Wall clock time and date at job start Fri Apr 10 2020 17:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.46798 * 2 1 4 4 C 1.32993 * 119.99936 * 174.68925 * 3 2 1 5 5 C 1.50693 * 119.99876 * 186.03999 * 4 3 2 6 6 C 1.47107 * 120.00151 * 6.03493 * 4 3 2 7 7 O 1.21608 * 119.99884 * 6.32087 * 6 4 3 8 8 N 1.34774 * 119.99928 * 186.31552 * 6 4 3 9 9 C 1.46497 * 119.99591 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.47087 * 180.02562 * 9 8 6 11 11 H 1.09007 * 109.50112 * 305.00796 * 10 9 8 12 12 C 1.53033 * 109.50428 * 184.93680 * 10 9 8 13 13 C 1.53032 * 109.54679 * 178.71665 * 12 10 9 14 14 C 1.53198 * 109.33829 * 61.31392 * 13 12 10 15 15 N 1.46920 * 108.77402 * 305.38431 * 14 13 12 16 16 C 1.36937 * 120.63218 * 233.62285 * 15 14 13 17 17 H 1.07996 * 120.00211 * 143.81457 * 16 15 14 18 18 C 1.38815 * 120.00018 * 323.82321 * 16 15 14 19 19 N 1.31617 * 119.99842 * 2.65523 * 18 16 15 20 20 Si 1.86804 * 119.99826 * 182.65465 * 18 16 15 21 21 H 1.48503 * 109.46908 * 60.00299 * 20 18 16 22 22 H 1.48498 * 109.46831 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47201 * 299.99694 * 20 18 16 24 24 C 1.46930 * 118.73930 * 53.61037 * 15 14 13 25 25 H 1.09001 * 109.47586 * 300.00118 * 1 2 3 26 26 H 1.09003 * 109.47235 * 60.00844 * 1 2 3 27 27 H 1.09009 * 109.46561 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47586 * 239.99882 * 2 1 3 29 29 H 1.09003 * 109.47235 * 119.99156 * 2 1 3 30 30 H 1.07993 * 119.99807 * 354.67798 * 3 2 1 31 31 H 1.09000 * 109.47260 * 89.99921 * 5 4 3 32 32 H 1.09005 * 109.47315 * 209.99666 * 5 4 3 33 33 H 1.09003 * 109.47534 * 329.99566 * 5 4 3 34 34 H 0.96999 * 120.00441 * 0.02562 * 8 6 4 35 35 H 1.08996 * 109.47623 * 299.99851 * 9 8 6 36 36 H 1.09004 * 109.47250 * 60.00758 * 9 8 6 37 37 H 1.09008 * 109.45896 * 298.70969 * 12 10 9 38 38 H 1.09005 * 109.45986 * 58.66025 * 12 10 9 39 39 H 1.09003 * 109.46963 * 301.36477 * 13 12 10 40 40 H 1.08996 * 109.53076 * 181.30253 * 13 12 10 41 41 H 1.08998 * 109.58704 * 185.59498 * 14 13 12 42 42 H 1.09000 * 109.69660 * 65.24274 * 14 13 12 43 43 H 0.97003 * 119.99935 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.58390 * 186.59586 * 24 15 14 45 45 H 1.08996 * 109.70243 * 66.24845 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 3.3351 1.6656 0.1066 5 6 3.8267 3.0835 0.2437 6 6 4.2964 0.5522 0.0908 7 8 3.9124 -0.5795 -0.1344 8 7 5.6027 0.7863 0.3259 9 6 6.5598 -0.3226 0.3108 10 6 7.9632 0.2109 0.6053 11 1 8.2065 1.0045 -0.1013 12 6 8.9805 -0.9242 0.4686 13 6 10.3881 -0.3846 0.7317 14 6 10.4628 0.1630 2.1605 15 7 9.3929 1.1531 2.3439 16 6 9.6789 2.4136 2.7960 17 1 9.1286 3.2615 2.4158 18 6 10.6763 2.6017 3.7431 19 7 11.3824 1.5754 4.1677 20 14 11.0161 4.3114 4.4147 21 1 9.7929 4.8368 5.0727 22 1 12.1202 4.2435 5.4054 23 1 11.4050 5.2126 3.3004 24 6 8.0104 0.7652 2.0326 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8901 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8901 30 1 1.3342 2.2403 -0.0867 31 1 3.8755 3.3507 1.2993 32 1 4.8192 3.1684 -0.1989 33 1 3.1409 3.7572 -0.2703 34 1 5.9090 1.6889 0.5059 35 1 6.2822 -1.0527 1.0710 36 1 6.5499 -0.7978 -0.6702 37 1 8.7509 -1.7066 1.1921 38 1 8.9315 -1.3363 -0.5393 39 1 10.6091 0.4143 0.0239 40 1 11.1147 -1.1882 0.6116 41 1 11.4310 0.6374 2.3199 42 1 10.3331 -0.6514 2.8733 43 1 12.0796 1.7068 4.8292 44 1 7.3605 1.6371 2.1078 45 1 7.6769 -0.0004 2.7332 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742183106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:53 Heat of formation + Delta-G solvation = -25.836523 kcal Electronic energy + Delta-G solvation = -22333.477251 eV Core-core repulsion = 19157.834259 eV Total energy + Delta-G solvation = -3175.642992 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.90470 -37.85336 -35.63948 -34.72684 -33.18499 -32.26191 -30.42178 -30.17696 -27.06024 -25.72330 -25.26962 -22.99746 -22.07308 -21.74624 -20.73690 -19.50083 -18.73019 -16.75269 -16.22578 -15.85333 -15.42147 -14.86176 -14.60121 -14.05070 -13.99907 -13.93038 -13.57473 -13.38277 -13.15484 -12.79311 -12.74363 -12.55461 -12.26900 -12.16497 -12.11294 -11.72672 -11.35821 -11.30950 -11.16590 -10.89583 -10.77031 -10.54173 -10.21875 -10.16377 -9.91392 -9.67522 -9.44632 -9.42681 -9.15333 -8.72998 -8.46460 -6.55009 -5.80419 -3.34623 1.36950 3.33315 3.35376 3.41008 3.41234 3.42039 4.44764 4.61620 4.75371 5.06115 5.11342 5.16698 5.25248 5.32812 5.33657 5.42949 5.50089 5.51642 5.58369 5.66197 5.78915 5.86034 5.89926 5.97960 6.02642 6.03580 6.12865 6.26690 6.33211 6.36902 6.41376 6.51528 6.59248 6.62695 6.74403 6.81374 6.90251 6.99152 7.46373 7.69500 7.74786 7.80712 8.36762 8.50936 9.22901 9.81609 10.42544 11.25889 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020455 B = 0.003842 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.497542 B = 7286.593480 C = 8309.233848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.095 4.095 3 C -0.072 4.072 4 C -0.193 4.193 5 C -0.117 4.117 6 C 0.547 3.453 7 O -0.546 6.546 8 N -0.720 5.720 9 C 0.127 3.873 10 C -0.118 4.118 11 H 0.071 0.929 12 C -0.099 4.099 13 C -0.143 4.143 14 C 0.167 3.833 15 N -0.593 5.593 16 C -0.257 4.257 17 H 0.062 0.938 18 C 0.010 3.990 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.155 3.845 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.403 0.597 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.094 0.906 42 H 0.015 0.985 43 H 0.255 0.745 44 H 0.049 0.951 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.696 -0.556 -8.825 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.131 4.131 3 C -0.091 4.091 4 C -0.196 4.196 5 C -0.174 4.174 6 C 0.336 3.664 7 O -0.426 6.426 8 N -0.371 5.371 9 C 0.003 3.997 10 C -0.139 4.139 11 H 0.090 0.910 12 C -0.137 4.137 13 C -0.182 4.182 14 C 0.041 3.959 15 N -0.315 5.315 16 C -0.387 4.387 17 H 0.079 0.921 18 C -0.189 4.189 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.028 3.972 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.140 0.860 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.238 0.762 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.033 0.967 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -14.773 -1.355 -8.828 17.263 hybrid contribution 0.419 1.365 0.503 1.514 sum -14.354 0.009 -8.325 16.593 Atomic orbital electron populations 1.21904 0.96260 1.01725 1.01392 1.20792 0.94399 0.93640 1.04296 1.23666 0.94499 0.98750 0.92226 1.21533 0.94445 0.95460 1.08140 1.20793 1.01774 0.92056 1.02727 1.18404 0.82453 0.88610 0.76949 1.90750 1.78721 1.23527 1.49594 1.46056 1.07329 1.12185 1.71569 1.21448 0.88080 0.88856 1.01268 1.21957 0.92045 0.98756 1.01113 0.91035 1.21337 0.95752 0.96791 0.99861 1.22207 0.94695 0.99301 1.02007 1.20922 0.94846 0.91109 0.88996 1.43953 0.99870 1.10963 1.76716 1.19071 1.18827 0.84159 1.16663 0.92081 1.25342 0.99671 0.97162 0.96681 1.69906 1.23326 1.29048 1.32384 0.86373 0.77542 0.84039 0.78785 1.20827 1.21568 1.20906 1.20909 0.88350 0.96873 0.91074 0.92936 0.92922 0.92601 0.89121 0.89994 0.85977 0.90725 0.91567 0.91320 0.76155 0.91656 0.92083 0.92546 0.93569 0.92920 0.93312 0.88747 0.96672 0.93442 0.93254 0.96402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.85 37.16 0.37 -0.94 16 2 C -0.09 -1.04 4.51 -27.88 -0.13 -1.17 16 3 C -0.07 -0.74 9.25 -36.12 -0.33 -1.07 16 4 C -0.19 -2.23 5.99 -102.85 -0.62 -2.84 16 5 C -0.12 -1.07 9.48 36.00 0.34 -0.73 16 6 C 0.55 7.93 7.66 -12.66 -0.10 7.83 16 7 O -0.55 -9.28 13.22 5.27 0.07 -9.21 16 8 N -0.72 -10.09 5.26 -61.49 -0.32 -10.41 16 9 C 0.13 1.92 5.07 -4.04 -0.02 1.90 16 10 C -0.12 -1.97 2.37 -90.50 -0.21 -2.19 16 11 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 12 C -0.10 -1.66 5.17 -26.70 -0.14 -1.80 16 13 C -0.14 -2.72 6.08 -26.61 -0.16 -2.88 16 14 C 0.17 3.97 5.24 -3.71 -0.02 3.95 16 15 N -0.59 -14.58 2.99 -172.32 -0.52 -15.10 16 16 C -0.26 -6.91 9.54 -15.06 -0.14 -7.05 16 17 H 0.06 1.59 7.83 -52.49 -0.41 1.18 16 18 C 0.01 0.29 5.29 -17.43 -0.09 0.19 16 19 N -0.90 -25.81 10.74 55.49 0.60 -25.22 16 20 Si 0.90 21.25 29.55 -169.99 -5.02 16.23 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 C 0.15 3.14 5.60 -3.71 -0.02 3.12 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.09 1.15 7.06 -51.93 -0.37 0.78 16 29 H 0.08 1.05 7.45 -51.93 -0.39 0.66 16 30 H 0.12 0.95 7.98 -52.49 -0.42 0.53 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.60 6.97 -51.93 -0.36 0.24 16 33 H 0.07 0.52 8.06 -51.93 -0.42 0.10 16 34 H 0.40 5.17 5.96 -40.82 -0.24 4.93 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 2.53 6.04 -51.93 -0.31 2.21 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.05 0.96 7.14 -51.93 -0.37 0.59 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -29.98 352.84 -9.08 -39.06 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.92 Total: 3.02 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -1.28 Total: -3.69 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.24 Total: -50.72 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.07 Total: -9.21 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.98 -9.08 -39.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742183106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.223 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds