Wall clock time and date at job start Fri Apr 10 2020 17:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50698 * 109.47384 * 2 1 4 4 C 1.32990 * 119.99656 * 94.99785 * 3 2 1 5 5 C 1.47108 * 119.99591 * 172.76006 * 4 3 2 6 6 O 1.21617 * 120.00049 * 354.72974 * 5 4 3 7 7 N 1.34775 * 120.00119 * 174.72627 * 5 4 3 8 8 C 1.46495 * 119.99994 * 180.02562 * 7 5 4 9 9 C 1.53068 * 109.44367 * 84.79908 * 8 7 5 10 10 C 1.53192 * 109.29528 * 181.23602 * 9 8 7 11 11 N 1.46926 * 108.89219 * 305.57304 * 10 9 8 12 12 C 1.36939 * 120.63291 * 233.51354 * 11 10 9 13 13 H 1.08000 * 119.99907 * 151.68373 * 12 11 10 14 14 C 1.38812 * 120.00257 * 331.69375 * 12 11 10 15 15 N 1.31628 * 119.99489 * 338.62702 * 14 12 11 16 16 Si 1.86794 * 120.00383 * 158.62998 * 14 12 11 17 17 H 1.48496 * 109.46850 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47240 * 119.99528 * 16 14 12 19 19 H 1.48502 * 109.47237 * 239.99593 * 16 14 12 20 20 C 1.46928 * 118.73660 * 53.53895 * 11 10 9 21 21 C 1.53044 * 109.45806 * 205.00054 * 8 7 5 22 22 C 1.50699 * 119.99995 * 275.00212 * 3 2 1 23 23 C 1.52999 * 109.46694 * 265.41173 * 22 3 2 24 24 H 1.08997 * 109.46813 * 59.99603 * 1 2 3 25 25 H 1.08995 * 109.47311 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46695 * 300.00463 * 1 2 3 27 27 H 1.08996 * 109.46695 * 239.99537 * 2 1 3 28 28 H 1.09007 * 109.46585 * 119.99912 * 2 1 3 29 29 H 1.07992 * 120.00557 * 352.75925 * 4 3 2 30 30 H 0.97003 * 119.99669 * 0.02562 * 7 5 4 31 31 H 1.08997 * 109.46388 * 324.97203 * 8 7 5 32 32 H 1.08998 * 109.39543 * 61.35506 * 9 8 7 33 33 H 1.09004 * 109.62012 * 301.24794 * 9 8 7 34 34 H 1.09005 * 109.58911 * 185.72009 * 10 9 8 35 35 H 1.09001 * 109.58978 * 65.43455 * 10 9 8 36 36 H 0.96998 * 119.99607 * 180.02562 * 15 14 12 37 37 H 1.09008 * 109.58369 * 66.18065 * 20 11 10 38 38 H 1.09006 * 109.58563 * 186.45784 * 20 11 10 39 39 H 1.09001 * 109.49973 * 58.67514 * 21 8 7 40 40 H 1.09001 * 109.52546 * 298.59715 * 21 8 7 41 41 H 1.08999 * 109.47368 * 25.40690 * 22 3 2 42 42 H 1.08996 * 109.47047 * 145.40978 * 22 3 2 43 43 H 1.09005 * 109.47215 * 299.99963 * 23 22 3 44 44 H 1.08996 * 109.47533 * 60.00102 * 23 22 3 45 45 H 1.08999 * 109.47115 * 179.97438 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.3488 2.0142 1.1474 5 6 2.9875 3.3393 1.1384 6 8 3.3135 3.8501 0.0840 7 7 3.2113 3.9874 2.2988 8 6 3.8468 5.3073 2.2898 9 6 2.7832 6.3834 2.0582 10 6 3.4554 7.7594 2.0187 11 7 4.2428 7.9396 3.2460 12 6 4.0588 9.0419 4.0374 13 1 4.2544 8.9839 5.0980 14 6 3.6205 10.2337 3.4767 15 7 3.7781 10.4518 2.1882 16 14 2.8074 11.5279 4.5506 17 1 2.7499 11.0425 5.9528 18 1 3.5957 12.7851 4.4934 19 1 1.4298 11.7846 4.0591 20 6 5.2318 6.9150 3.6076 21 6 4.5395 5.5487 3.6330 22 6 2.1764 2.1691 -1.3001 23 6 3.6136 2.0373 -1.8079 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8901 29 1 2.1367 1.5233 2.0856 30 1 2.9515 3.5798 3.1398 31 1 4.5841 5.3499 1.4882 32 1 2.0577 6.3561 2.8713 33 1 2.2760 6.1989 1.1112 34 1 2.6937 8.5366 1.9558 35 1 4.1122 7.8204 1.1509 36 1 3.4722 11.2848 1.7965 37 1 6.0339 6.9047 2.8695 38 1 5.6441 7.1365 4.5921 39 1 5.2808 4.7684 3.8055 40 1 3.7994 5.5306 4.4330 41 1 1.4909 1.7516 -2.0375 42 1 1.9422 3.2217 -1.1413 43 1 4.2993 2.4548 -1.0705 44 1 3.8479 0.9847 -1.9667 45 1 3.7177 2.5782 -2.7485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759185738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:16 Heat of formation + Delta-G solvation = -36.496924 kcal Electronic energy + Delta-G solvation = -22459.174549 eV Core-core repulsion = 19283.069287 eV Total energy + Delta-G solvation = -3176.105262 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.08852 -39.21630 -37.39166 -35.87410 -33.95806 -32.75561 -31.96206 -31.51001 -30.39237 -27.07202 -25.49551 -24.15118 -23.94060 -23.63403 -21.65850 -21.10034 -19.40574 -18.67381 -17.90819 -17.14677 -16.64350 -15.97855 -15.94572 -15.59191 -15.40044 -15.33434 -14.88065 -14.73258 -14.46000 -14.16943 -14.03736 -13.64901 -13.41697 -13.18436 -13.09283 -12.93309 -12.65630 -12.59744 -12.56103 -12.14669 -12.13960 -12.03696 -11.89088 -11.74048 -11.59947 -11.45882 -11.33939 -10.58776 -10.42941 -10.13024 -9.74559 -8.74268 -7.90547 -5.34490 0.47348 1.45647 1.47879 1.58950 2.33776 2.41524 2.50657 3.24641 3.63295 3.77318 3.82501 3.89442 4.08267 4.24627 4.32563 4.36364 4.44344 4.45412 4.47289 4.64608 4.64939 4.70719 4.78738 4.80985 4.86549 4.98485 5.03583 5.05783 5.07255 5.11506 5.13072 5.27168 5.29390 5.38177 5.41113 5.44630 5.57283 5.61792 5.66318 5.69842 5.73672 6.36096 6.75777 7.10778 7.44083 7.82149 8.36029 9.16951 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030326 B = 0.003381 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.092333 B = 8279.941040 C = 8318.263693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.021 4.021 4 C -0.235 4.235 5 C 0.529 3.471 6 O -0.572 6.572 7 N -0.712 5.712 8 C 0.165 3.835 9 C -0.128 4.128 10 C 0.185 3.815 11 N -0.609 5.609 12 C -0.265 4.265 13 H 0.073 0.927 14 C -0.052 4.052 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.262 1.262 18 H -0.293 1.293 19 H -0.292 1.292 20 C 0.141 3.859 21 C -0.121 4.121 22 C -0.098 4.098 23 C -0.129 4.129 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.154 0.846 30 H 0.412 0.588 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.047 0.953 35 H -0.011 1.011 36 H 0.249 0.751 37 H 0.010 0.990 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.061 0.939 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.164 -23.802 -0.946 24.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.023 4.023 4 C -0.256 4.256 5 C 0.321 3.679 6 O -0.454 6.454 7 N -0.363 5.363 8 C 0.059 3.941 9 C -0.168 4.168 10 C 0.059 3.941 11 N -0.332 5.332 12 C -0.395 4.395 13 H 0.090 0.910 14 C -0.248 4.248 15 N -0.581 5.581 16 Si 0.794 3.206 17 H -0.186 1.186 18 H -0.220 1.220 19 H -0.219 1.219 20 C 0.016 3.984 21 C -0.160 4.160 22 C -0.135 4.135 23 C -0.186 4.186 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.172 0.828 30 H 0.248 0.752 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.007 0.993 36 H 0.058 0.942 37 H 0.028 0.972 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.949 -23.306 -1.727 23.888 hybrid contribution -0.339 1.363 0.394 1.459 sum -5.287 -21.943 -1.333 22.610 Atomic orbital electron populations 1.21729 0.93683 1.02892 1.02093 1.20804 0.96942 0.90575 1.04496 1.22785 0.89396 0.95939 0.94222 1.22486 1.07601 0.95075 1.00392 1.19217 0.78902 0.86493 0.83325 1.90757 1.53205 1.69949 1.31470 1.45965 1.62062 1.18828 1.09400 1.20574 0.93696 0.81429 0.98362 1.22279 0.98347 0.96108 1.00077 1.20397 0.93292 0.93505 0.86943 1.44363 1.41133 1.21882 1.25862 1.19562 1.40841 0.88511 0.90553 0.90959 1.25864 1.02752 0.99043 0.97127 1.70264 1.49320 1.25467 1.13015 0.85227 0.77668 0.78599 0.79061 1.18564 1.21985 1.21863 1.21040 0.90563 0.88238 0.98604 1.22118 1.00388 0.97993 0.95545 1.20799 0.98059 1.00188 0.94475 1.21526 0.95903 1.00874 1.00300 0.92947 0.90540 0.92672 0.89432 0.89185 0.82823 0.75162 0.92695 0.92186 0.93673 0.93414 0.99300 0.94162 0.97233 0.91458 0.89191 0.90715 0.90655 0.91771 0.93698 0.91982 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.90 71.99 0.71 -0.86 16 2 C -0.09 -1.07 6.08 29.85 0.18 -0.89 16 3 C -0.02 -0.41 4.62 -17.62 -0.08 -0.49 16 4 C -0.23 -4.81 9.60 23.43 0.22 -4.59 16 5 C 0.53 15.32 7.55 86.57 0.65 15.97 16 6 O -0.57 -20.99 10.74 -4.09 -0.04 -21.03 16 7 N -0.71 -19.20 5.07 -445.96 -2.26 -21.46 16 8 C 0.16 5.70 2.41 45.03 0.11 5.81 16 9 C -0.13 -5.26 5.66 30.68 0.17 -5.08 16 10 C 0.19 9.53 5.33 86.36 0.46 9.99 16 11 N -0.61 -31.24 2.99 -699.07 -2.09 -33.33 16 12 C -0.26 -14.70 9.55 84.03 0.80 -13.89 16 13 H 0.07 3.85 7.92 -2.91 -0.02 3.82 16 14 C -0.05 -2.98 4.79 84.86 0.41 -2.57 16 15 N -0.94 -57.32 11.51 21.65 0.25 -57.07 16 16 Si 0.97 45.35 29.60 68.60 2.03 47.38 16 17 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 19 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 20 C 0.14 5.82 6.52 86.36 0.56 6.38 16 21 C -0.12 -3.82 5.55 30.67 0.17 -3.65 16 22 C -0.10 -2.28 5.35 29.85 0.16 -2.12 16 23 C -0.13 -3.10 9.32 71.98 0.67 -2.43 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.09 0.82 8.04 -2.38 -0.02 0.80 16 29 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 30 H 0.41 8.16 8.59 -92.71 -0.80 7.36 16 31 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 32 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.05 2.75 6.23 -2.38 -0.01 2.74 16 35 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 36 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 37 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 38 H 0.07 2.62 7.93 -2.38 -0.02 2.60 16 39 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.07 1.42 8.10 -2.39 -0.02 1.40 16 42 H 0.06 1.95 6.04 -2.39 -0.01 1.94 16 43 H 0.04 1.33 6.20 -2.38 -0.01 1.31 16 44 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -70.29 354.14 3.25 -67.04 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.15 Total: 16.88 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 5.21 Total: 1.59 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -4.10 Total: -111.86 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.04 Total: -21.03 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -70.29 3.25 -67.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759185738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.544 kcal (2) G-P(sol) polarization free energy of solvation -70.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds