Wall clock time and date at job start Fri Apr 10 2020 17:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50707 * 109.46710 * 2 1 4 4 C 1.32992 * 119.99516 * 120.96107 * 3 2 1 5 5 C 1.50701 * 119.99692 * 176.58905 * 4 3 2 6 6 C 1.47096 * 120.00402 * 356.58638 * 4 3 2 7 7 O 1.21617 * 120.00418 * 255.84037 * 6 4 3 8 8 N 1.34780 * 119.99984 * 75.83613 * 6 4 3 9 9 C 1.46503 * 119.99977 * 179.72482 * 8 6 4 10 10 C 1.52997 * 109.47141 * 180.27985 * 9 8 6 11 11 H 1.08996 * 109.49841 * 55.06249 * 10 9 8 12 12 C 1.53039 * 109.49869 * 175.16482 * 10 9 8 13 13 C 1.53041 * 109.53932 * 181.31373 * 12 10 9 14 14 C 1.53194 * 109.31335 * 298.63371 * 13 12 10 15 15 N 1.46931 * 108.77505 * 54.63589 * 14 13 12 16 16 C 1.36927 * 120.63313 * 126.36851 * 15 14 13 17 17 H 1.08005 * 120.00102 * 331.01758 * 16 15 14 18 18 C 1.38810 * 120.00122 * 151.01136 * 16 15 14 19 19 N 1.31621 * 120.00159 * 341.81755 * 18 16 15 20 20 Si 1.86801 * 120.00036 * 161.81500 * 18 16 15 21 21 H 1.48504 * 109.46944 * 90.00034 * 20 18 16 22 22 H 1.48503 * 109.47498 * 210.00021 * 20 18 16 23 23 H 1.48500 * 109.47116 * 330.00679 * 20 18 16 24 24 C 1.46926 * 118.73405 * 306.38785 * 15 14 13 25 25 H 1.08994 * 109.46850 * 299.99594 * 1 2 3 26 26 H 1.09000 * 109.46719 * 59.99920 * 1 2 3 27 27 H 1.09000 * 109.46424 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47314 * 240.00444 * 2 1 3 29 29 H 1.08994 * 109.47104 * 120.00136 * 2 1 3 30 30 H 1.07997 * 120.00001 * 300.95324 * 3 2 1 31 31 H 1.09006 * 109.46984 * 269.99683 * 5 4 3 32 32 H 1.08994 * 109.47471 * 29.99521 * 5 4 3 33 33 H 1.08999 * 109.46846 * 149.99931 * 5 4 3 34 34 H 0.97001 * 120.00288 * 0.02562 * 8 6 4 35 35 H 1.09000 * 109.47389 * 300.28157 * 9 8 6 36 36 H 1.08997 * 109.46933 * 60.27926 * 9 8 6 37 37 H 1.08996 * 109.46141 * 301.33729 * 12 10 9 38 38 H 1.09003 * 109.45753 * 61.29465 * 12 10 9 39 39 H 1.08994 * 109.49641 * 178.68037 * 13 12 10 40 40 H 1.09000 * 109.52099 * 58.60571 * 13 12 10 41 41 H 1.08993 * 109.58594 * 294.84967 * 14 13 12 42 42 H 1.08995 * 109.70125 * 174.48844 * 14 13 12 43 43 H 0.96999 * 119.99644 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.59118 * 293.82234 * 24 15 14 45 45 H 1.09002 * 109.58643 * 173.39500 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8126 1.8503 0.9877 5 6 3.3775 3.2469 0.9488 6 6 3.1241 0.9621 2.1181 7 8 2.5746 1.1270 3.1905 8 7 4.0186 -0.0345 1.9655 9 6 4.3333 -0.9153 3.0931 10 6 5.3745 -1.9484 2.6580 11 1 6.2466 -1.4369 2.2509 12 6 5.7930 -2.7914 3.8648 13 6 6.8584 -3.8035 3.4375 14 6 6.2721 -4.7383 2.3748 15 7 5.7358 -3.9257 1.2743 16 6 6.1277 -4.1550 -0.0175 17 1 7.1088 -4.5582 -0.2207 18 6 5.2639 -3.8695 -1.0660 19 7 3.9757 -3.7260 -0.8370 20 14 5.9297 -3.6888 -2.8019 21 1 5.9152 -5.0111 -3.4777 22 1 5.0810 -2.7356 -3.5610 23 1 7.3224 -3.1763 -2.7471 24 6 4.7713 -2.8622 1.5864 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.7587 2.0903 -0.8021 31 1 4.3403 3.2352 0.4379 32 1 2.6902 3.9021 0.4137 33 1 3.5107 3.6134 1.9666 34 1 4.4571 -0.1659 1.1103 35 1 4.7315 -0.3228 3.9168 36 1 3.4275 -1.4270 3.4182 37 1 6.1999 -2.1407 4.6387 38 1 4.9246 -3.3216 4.2560 39 1 7.1728 -4.3877 4.3022 40 1 7.7173 -3.2753 3.0235 41 1 5.4712 -5.3334 2.8134 42 1 7.0521 -5.3982 1.9952 43 1 3.3723 -3.5261 -1.5696 44 1 3.8481 -3.3044 1.9608 45 1 4.5628 -2.2825 0.6872 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742183104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:50 Heat of formation + Delta-G solvation = -44.058549 kcal Electronic energy + Delta-G solvation = -23116.859081 eV Core-core repulsion = 19940.425922 eV Total energy + Delta-G solvation = -3176.433159 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06607 -39.37669 -36.78614 -36.13364 -34.76794 -33.18415 -32.42404 -31.51647 -27.98286 -27.32299 -26.96972 -24.25764 -23.75176 -22.90200 -22.17607 -20.89962 -19.90627 -18.67376 -17.46242 -17.04315 -16.74093 -16.68795 -15.86599 -15.68447 -15.25236 -15.11845 -14.89254 -14.55532 -14.35828 -14.04360 -13.96181 -13.83287 -13.74254 -13.52505 -13.26553 -12.95696 -12.91848 -12.87790 -12.53243 -12.23874 -12.04100 -11.99123 -11.90671 -11.80018 -11.56737 -11.34620 -11.09562 -10.85825 -10.52760 -10.09237 -9.93166 -8.63573 -7.84503 -5.30213 0.80433 1.46979 1.49761 1.58633 1.60618 2.30657 2.52840 3.27706 3.59799 3.69315 3.88636 3.99351 4.06013 4.10578 4.14042 4.34219 4.38020 4.49181 4.52791 4.55436 4.61812 4.74607 4.78813 4.80333 4.86982 4.87460 4.96381 5.02747 5.08443 5.14635 5.16810 5.22495 5.24676 5.33989 5.37597 5.42426 5.47094 5.54604 5.65714 5.69048 5.76357 6.41806 6.47903 7.14646 7.17717 7.87846 8.41723 9.20849 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012590 B = 0.006562 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.503991 B = 4265.812062 C = 5660.067381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C -0.095 4.095 4 C -0.189 4.189 5 C -0.096 4.096 6 C 0.557 3.443 7 O -0.588 6.588 8 N -0.712 5.712 9 C 0.136 3.864 10 C -0.111 4.111 11 H 0.071 0.929 12 C -0.099 4.099 13 C -0.121 4.121 14 C 0.136 3.864 15 N -0.610 5.610 16 C -0.268 4.268 17 H 0.061 0.939 18 C -0.040 4.040 19 N -0.924 5.924 20 Si 0.958 3.042 21 H -0.290 1.290 22 H -0.288 1.288 23 H -0.272 1.272 24 C 0.194 3.806 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.157 0.843 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.407 0.593 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.008 0.992 42 H 0.051 0.949 43 H 0.250 0.750 44 H -0.015 1.015 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.068 10.639 2.928 11.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C -0.113 4.113 4 C -0.192 4.192 5 C -0.153 4.153 6 C 0.345 3.655 7 O -0.469 6.469 8 N -0.362 5.362 9 C 0.011 3.989 10 C -0.132 4.132 11 H 0.089 0.911 12 C -0.137 4.137 13 C -0.160 4.160 14 C 0.010 3.990 15 N -0.333 5.333 16 C -0.398 4.398 17 H 0.079 0.921 18 C -0.237 4.237 19 N -0.569 5.569 20 Si 0.787 3.213 21 H -0.217 1.217 22 H -0.214 1.214 23 H -0.197 1.197 24 C 0.068 3.932 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.175 0.825 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.243 0.757 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.026 0.974 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.003 0.997 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.551 10.738 3.587 11.335 hybrid contribution 0.147 -0.599 -1.288 1.428 sum -0.405 10.139 2.298 10.404 Atomic orbital electron populations 1.21620 0.93517 1.01946 1.02473 1.20824 0.97796 0.94395 1.02131 1.23600 0.94591 0.96741 0.96380 1.21663 1.04082 0.98531 0.94908 1.20678 1.01904 0.89868 1.02880 1.18974 0.77940 0.80218 0.88371 1.90742 1.53147 1.73588 1.29442 1.46236 1.43001 1.31206 1.15727 1.21302 0.97882 0.90955 0.88721 1.21908 0.97566 0.95705 0.97979 0.91085 1.21361 0.98757 0.97460 0.96138 1.21865 0.97836 0.97773 0.98517 1.21112 0.95777 0.92900 0.89195 1.44302 1.51089 1.35369 1.02572 1.19418 0.96911 1.40095 0.83374 0.92083 1.25698 0.94936 1.01964 1.01078 1.70201 1.02064 1.52876 1.31746 0.85434 0.77933 0.77285 0.80696 1.21709 1.21383 1.19734 1.20510 0.88820 0.88459 0.95437 0.93160 0.90339 0.92904 0.90582 0.93897 0.82522 0.89723 0.88885 0.92409 0.75706 0.90837 0.93399 0.90186 0.92815 0.89885 0.92396 0.97392 0.93046 0.94056 0.99693 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.89 71.98 0.71 -2.80 16 2 C -0.11 -3.37 6.21 29.85 0.19 -3.18 16 3 C -0.09 -2.32 9.20 24.52 0.23 -2.09 16 4 C -0.19 -5.06 5.75 -18.71 -0.11 -5.17 16 5 C -0.10 -1.90 10.03 71.24 0.71 -1.19 16 6 C 0.56 18.94 5.51 86.57 0.48 19.42 16 7 O -0.59 -24.04 17.11 -4.08 -0.07 -24.11 16 8 N -0.71 -23.66 4.78 -466.71 -2.23 -25.88 16 9 C 0.14 4.55 5.07 86.38 0.44 4.99 16 10 C -0.11 -3.92 2.38 -10.71 -0.03 -3.95 16 11 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 12 C -0.10 -3.05 5.17 30.62 0.16 -2.89 16 13 C -0.12 -3.83 6.08 30.67 0.19 -3.65 16 14 C 0.14 5.54 6.52 86.36 0.56 6.10 16 15 N -0.61 -29.85 2.99 -699.09 -2.09 -31.94 16 16 C -0.27 -14.34 9.56 84.03 0.80 -13.53 16 17 H 0.06 3.23 7.89 -2.91 -0.02 3.21 16 18 C -0.04 -2.16 4.87 84.86 0.41 -1.75 16 19 N -0.92 -51.95 11.35 21.65 0.25 -51.70 16 20 Si 0.96 43.03 29.59 68.60 2.03 45.06 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 C 0.19 8.87 4.39 86.37 0.38 9.25 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 29 H 0.04 1.53 5.88 -2.39 -0.01 1.52 16 30 H 0.16 2.75 8.05 -2.91 -0.02 2.73 16 31 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.09 1.38 8.06 -2.39 -0.02 1.36 16 33 H 0.06 1.23 8.11 -2.39 -0.02 1.21 16 34 H 0.41 13.39 7.68 -92.71 -0.71 12.67 16 35 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 43 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 44 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 45 H 0.06 3.06 5.37 -2.39 -0.01 3.04 16 Total: -1.00 -65.51 359.03 3.25 -62.26 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.24 Total: 26.77 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 5.12 Total: -0.45 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -4.07 Total: -109.53 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.07 Total: -24.11 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -65.51 3.25 -62.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742183104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.202 kcal (2) G-P(sol) polarization free energy of solvation -65.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds