Wall clock time and date at job start Fri Apr 10 2020 17:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50698 * 109.47384 * 2 1 4 4 C 1.32990 * 119.99656 * 94.99785 * 3 2 1 5 5 C 1.47108 * 119.99591 * 172.76006 * 4 3 2 6 6 O 1.21617 * 120.00049 * 354.72974 * 5 4 3 7 7 N 1.34775 * 120.00119 * 174.72627 * 5 4 3 8 8 C 1.46495 * 119.99994 * 180.02562 * 7 5 4 9 9 C 1.53068 * 109.44367 * 84.79908 * 8 7 5 10 10 C 1.53192 * 109.29528 * 181.23602 * 9 8 7 11 11 N 1.46926 * 108.89219 * 305.57304 * 10 9 8 12 12 C 1.36939 * 120.63291 * 233.51354 * 11 10 9 13 13 H 1.08000 * 119.99907 * 151.68373 * 12 11 10 14 14 C 1.38812 * 120.00257 * 331.69375 * 12 11 10 15 15 N 1.31628 * 119.99489 * 338.62702 * 14 12 11 16 16 Si 1.86794 * 120.00383 * 158.62998 * 14 12 11 17 17 H 1.48496 * 109.46850 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47240 * 119.99528 * 16 14 12 19 19 H 1.48502 * 109.47237 * 239.99593 * 16 14 12 20 20 C 1.46928 * 118.73660 * 53.53895 * 11 10 9 21 21 C 1.53044 * 109.45806 * 205.00054 * 8 7 5 22 22 C 1.50699 * 119.99995 * 275.00212 * 3 2 1 23 23 C 1.52999 * 109.46694 * 265.41173 * 22 3 2 24 24 H 1.08997 * 109.46813 * 59.99603 * 1 2 3 25 25 H 1.08995 * 109.47311 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46695 * 300.00463 * 1 2 3 27 27 H 1.08996 * 109.46695 * 239.99537 * 2 1 3 28 28 H 1.09007 * 109.46585 * 119.99912 * 2 1 3 29 29 H 1.07992 * 120.00557 * 352.75925 * 4 3 2 30 30 H 0.97003 * 119.99669 * 0.02562 * 7 5 4 31 31 H 1.08997 * 109.46388 * 324.97203 * 8 7 5 32 32 H 1.08998 * 109.39543 * 61.35506 * 9 8 7 33 33 H 1.09004 * 109.62012 * 301.24794 * 9 8 7 34 34 H 1.09005 * 109.58911 * 185.72009 * 10 9 8 35 35 H 1.09001 * 109.58978 * 65.43455 * 10 9 8 36 36 H 0.96998 * 119.99607 * 180.02562 * 15 14 12 37 37 H 1.09008 * 109.58369 * 66.18065 * 20 11 10 38 38 H 1.09006 * 109.58563 * 186.45784 * 20 11 10 39 39 H 1.09001 * 109.49973 * 58.67514 * 21 8 7 40 40 H 1.09001 * 109.52546 * 298.59715 * 21 8 7 41 41 H 1.08999 * 109.47368 * 25.40690 * 22 3 2 42 42 H 1.08996 * 109.47047 * 145.40978 * 22 3 2 43 43 H 1.09005 * 109.47215 * 299.99963 * 23 22 3 44 44 H 1.08996 * 109.47533 * 60.00102 * 23 22 3 45 45 H 1.08999 * 109.47115 * 179.97438 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.3488 2.0142 1.1474 5 6 2.9875 3.3393 1.1384 6 8 3.3135 3.8501 0.0840 7 7 3.2113 3.9874 2.2988 8 6 3.8468 5.3073 2.2898 9 6 2.7832 6.3834 2.0582 10 6 3.4554 7.7594 2.0187 11 7 4.2428 7.9396 3.2460 12 6 4.0588 9.0419 4.0374 13 1 4.2544 8.9839 5.0980 14 6 3.6205 10.2337 3.4767 15 7 3.7781 10.4518 2.1882 16 14 2.8074 11.5279 4.5506 17 1 2.7499 11.0425 5.9528 18 1 3.5957 12.7851 4.4934 19 1 1.4298 11.7846 4.0591 20 6 5.2318 6.9150 3.6076 21 6 4.5395 5.5487 3.6330 22 6 2.1764 2.1691 -1.3001 23 6 3.6136 2.0373 -1.8079 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8901 29 1 2.1367 1.5233 2.0856 30 1 2.9515 3.5798 3.1398 31 1 4.5841 5.3499 1.4882 32 1 2.0577 6.3561 2.8713 33 1 2.2760 6.1989 1.1112 34 1 2.6937 8.5366 1.9558 35 1 4.1122 7.8204 1.1509 36 1 3.4722 11.2848 1.7965 37 1 6.0339 6.9047 2.8695 38 1 5.6441 7.1365 4.5921 39 1 5.2808 4.7684 3.8055 40 1 3.7994 5.5306 4.4330 41 1 1.4909 1.7516 -2.0375 42 1 1.9422 3.2217 -1.1413 43 1 4.2993 2.4548 -1.0705 44 1 3.8479 0.9847 -1.9667 45 1 3.7177 2.5782 -2.7485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759185738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:17 Heat of formation + Delta-G solvation = -18.147551 kcal Electronic energy + Delta-G solvation = -22458.378861 eV Core-core repulsion = 19283.069287 eV Total energy + Delta-G solvation = -3175.309573 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.88491 -37.71749 -36.31919 -34.33219 -32.23410 -31.92326 -30.44958 -29.87915 -29.09068 -25.41525 -24.31786 -23.32615 -22.24328 -22.04987 -20.43741 -19.47752 -18.28290 -16.96702 -16.66234 -15.78511 -14.99674 -14.84115 -14.66743 -14.46255 -14.02395 -13.73062 -13.54796 -13.48268 -12.98397 -12.88918 -12.56256 -12.51298 -12.35942 -12.12758 -11.82642 -11.47376 -11.44774 -11.17232 -10.94111 -10.88396 -10.72868 -10.69724 -10.33456 -10.20843 -10.01955 -9.72418 -9.63385 -9.24222 -9.15435 -8.56732 -8.36957 -6.67667 -5.78633 -3.18923 1.39238 3.38038 3.46534 3.47739 3.48846 3.54802 4.51315 4.55520 4.62335 4.94762 5.02571 5.16430 5.27113 5.34037 5.41552 5.42955 5.48430 5.56929 5.59682 5.63793 5.65943 5.67256 5.86732 5.89945 5.96325 6.10825 6.19473 6.27490 6.34975 6.39629 6.46199 6.53960 6.58995 6.66832 6.68062 6.80238 6.95168 7.02077 7.36108 7.64005 7.82516 7.86371 8.45473 8.56292 9.21384 9.85789 10.43419 11.30135 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030326 B = 0.003381 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.092333 B = 8279.941040 C = 8318.263693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.031 4.031 4 C -0.226 4.226 5 C 0.538 3.462 6 O -0.535 6.535 7 N -0.723 5.723 8 C 0.152 3.848 9 C -0.145 4.145 10 C 0.175 3.825 11 N -0.592 5.592 12 C -0.257 4.257 13 H 0.066 0.934 14 C 0.004 3.996 15 N -0.896 5.896 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.289 1.289 20 C 0.149 3.851 21 C -0.139 4.139 22 C -0.095 4.095 23 C -0.133 4.133 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.121 0.879 30 H 0.393 0.607 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.021 0.979 36 H 0.253 0.747 37 H 0.019 0.981 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.038 0.962 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 -20.833 -2.677 21.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 C -0.033 4.033 4 C -0.247 4.247 5 C 0.327 3.673 6 O -0.414 6.414 7 N -0.372 5.372 8 C 0.049 3.951 9 C -0.185 4.185 10 C 0.049 3.951 11 N -0.315 5.315 12 C -0.387 4.387 13 H 0.083 0.917 14 C -0.195 4.195 15 N -0.540 5.540 16 Si 0.728 3.272 17 H -0.202 1.202 18 H -0.218 1.218 19 H -0.215 1.215 20 C 0.021 3.979 21 C -0.179 4.179 22 C -0.132 4.132 23 C -0.190 4.190 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.139 0.861 30 H 0.227 0.773 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.039 0.961 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.116 0.884 43 H 0.090 0.910 44 H 0.057 0.943 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.102 -20.283 -3.503 20.988 hybrid contribution -0.651 0.467 1.023 1.299 sum -4.753 -19.816 -2.480 20.529 Atomic orbital electron populations 1.21724 0.94349 1.01873 1.02517 1.20746 0.96563 0.92876 1.03096 1.22525 0.90757 0.94609 0.95369 1.22454 1.06886 0.96810 0.98578 1.18535 0.79382 0.85370 0.84000 1.90749 1.51768 1.68810 1.30114 1.46241 1.62309 1.20300 1.08350 1.20988 0.95078 0.80498 0.98567 1.22537 0.97940 0.97719 1.00311 1.20682 0.94618 0.91946 0.87858 1.44108 1.39841 1.21329 1.26198 1.19173 1.41688 0.87859 0.89932 0.91663 1.25036 1.01797 0.96726 0.95930 1.70110 1.47789 1.24958 1.11101 0.86301 0.79309 0.81497 0.80124 1.20228 1.21752 1.21547 1.20836 0.91170 0.87200 0.98644 1.22323 0.99712 0.99762 0.96055 1.20841 0.97891 1.01697 0.92789 1.21595 0.96275 0.99764 1.01385 0.92318 0.92270 0.92368 0.90497 0.90878 0.86069 0.77343 0.90118 0.92783 0.92845 0.90000 0.96089 0.93666 0.96263 0.92375 0.92690 0.91925 0.92605 0.88426 0.90990 0.94266 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.90 37.16 0.37 -0.66 16 2 C -0.10 -0.74 6.08 -27.88 -0.17 -0.91 16 3 C -0.03 -0.33 4.62 -101.17 -0.47 -0.79 16 4 C -0.23 -2.59 9.60 -37.80 -0.36 -2.95 16 5 C 0.54 8.01 7.55 -12.66 -0.10 7.91 16 6 O -0.53 -9.56 10.74 5.26 0.06 -9.50 16 7 N -0.72 -10.37 5.07 -54.93 -0.28 -10.64 16 8 C 0.15 2.68 2.41 -67.88 -0.16 2.52 16 9 C -0.14 -2.92 5.66 -26.60 -0.15 -3.07 16 10 C 0.18 4.31 5.33 -3.71 -0.02 4.29 16 11 N -0.59 -14.94 2.99 -172.31 -0.52 -15.45 16 12 C -0.26 -7.09 9.55 -15.06 -0.14 -7.23 16 13 H 0.07 1.76 7.92 -52.49 -0.42 1.35 16 14 C 0.00 0.12 4.79 -17.43 -0.08 0.04 16 15 N -0.90 -26.44 11.51 55.49 0.64 -25.80 16 16 Si 0.90 21.75 29.60 -169.99 -5.03 16.72 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 21 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 22 C -0.10 -1.14 5.35 -27.88 -0.15 -1.29 16 23 C -0.13 -1.62 9.32 37.16 0.35 -1.28 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.50 8.04 -51.92 -0.42 0.08 16 29 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.39 4.53 8.59 -40.82 -0.35 4.18 16 31 H 0.08 1.60 7.58 -51.93 -0.39 1.20 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.08 2.24 6.23 -51.93 -0.32 1.92 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 42 H 0.10 1.44 6.04 -51.93 -0.31 1.13 16 43 H 0.07 1.05 6.20 -51.93 -0.32 0.73 16 44 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 354.14 15.07 5.34 5.34 Total: -1.00 -30.90 354.14 -9.06 -39.96 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -8.00 Total: 2.22 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.26 Total: -2.83 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.15 Total: -51.90 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.06 Total: -9.50 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.90 -9.06 -39.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759185738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.812 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds