.45979 1.11790 1.73716 1.04915 1.20590 0.94649 0.96391 0.82638 1.22174 1.00097 0.97385 0.96895 1.21018 0.91720 0.96660 0.88466 1.44424 1.52925 1.24212 1.12966 1.18754 1.43990 0.92453 0.83389 0.93767 1.26217 0.98675 1.02658 0.94463 1.69901 1.51549 1.38018 1.00906 0.85809 0.79463 0.81066 0.75510 1.18726 1.23657 1.19297 1.21400 0.95010 0.87848 0.96118 1.22146 0.98221 1.02076 0.94168 0.91715 0.92597 0.94356 0.91366 0.94038 0.90088 0.90715 0.89207 0.90196 0.89827 0.83134 0.75271 0.91631 0.92106 0.91923 0.95654 0.92579 0.92716 0.95408 0.92267 0.89430 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.91 71.98 0.71 -2.19 16 2 C -0.10 -2.02 5.48 30.59 0.17 -1.86 16 3 C -0.11 -2.19 4.61 29.85 0.14 -2.05 16 4 C -0.02 -0.42 5.36 -17.61 -0.09 -0.51 16 5 C -0.12 -1.15 10.05 71.24 0.72 -0.43 16 6 C -0.24 -4.47 9.63 23.43 0.23 -4.24 16 7 C 0.53 13.79 7.64 86.57 0.66 14.46 16 8 O -0.57 -18.43 11.32 -4.09 -0.05 -18.48 16 9 N -0.71 -17.36 5.07 -446.00 -2.26 -19.63 16 10 C 0.16 5.03 2.42 45.02 0.11 5.13 16 11 C -0.13 -4.29 5.65 30.67 0.17 -4.12 16 12 C 0.15 6.08 6.52 86.36 0.56 6.64 16 13 N -0.62 -29.68 2.62 -699.10 -1.83 -31.51 16 14 C -0.26 -14.75 9.98 84.03 0.84 -13.91 16 15 H 0.04 2.82 8.06 -2.91 -0.02 2.79 16 16 C -0.02 -1.44 5.34 84.86 0.45 -0.99 16 17 N -0.96 -60.51 13.97 21.65 0.30 -60.20 16 18 Si 0.95 46.90 24.37 68.60 1.67 48.57 16 19 H -0.26 -11.79 6.52 99.48 0.65 -11.15 16 20 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 21 H -0.27 -12.95 6.81 99.48 0.68 -12.28 16 22 C 0.12 5.06 4.19 86.36 0.36 5.42 16 23 C -0.13 -4.00 5.55 30.68 0.17 -3.83 16 24 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.04 1.07 7.03 -2.38 -0.02 1.05 16 29 H 0.08 2.20 5.47 -2.39 -0.01 2.18 16 30 H 0.07 1.22 8.06 -2.39 -0.02 1.20 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.61 8.05 -2.39 -0.02 0.59 16 33 H 0.08 0.58 8.05 -2.39 -0.02 0.56 16 34 H 0.15 1.85 8.04 -2.91 -0.02 1.83 16 35 H 0.41 7.55 8.59 -92.70 -0.80 6.75 16 36 H 0.07 2.30 7.58 -2.39 -0.02 2.28 16 37 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 41 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 42 H 0.03 1.15 6.95 -2.39 -0.02 1.14 16 43 H 0.06 2.65 5.21 -2.39 -0.01 2.64 16 44 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -70.13 348.85 3.10 -67.03 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.07 Total: 16.69 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 5.20 Total: -2.47 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -3.79 Total: -111.35 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.05 Total: -18.48 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.67 Total: 48.57 kcal Total: -70.13 3.10 -67.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730503513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.568 kcal (2) G-P(sol) polarization free energy of solvation -70.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds