Wall clock time and date at job start Fri Apr 10 2020 17:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47204 * 2 1 4 4 C 1.50703 * 109.47055 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00180 * 275.00249 * 4 3 2 6 6 C 1.32999 * 120.00085 * 94.99710 * 4 3 2 7 7 C 1.47103 * 119.99935 * 172.00209 * 6 4 3 8 8 O 1.21615 * 119.99952 * 353.89961 * 7 6 4 9 9 N 1.34780 * 119.99725 * 173.89871 * 7 6 4 10 10 C 1.47072 * 120.87734 * 174.74535 * 9 7 6 11 11 C 1.53245 * 108.52035 * 231.15947 * 10 9 7 12 12 N 1.46897 * 109.34221 * 306.17288 * 11 10 9 13 13 C 1.46898 * 110.99900 * 187.25147 * 12 11 10 14 14 C 1.50694 * 109.47198 * 65.69915 * 13 12 11 15 15 H 1.08005 * 120.00143 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00293 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00420 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99674 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47104 * 89.99344 * 18 16 14 20 20 H 1.48496 * 109.47047 * 209.99802 * 18 16 14 21 21 H 1.48503 * 109.46859 * 329.99323 * 18 16 14 22 22 C 1.46906 * 111.26617 * 63.10317 * 12 11 10 23 23 C 1.47085 * 120.88045 * 354.72461 * 9 7 6 24 24 H 1.08991 * 109.47082 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47099 * 300.00324 * 1 2 3 26 26 H 1.09004 * 109.46701 * 59.99623 * 1 2 3 27 27 H 1.09000 * 109.47099 * 239.99676 * 2 1 3 28 28 H 1.09000 * 109.46771 * 119.99616 * 2 1 3 29 29 H 1.09000 * 109.47357 * 59.99834 * 3 2 1 30 30 H 1.08996 * 109.47297 * 299.99827 * 3 2 1 31 31 H 1.09004 * 109.46550 * 263.61626 * 5 4 3 32 32 H 1.08997 * 109.47085 * 23.60718 * 5 4 3 33 33 H 1.08995 * 109.47424 * 143.61592 * 5 4 3 34 34 H 1.07992 * 119.99791 * 352.00914 * 6 4 3 35 35 H 1.09000 * 109.63461 * 350.87402 * 10 9 7 36 36 H 1.09002 * 109.62790 * 111.45626 * 10 9 7 37 37 H 1.08997 * 109.48978 * 66.13635 * 11 10 9 38 38 H 1.09004 * 109.49107 * 186.21407 * 11 10 9 39 39 H 1.08999 * 109.46645 * 185.70493 * 13 12 11 40 40 H 1.09006 * 109.46846 * 305.69655 * 13 12 11 41 41 H 0.96998 * 120.00127 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.49129 * 176.93581 * 22 12 11 43 43 H 1.08998 * 109.49165 * 56.85548 * 22 12 11 44 44 H 1.08995 * 109.62530 * 248.54794 * 23 9 7 45 45 H 1.09001 * 109.62526 * 9.12575 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3001 1.3288 1.3011 6 6 4.2126 1.5426 -1.1465 7 6 5.6729 1.7197 -1.1366 8 8 6.2581 1.8857 -0.0836 9 7 6.3622 1.6979 -2.2946 10 6 7.8041 1.9864 -2.3203 11 6 8.0674 3.0569 -3.3847 12 7 7.4987 2.6189 -4.6664 13 6 7.8774 3.5346 -5.7508 14 6 9.3668 3.4661 -5.9690 15 1 9.9718 2.8084 -5.3625 16 6 9.9574 4.2431 -6.9429 17 7 11.2573 4.1837 -7.1330 18 14 8.9112 5.3813 -7.9915 19 1 8.8182 6.7111 -7.3371 20 1 9.5335 5.5313 -9.3314 21 1 7.5501 4.8061 -8.1395 22 6 6.0388 2.4786 -4.5813 23 6 5.6924 1.3845 -3.5661 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 4.5805 2.3239 1.6466 32 1 3.6659 0.8505 2.0475 33 1 5.1982 0.7301 1.1498 34 1 3.6809 1.4940 -2.0852 35 1 8.1214 2.3544 -1.3445 36 1 8.3546 1.0792 -2.5693 37 1 7.6010 3.9941 -3.0812 38 1 9.1419 3.2038 -3.4948 39 1 7.3622 3.2457 -6.6668 40 1 7.5960 4.5527 -5.4814 41 1 11.6727 4.7301 -7.8185 42 1 5.6421 2.2062 -5.5593 43 1 5.6007 3.4239 -4.2611 44 1 6.0399 0.4194 -3.9348 45 1 4.6134 1.3545 -3.4138 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827485337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:55 Heat of formation + Delta-G solvation = -18.896915 kcal Electronic energy + Delta-G solvation = -22128.741616 eV Core-core repulsion = 18953.399548 eV Total energy + Delta-G solvation = -3175.342068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.08848 -37.93660 -36.59741 -34.47743 -33.07075 -32.37805 -30.91328 -29.07722 -27.61833 -27.29014 -25.55698 -23.44533 -22.37270 -21.75244 -20.81696 -19.29826 -18.00705 -17.29724 -16.79153 -15.79406 -15.40168 -15.00361 -14.72136 -14.56311 -14.45077 -14.14820 -13.81896 -13.59751 -13.48729 -13.28509 -12.92845 -12.62192 -12.40483 -12.24892 -12.07318 -11.73555 -11.61781 -11.56588 -11.45374 -11.18207 -10.98833 -10.90395 -10.77712 -10.64578 -10.28729 -9.86543 -9.46516 -9.29704 -9.20795 -8.61872 -8.38825 -7.47642 -6.09043 -4.07019 1.31208 3.19297 3.25331 3.33193 3.34132 3.35701 4.37210 4.38244 4.53504 4.59824 4.71653 4.83449 4.88258 5.09717 5.21009 5.23509 5.27534 5.36200 5.39302 5.42567 5.46548 5.52163 5.61787 5.68521 5.74947 5.76866 5.78039 5.90930 5.94026 5.97268 6.01656 6.10808 6.36983 6.42260 6.43003 6.49251 6.69580 6.81461 6.93089 7.53126 7.60183 7.82329 7.94896 8.35127 8.59901 8.98694 9.52197 11.03896 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031032 B = 0.003246 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.087990 B = 8625.067801 C = 9203.107905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.092 4.092 4 C -0.034 4.034 5 C -0.120 4.120 6 C -0.230 4.230 7 C 0.544 3.456 8 O -0.549 6.549 9 N -0.606 5.606 10 C 0.116 3.884 11 C 0.050 3.950 12 N -0.526 5.526 13 C 0.163 3.837 14 C -0.512 4.512 15 H 0.082 0.918 16 C 0.069 3.931 17 N -0.898 5.898 18 Si 0.876 3.124 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.267 1.267 22 C 0.036 3.964 23 C 0.113 3.887 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.024 0.976 38 H 0.102 0.898 39 H 0.030 0.970 40 H -0.016 1.016 41 H 0.264 0.736 42 H 0.081 0.919 43 H 0.027 0.973 44 H 0.076 0.924 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.218 -6.970 12.763 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.130 4.130 4 C -0.035 4.035 5 C -0.176 4.176 6 C -0.251 4.251 7 C 0.336 3.664 8 O -0.430 6.430 9 N -0.339 5.339 10 C -0.006 4.006 11 C -0.079 4.079 12 N -0.251 5.251 13 C 0.037 3.963 14 C -0.550 4.550 15 H 0.100 0.900 16 C -0.133 4.133 17 N -0.537 5.537 18 Si 0.703 3.297 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.192 1.192 22 C -0.093 4.093 23 C -0.011 4.011 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.145 0.855 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.042 0.958 38 H 0.121 0.879 39 H 0.048 0.952 40 H 0.001 0.999 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.045 0.955 44 H 0.094 0.906 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.543 -7.265 13.065 24.605 hybrid contribution -0.808 1.540 -0.805 1.916 sum -20.351 -5.725 12.260 24.438 Atomic orbital electron populations 1.21790 0.95518 1.01810 1.01920 1.21491 0.95845 0.95715 1.02659 1.20860 0.90934 0.97835 1.03330 1.22517 0.95296 0.90260 0.95472 1.21086 0.99978 1.03335 0.93230 1.22514 0.93678 1.10086 0.98786 1.18516 0.87677 0.77025 0.83200 1.90729 1.71298 1.50858 1.30141 1.48121 1.10026 1.68747 1.06956 1.21822 0.79459 0.99408 0.99891 1.22394 1.02470 0.94417 0.88572 1.61915 1.06813 1.51455 1.04918 1.20181 0.98027 0.88834 0.89260 1.21014 0.90071 1.24743 1.19165 0.90041 1.24899 0.94810 0.96678 0.96900 1.69886 1.09421 1.40749 1.33671 0.86855 0.81029 0.81556 0.80231 1.20374 1.21112 1.19231 1.22462 0.91138 0.96899 0.98829 1.21936 0.96872 0.99150 0.83098 0.92579 0.92683 0.92595 0.91618 0.91660 0.90395 0.90710 0.90397 0.92942 0.89445 0.85513 0.89327 0.90863 0.95761 0.87949 0.95209 0.99868 0.92600 0.90073 0.95455 0.90555 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 3 C -0.09 -0.69 5.36 -27.88 -0.15 -0.84 16 4 C -0.03 -0.34 5.36 -101.16 -0.54 -0.89 16 5 C -0.12 -1.31 8.45 36.01 0.30 -1.01 16 6 C -0.23 -2.69 8.91 -37.80 -0.34 -3.02 16 7 C 0.54 8.25 7.49 -12.66 -0.09 8.16 16 8 O -0.55 -9.64 12.79 5.26 0.07 -9.57 16 9 N -0.61 -9.27 3.01 -173.86 -0.52 -9.80 16 10 C 0.12 1.95 6.58 -3.60 -0.02 1.92 16 11 C 0.05 0.97 5.46 -3.70 -0.02 0.95 16 12 N -0.53 -10.67 4.62 -235.76 -1.09 -11.76 16 13 C 0.16 3.87 3.79 -4.98 -0.02 3.85 16 14 C -0.51 -14.25 8.96 -34.44 -0.31 -14.56 16 15 H 0.08 2.46 7.37 -52.48 -0.39 2.07 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 18 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 22 C 0.04 0.58 5.62 -3.70 -0.02 0.56 16 23 C 0.11 1.50 6.52 -3.60 -0.02 1.47 16 24 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.52 8.04 -51.93 -0.42 0.11 16 31 H 0.08 0.92 7.98 -51.93 -0.41 0.51 16 32 H 0.05 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.09 1.15 6.27 -51.93 -0.33 0.82 16 34 H 0.13 1.22 5.93 -52.49 -0.31 0.91 16 35 H 0.09 1.49 7.10 -51.93 -0.37 1.12 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.10 2.17 6.67 -51.93 -0.35 1.82 16 39 H 0.03 0.71 7.03 -51.93 -0.36 0.34 16 40 H -0.02 -0.39 7.55 -51.93 -0.39 -0.79 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.08 1.20 7.99 -51.93 -0.41 0.79 16 43 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.08 0.85 5.38 -51.93 -0.28 0.57 16 LS Contribution 351.50 15.07 5.30 5.30 Total: -1.00 -31.48 351.50 -9.10 -40.58 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -7.84 Total: -1.89 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.12 Total: -2.97 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.84 Total: -48.00 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.07 Total: -9.57 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.48 -9.10 -40.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827485337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.680 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds