Wall clock time and date at job start Fri Apr 10 2020 17:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47298 * 2 1 4 4 C 1.50703 * 119.99804 * 275.00223 * 3 2 1 5 5 C 1.32993 * 119.99950 * 94.99922 * 3 2 1 6 6 C 1.50693 * 120.00059 * 6.10929 * 5 3 2 7 7 C 1.47098 * 119.99841 * 186.10870 * 5 3 2 8 8 O 1.21622 * 120.00302 * 5.02548 * 7 5 3 9 9 N 1.34780 * 120.00186 * 185.02197 * 7 5 3 10 10 C 1.46496 * 120.00263 * 180.02562 * 9 7 5 11 11 C 1.53047 * 109.45758 * 275.02850 * 10 9 7 12 12 C 1.53191 * 109.31337 * 178.60007 * 11 10 9 13 13 N 1.46925 * 108.76524 * 54.65284 * 12 11 10 14 14 C 1.36938 * 120.63164 * 126.36184 * 13 12 11 15 15 H 1.08000 * 119.99743 * 323.28367 * 14 13 12 16 16 C 1.38814 * 120.00065 * 143.28704 * 14 13 12 17 17 N 1.31613 * 119.99780 * 348.10919 * 16 14 13 18 18 Si 1.86802 * 119.99906 * 168.10819 * 16 14 13 19 19 H 1.48501 * 109.47137 * 89.99902 * 18 16 14 20 20 H 1.48496 * 109.47107 * 209.99967 * 18 16 14 21 21 H 1.48503 * 109.47220 * 329.99705 * 18 16 14 22 22 C 1.46929 * 118.74143 * 306.38510 * 13 12 11 23 23 C 1.53036 * 109.46510 * 154.97448 * 10 9 7 24 24 H 1.08997 * 109.46935 * 299.99829 * 1 2 3 25 25 H 1.08999 * 109.47290 * 60.00274 * 1 2 3 26 26 H 1.09002 * 109.46804 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47541 * 120.00211 * 2 1 3 28 28 H 1.09006 * 109.47040 * 239.99953 * 2 1 3 29 29 H 1.08996 * 109.47485 * 355.07239 * 4 3 2 30 30 H 1.09002 * 109.47128 * 115.07073 * 4 3 2 31 31 H 1.08997 * 109.46740 * 235.06776 * 4 3 2 32 32 H 1.09004 * 109.47457 * 90.00211 * 6 5 3 33 33 H 1.09000 * 109.47084 * 209.99614 * 6 5 3 34 34 H 1.08999 * 109.47586 * 329.99932 * 6 5 3 35 35 H 0.96997 * 119.99929 * 0.02562 * 9 7 5 36 36 H 1.09002 * 109.46054 * 34.99239 * 10 9 7 37 37 H 1.08994 * 109.49526 * 298.56406 * 11 10 9 38 38 H 1.08999 * 109.49852 * 58.65957 * 11 10 9 39 39 H 1.09001 * 109.59745 * 294.86759 * 12 11 10 40 40 H 1.08995 * 109.70433 * 174.50126 * 12 11 10 41 41 H 0.97005 * 119.99681 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.58204 * 293.82204 * 22 13 12 43 43 H 1.08998 * 109.70357 * 173.45859 * 22 13 12 44 44 H 1.08997 * 109.49293 * 301.33635 * 23 10 9 45 45 H 1.09004 * 109.49880 * 61.42506 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1763 2.1691 -1.3002 5 6 2.3487 2.0143 1.1474 6 6 2.3370 1.2260 2.4317 7 6 2.7099 3.4401 1.1628 8 8 2.6313 4.0985 0.1432 9 7 3.1280 4.0171 2.3068 10 6 3.4872 5.4373 2.3223 11 6 4.9433 5.5997 1.8796 12 6 5.3048 7.0882 1.8633 13 7 5.0083 7.6611 3.1834 14 6 5.9685 8.3471 3.8780 15 1 6.9983 8.0243 3.8376 16 6 5.6182 9.4574 4.6340 17 7 4.4226 9.9917 4.5035 18 14 6.8439 10.1928 5.8367 19 1 7.6544 11.2281 5.1464 20 1 6.1132 10.8117 6.9717 21 1 7.7383 9.1234 6.3481 22 6 3.6619 7.4835 3.7444 23 6 3.3187 5.9905 3.7391 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.9562 1.4992 -2.1313 30 1 1.4803 3.0079 -1.3156 31 1 3.1963 2.5416 -1.3940 32 1 3.3210 0.7875 2.5979 33 1 2.0892 1.8876 3.2618 34 1 1.5924 0.4328 2.3645 35 1 3.1910 3.4921 3.1199 36 1 2.8370 5.9838 1.6392 37 1 5.5961 5.0741 2.5764 38 1 5.0680 5.1842 0.8796 39 1 4.7152 7.5994 1.1023 40 1 6.3659 7.2063 1.6439 41 1 4.1779 10.7678 5.0316 42 1 2.9384 8.0269 3.1367 43 1 3.6371 7.8605 4.7667 44 1 2.2870 5.8533 4.0628 45 1 3.9870 5.4611 4.4183 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779922869.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:25 Heat of formation + Delta-G solvation = -22.611155 kcal Electronic energy + Delta-G solvation = -22517.091758 eV Core-core repulsion = 19341.588628 eV Total energy + Delta-G solvation = -3175.503130 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -39.97225 -37.69944 -36.44033 -34.41108 -32.45798 -31.50428 -30.21677 -29.85773 -29.12339 -25.37000 -24.89358 -24.11369 -22.28089 -22.01412 -20.43282 -19.48597 -18.13296 -16.73766 -16.16714 -16.00229 -15.10272 -14.96215 -14.62161 -14.26420 -13.83681 -13.71270 -13.53169 -13.19940 -13.06954 -12.86856 -12.71867 -12.61592 -12.37965 -12.26577 -12.06433 -11.62703 -11.53315 -11.39614 -11.11904 -11.03444 -10.81493 -10.71547 -10.44258 -10.24189 -10.04947 -9.82473 -9.58168 -9.25369 -8.92584 -8.53856 -8.43834 -6.53225 -5.79162 -3.30826 1.37216 3.36774 3.43624 3.43901 3.45753 3.51824 4.49184 4.56721 4.64266 4.88192 4.93947 5.04433 5.27864 5.31536 5.37766 5.42812 5.45867 5.54546 5.56154 5.60035 5.64684 5.73126 5.77810 5.85082 5.92111 5.93354 6.09995 6.12221 6.32698 6.38190 6.49497 6.51256 6.57317 6.62819 6.65534 6.85804 7.00245 7.05125 7.30174 7.57203 7.81494 7.86282 8.51420 8.52946 9.23257 9.83346 10.46319 11.29377 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.043504 B = 0.003274 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.467916 B = 8549.965011 C = 8729.248525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.043 4.043 4 C -0.112 4.112 5 C -0.198 4.198 6 C -0.117 4.117 7 C 0.548 3.452 8 O -0.542 6.542 9 N -0.722 5.722 10 C 0.152 3.848 11 C -0.138 4.138 12 C 0.148 3.852 13 N -0.591 5.591 14 C -0.259 4.259 15 H 0.061 0.939 16 C 0.010 3.990 17 N -0.900 5.900 18 Si 0.902 3.098 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.278 1.278 22 C 0.180 3.820 23 C -0.147 4.147 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.394 0.606 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.020 0.980 40 H 0.055 0.945 41 H 0.254 0.746 42 H 0.022 0.978 43 H 0.079 0.921 44 H 0.053 0.947 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.589 -20.063 -5.423 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.135 4.135 3 C -0.045 4.045 4 C -0.168 4.168 5 C -0.201 4.201 6 C -0.173 4.173 7 C 0.336 3.664 8 O -0.422 6.422 9 N -0.372 5.372 10 C 0.048 3.952 11 C -0.178 4.178 12 C 0.021 3.979 13 N -0.314 5.314 14 C -0.389 4.389 15 H 0.079 0.921 16 C -0.190 4.190 17 N -0.543 5.543 18 Si 0.732 3.268 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.204 1.204 22 C 0.053 3.947 23 C -0.187 4.187 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.228 0.772 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.040 0.960 43 H 0.098 0.902 44 H 0.071 0.929 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.708 -19.404 -6.040 21.400 hybrid contribution 0.629 0.209 1.129 1.309 sum -6.079 -19.195 -4.911 20.725 Atomic orbital electron populations 1.21688 0.94250 1.01791 1.02550 1.20793 0.96526 0.93010 1.03172 1.22326 0.91996 0.95222 0.94973 1.20961 1.03855 0.99382 0.92585 1.21281 1.08485 0.94083 0.96210 1.20816 1.02440 0.99594 0.94474 1.18335 0.77199 0.87228 0.83590 1.90767 1.53954 1.65007 1.32447 1.46290 1.67093 1.12280 1.11502 1.21000 0.96381 0.79244 0.98551 1.22366 0.95496 0.99996 0.99953 1.20891 0.98536 0.89932 0.88529 1.43972 1.09970 1.62669 1.14776 1.19090 0.89933 1.05421 1.24428 0.92141 1.25300 0.96848 0.95724 1.01086 1.69995 1.19987 1.22820 1.41491 0.86317 0.80672 0.79120 0.80730 1.21247 1.21564 1.20386 1.20623 0.86173 0.88022 0.99860 1.22534 0.99981 1.01792 0.94381 0.92383 0.92316 0.92232 0.90468 0.90776 0.93270 0.89668 0.90512 0.91188 0.91764 0.91053 0.77152 0.90094 0.92495 0.92822 0.96249 0.92610 0.93564 0.95954 0.90235 0.92853 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.10 -0.76 5.44 -27.88 -0.15 -0.91 16 3 C -0.04 -0.47 5.36 -101.17 -0.54 -1.01 16 4 C -0.11 -1.32 8.34 36.01 0.30 -1.02 16 5 C -0.20 -2.34 5.99 -102.85 -0.62 -2.96 16 6 C -0.12 -1.01 8.79 36.00 0.32 -0.70 16 7 C 0.55 8.45 7.64 -12.66 -0.10 8.36 16 8 O -0.54 -10.05 12.86 5.26 0.07 -9.99 16 9 N -0.72 -10.75 5.01 -54.95 -0.28 -11.03 16 10 C 0.15 2.74 2.42 -67.89 -0.16 2.57 16 11 C -0.14 -2.61 5.65 -26.61 -0.15 -2.77 16 12 C 0.15 3.28 6.52 -3.71 -0.02 3.26 16 13 N -0.59 -15.02 2.95 -172.32 -0.51 -15.53 16 14 C -0.26 -7.16 9.50 -15.06 -0.14 -7.30 16 15 H 0.06 1.65 7.86 -52.49 -0.41 1.24 16 16 C 0.01 0.28 4.99 -17.43 -0.09 0.19 16 17 N -0.90 -26.23 11.55 55.49 0.64 -25.59 16 18 Si 0.90 21.62 29.57 -169.99 -5.03 16.60 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 C 0.18 4.27 5.23 -3.71 -0.02 4.25 16 23 C -0.15 -2.74 5.55 -26.61 -0.15 -2.89 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.52 6.03 -51.93 -0.31 0.21 16 28 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 29 H 0.05 0.46 7.98 -51.93 -0.41 0.05 16 30 H 0.08 1.16 7.06 -51.93 -0.37 0.79 16 31 H 0.08 1.03 7.44 -51.93 -0.39 0.64 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.54 6.91 -51.93 -0.36 0.18 16 34 H 0.07 0.51 6.20 -51.93 -0.32 0.19 16 35 H 0.39 4.87 6.83 -40.82 -0.28 4.60 16 36 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.08 2.07 6.58 -51.93 -0.34 1.73 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -31.05 350.81 -8.76 -39.80 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.78 Total: 2.03 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.16 Total: -1.57 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.14 Total: -52.15 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.07 Total: -9.99 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.05 -8.76 -39.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779922869.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.190 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds