Wall clock time and date at job start Fri Apr 10 2020 17:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47154 * 2 1 4 4 C 1.32997 * 120.00232 * 233.11937 * 3 2 1 5 5 C 1.50704 * 119.99406 * 354.55006 * 4 3 2 6 6 C 1.47094 * 120.00051 * 174.54867 * 4 3 2 7 7 O 1.21605 * 120.00282 * 0.02562 * 6 4 3 8 8 N 1.34775 * 119.99823 * 180.02562 * 6 4 3 9 9 C 1.46501 * 120.00302 * 180.02562 * 8 6 4 10 10 C 1.52998 * 109.47556 * 179.97438 * 9 8 6 11 11 C 1.53042 * 109.46057 * 295.02608 * 10 9 8 12 12 C 1.53190 * 109.31326 * 178.60085 * 11 10 9 13 13 N 1.46917 * 108.76567 * 54.65517 * 12 11 10 14 14 C 1.36945 * 120.63193 * 126.40509 * 13 12 11 15 15 H 1.08000 * 119.99856 * 329.31120 * 14 13 12 16 16 C 1.38806 * 120.00017 * 149.30521 * 14 13 12 17 17 N 1.31622 * 120.00392 * 348.01913 * 16 14 13 18 18 Si 1.86801 * 119.99877 * 168.00972 * 16 14 13 19 19 H 1.48504 * 109.47196 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46941 * 120.00379 * 18 16 14 21 21 H 1.48505 * 109.47263 * 240.00440 * 18 16 14 22 22 C 1.46924 * 118.74013 * 306.38433 * 13 12 11 23 23 C 1.53034 * 109.46336 * 174.97268 * 10 9 8 24 24 H 1.09009 * 109.47103 * 60.00215 * 1 2 3 25 25 H 1.09001 * 109.47168 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47458 * 299.99873 * 1 2 3 27 27 H 1.08999 * 109.47282 * 239.99604 * 2 1 3 28 28 H 1.08999 * 109.46979 * 120.00329 * 2 1 3 29 29 H 1.08005 * 120.00194 * 53.11706 * 3 2 1 30 30 H 1.09001 * 109.47026 * 88.11692 * 5 4 3 31 31 H 1.09000 * 109.46784 * 208.11121 * 5 4 3 32 32 H 1.08997 * 109.47418 * 328.11189 * 5 4 3 33 33 H 0.97003 * 120.00408 * 359.97438 * 8 6 4 34 34 H 1.09000 * 109.46732 * 299.99849 * 9 8 6 35 35 H 1.08997 * 109.47393 * 59.99679 * 9 8 6 36 36 H 1.08999 * 109.46057 * 54.99996 * 10 9 8 37 37 H 1.09006 * 109.49808 * 298.56736 * 11 10 9 38 38 H 1.09004 * 109.49875 * 58.65910 * 11 10 9 39 39 H 1.08996 * 109.59592 * 294.86180 * 12 11 10 40 40 H 1.09008 * 109.69973 * 174.50844 * 12 11 10 41 41 H 0.97001 * 119.99821 * 179.97438 * 17 16 14 42 42 H 1.09006 * 109.58659 * 293.81704 * 22 13 12 43 43 H 1.09004 * 109.70321 * 173.46829 * 22 13 12 44 44 H 1.09005 * 109.49527 * 301.33445 * 23 10 9 45 45 H 1.08994 * 109.49895 * 61.39814 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9057 1.8174 -0.9213 5 6 3.4864 0.8181 -1.8884 6 6 3.3047 3.2312 -0.9962 7 8 2.8364 4.0374 -0.2155 8 7 4.1893 3.6331 -1.9301 9 6 4.5872 5.0411 -2.0044 10 6 5.5934 5.2275 -3.1419 11 6 6.8771 4.4599 -2.8179 12 6 7.8688 4.6201 -3.9745 13 7 8.0707 6.0529 -4.2290 14 6 9.3314 6.5872 -4.2483 15 1 10.1087 6.1595 -3.6325 16 6 9.6103 7.6785 -5.0596 17 7 8.7459 8.0534 -5.9786 18 14 11.2125 8.6151 -4.8469 19 1 12.0058 7.9973 -3.7540 20 1 11.9884 8.5624 -6.1120 21 1 10.9172 10.0300 -4.5058 22 6 6.8943 6.9015 -4.4627 23 6 5.9135 6.7155 -3.3008 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 1.6831 2.1171 0.7481 30 1 2.8367 0.7359 -2.7598 31 1 4.4759 1.1499 -2.2031 32 1 3.5668 -0.1540 -1.4021 33 1 4.5632 2.9900 -2.5527 34 1 3.7081 5.6576 -2.1919 35 1 5.0458 5.3393 -1.0617 36 1 5.1670 4.8467 -4.0699 37 1 7.3175 4.8569 -1.9032 38 1 6.6449 3.4036 -2.6817 39 1 7.4676 4.1431 -4.8687 40 1 8.8200 4.1583 -3.7096 41 1 8.9407 8.8163 -6.5452 42 1 6.4137 6.6107 -5.3968 43 1 7.2002 7.9463 -4.5190 44 1 4.9953 7.2650 -3.5083 45 1 6.3624 7.0912 -2.3814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742186661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:02 Heat of formation + Delta-G solvation = -44.346744 kcal Electronic energy + Delta-G solvation = -21958.586817 eV Core-core repulsion = 18782.141161 eV Total energy + Delta-G solvation = -3176.445656 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.01258 -39.39975 -37.10055 -36.40404 -34.55930 -32.93231 -32.18784 -31.37157 -28.54607 -27.81838 -26.10616 -24.76754 -23.80327 -22.73367 -21.93565 -20.77819 -19.49875 -18.65831 -18.02023 -17.17385 -16.85178 -16.41380 -15.74540 -15.61669 -15.29982 -15.08538 -14.93240 -14.82768 -14.72335 -14.04302 -13.87011 -13.86135 -13.47340 -13.40306 -13.00005 -12.95654 -12.79858 -12.65831 -12.60653 -12.25688 -12.19460 -11.98680 -11.86003 -11.69524 -11.63221 -11.27598 -11.11876 -10.88149 -10.55210 -10.21723 -9.84584 -8.62658 -7.86559 -5.36191 0.38744 1.45293 1.47074 1.57299 2.21679 2.27804 2.50544 3.28581 3.70682 3.71373 3.83308 3.93185 3.97284 4.07316 4.19657 4.30016 4.45723 4.49933 4.53482 4.65586 4.67571 4.73606 4.77443 4.82429 4.87370 4.93544 5.01925 5.08221 5.10962 5.12781 5.15947 5.27787 5.28543 5.35437 5.37608 5.44783 5.55876 5.56724 5.63476 5.66013 5.79994 6.42081 6.56462 7.16819 7.21612 7.87836 8.39382 9.19176 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.046898 B = 0.002846 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.892145 B = 9837.337987 C =10044.814406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C -0.067 4.067 4 C -0.200 4.200 5 C -0.116 4.116 6 C 0.542 3.458 7 O -0.597 6.597 8 N -0.710 5.710 9 C 0.135 3.865 10 C -0.077 4.077 11 C -0.114 4.114 12 C 0.140 3.860 13 N -0.613 5.613 14 C -0.260 4.260 15 H 0.064 0.936 16 C -0.052 4.052 17 N -0.936 5.936 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.178 3.822 23 C -0.123 4.123 24 H 0.050 0.950 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.413 0.587 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.084 0.916 39 H 0.019 0.981 40 H 0.052 0.948 41 H 0.249 0.751 42 H -0.001 1.001 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.753 -17.852 8.990 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.140 4.140 3 C -0.087 4.087 4 C -0.203 4.203 5 C -0.173 4.173 6 C 0.333 3.667 7 O -0.480 6.480 8 N -0.362 5.362 9 C 0.011 3.989 10 C -0.096 4.096 11 C -0.153 4.153 12 C 0.015 3.985 13 N -0.337 5.337 14 C -0.391 4.391 15 H 0.082 0.918 16 C -0.247 4.247 17 N -0.582 5.582 18 Si 0.795 3.205 19 H -0.191 1.191 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.053 3.947 23 C -0.162 4.162 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.123 0.877 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.252 0.748 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.017 0.983 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.015 -17.164 9.396 24.069 hybrid contribution 1.087 1.039 -0.450 1.569 sum -12.928 -16.125 8.946 22.521 Atomic orbital electron populations 1.21709 0.94096 1.02848 1.01893 1.20915 0.96768 0.91652 1.04667 1.23769 0.91862 0.98671 0.94413 1.21519 1.03464 0.92369 1.02908 1.20913 1.00850 0.97598 0.97928 1.19019 0.78250 0.89637 0.79834 1.90746 1.57082 1.56659 1.43482 1.45921 1.44454 1.10698 1.35113 1.21282 0.97244 0.81885 0.98500 1.21143 0.94736 0.96246 0.97512 1.21931 0.95073 0.99886 0.98424 1.21072 0.97421 0.84705 0.95289 1.44310 1.02289 1.03533 1.83539 1.19530 0.88898 1.12659 1.17995 0.91843 1.25883 1.00923 1.02135 0.95753 1.70150 1.37666 1.28443 1.21970 0.85209 0.79745 0.78162 0.77350 1.19140 1.21780 1.21776 1.20557 0.85916 0.95710 0.92546 1.21990 0.99091 0.95583 0.99582 0.93125 0.90544 0.92794 0.88859 0.88917 0.87690 0.89876 0.91117 0.88947 0.74828 0.92135 0.92737 0.90433 0.93230 0.89792 0.96265 0.92929 0.94136 0.98301 0.92984 0.91397 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.89 71.98 0.71 -0.75 16 2 C -0.10 -1.07 5.98 29.85 0.18 -0.89 16 3 C -0.07 -1.18 9.08 24.52 0.22 -0.96 16 4 C -0.20 -3.83 5.99 -18.70 -0.11 -3.94 16 5 C -0.12 -1.36 8.68 71.24 0.62 -0.74 16 6 C 0.54 14.65 7.75 86.57 0.67 15.33 16 7 O -0.60 -21.31 16.23 -4.05 -0.07 -21.37 16 8 N -0.71 -16.96 5.22 -466.74 -2.43 -19.39 16 9 C 0.13 3.78 5.06 86.38 0.44 4.22 16 10 C -0.08 -2.35 2.19 -10.77 -0.02 -2.37 16 11 C -0.11 -3.54 5.25 30.67 0.16 -3.38 16 12 C 0.14 5.57 6.52 86.36 0.56 6.13 16 13 N -0.61 -30.63 2.99 -699.12 -2.09 -32.71 16 14 C -0.26 -14.39 9.58 84.03 0.81 -13.58 16 15 H 0.06 3.43 7.86 -2.91 -0.02 3.41 16 16 C -0.05 -2.91 5.02 84.86 0.43 -2.48 16 17 N -0.94 -55.60 11.08 21.65 0.24 -55.36 16 18 Si 0.97 45.21 29.57 68.60 2.03 47.24 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 21 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 22 C 0.18 8.59 5.26 86.36 0.45 9.04 16 23 C -0.12 -4.56 5.36 30.67 0.16 -4.40 16 24 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 25 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.09 0.72 5.75 -2.39 -0.01 0.70 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.11 2.27 7.51 -2.91 -0.02 2.24 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.77 6.61 -2.39 -0.02 0.75 16 32 H 0.09 0.75 6.52 -2.39 -0.02 0.73 16 33 H 0.41 7.65 5.71 -92.71 -0.53 7.12 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.08 1.99 7.15 -2.38 -0.02 1.98 16 39 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.05 2.06 7.93 -2.38 -0.02 2.04 16 41 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 42 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 43 H 0.05 2.87 6.10 -2.39 -0.01 2.86 16 44 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 45 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -70.00 353.31 3.39 -66.61 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.43 Total: 13.76 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 5.28 Total: 1.23 kcal Atomic # 7 Polarization: -103.19 SS G_CDS: -4.28 Total: -107.47 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.07 Total: -21.37 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -70.00 3.39 -66.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742186661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.267 kcal (2) G-P(sol) polarization free energy of solvation -70.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds