Wall clock time and date at job start Fri Apr 10 2020 17:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47204 * 2 1 4 4 C 1.50703 * 109.47055 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00180 * 275.00249 * 4 3 2 6 6 C 1.32999 * 120.00085 * 94.99710 * 4 3 2 7 7 C 1.47103 * 119.99935 * 172.00209 * 6 4 3 8 8 O 1.21615 * 119.99952 * 353.89961 * 7 6 4 9 9 N 1.34780 * 119.99725 * 173.89871 * 7 6 4 10 10 C 1.47072 * 120.87734 * 174.74535 * 9 7 6 11 11 C 1.53245 * 108.52035 * 231.15947 * 10 9 7 12 12 N 1.46897 * 109.34221 * 306.17288 * 11 10 9 13 13 C 1.46898 * 110.99900 * 187.25147 * 12 11 10 14 14 C 1.50694 * 109.47198 * 65.69915 * 13 12 11 15 15 H 1.08005 * 120.00143 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00293 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00420 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99674 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47104 * 89.99344 * 18 16 14 20 20 H 1.48496 * 109.47047 * 209.99802 * 18 16 14 21 21 H 1.48503 * 109.46859 * 329.99323 * 18 16 14 22 22 C 1.46906 * 111.26617 * 63.10317 * 12 11 10 23 23 C 1.47085 * 120.88045 * 354.72461 * 9 7 6 24 24 H 1.08991 * 109.47082 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47099 * 300.00324 * 1 2 3 26 26 H 1.09004 * 109.46701 * 59.99623 * 1 2 3 27 27 H 1.09000 * 109.47099 * 239.99676 * 2 1 3 28 28 H 1.09000 * 109.46771 * 119.99616 * 2 1 3 29 29 H 1.09000 * 109.47357 * 59.99834 * 3 2 1 30 30 H 1.08996 * 109.47297 * 299.99827 * 3 2 1 31 31 H 1.09004 * 109.46550 * 263.61626 * 5 4 3 32 32 H 1.08997 * 109.47085 * 23.60718 * 5 4 3 33 33 H 1.08995 * 109.47424 * 143.61592 * 5 4 3 34 34 H 1.07992 * 119.99791 * 352.00914 * 6 4 3 35 35 H 1.09000 * 109.63461 * 350.87402 * 10 9 7 36 36 H 1.09002 * 109.62790 * 111.45626 * 10 9 7 37 37 H 1.08997 * 109.48978 * 66.13635 * 11 10 9 38 38 H 1.09004 * 109.49107 * 186.21407 * 11 10 9 39 39 H 1.08999 * 109.46645 * 185.70493 * 13 12 11 40 40 H 1.09006 * 109.46846 * 305.69655 * 13 12 11 41 41 H 0.96998 * 120.00127 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.49129 * 176.93581 * 22 12 11 43 43 H 1.08998 * 109.49165 * 56.85548 * 22 12 11 44 44 H 1.08995 * 109.62530 * 248.54794 * 23 9 7 45 45 H 1.09001 * 109.62526 * 9.12575 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3001 1.3288 1.3011 6 6 4.2126 1.5426 -1.1465 7 6 5.6729 1.7197 -1.1366 8 8 6.2581 1.8857 -0.0836 9 7 6.3622 1.6979 -2.2946 10 6 7.8041 1.9864 -2.3203 11 6 8.0674 3.0569 -3.3847 12 7 7.4987 2.6189 -4.6664 13 6 7.8774 3.5346 -5.7508 14 6 9.3668 3.4661 -5.9690 15 1 9.9718 2.8084 -5.3625 16 6 9.9574 4.2431 -6.9429 17 7 11.2573 4.1837 -7.1330 18 14 8.9112 5.3813 -7.9915 19 1 8.8182 6.7111 -7.3371 20 1 9.5335 5.5313 -9.3314 21 1 7.5501 4.8061 -8.1395 22 6 6.0388 2.4786 -4.5813 23 6 5.6924 1.3845 -3.5661 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 4.5805 2.3239 1.6466 32 1 3.6659 0.8505 2.0475 33 1 5.1982 0.7301 1.1498 34 1 3.6809 1.4940 -2.0852 35 1 8.1214 2.3544 -1.3445 36 1 8.3546 1.0792 -2.5693 37 1 7.6010 3.9941 -3.0812 38 1 9.1419 3.2038 -3.4948 39 1 7.3622 3.2457 -6.6668 40 1 7.5960 4.5527 -5.4814 41 1 11.6727 4.7301 -7.8185 42 1 5.6421 2.2062 -5.5593 43 1 5.6007 3.4239 -4.2611 44 1 6.0399 0.4194 -3.9348 45 1 4.6134 1.3545 -3.4138 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827485337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:54 Heat of formation + Delta-G solvation = -38.929021 kcal Electronic energy + Delta-G solvation = -22129.610273 eV Core-core repulsion = 18953.399548 eV Total energy + Delta-G solvation = -3176.210726 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.28214 -39.25249 -37.43241 -35.98393 -34.42010 -33.75383 -32.21248 -30.70260 -28.78010 -27.94284 -27.07858 -24.75726 -23.63773 -22.85695 -22.08840 -20.49462 -19.18465 -18.77034 -18.39761 -16.82636 -16.57430 -16.43469 -16.06529 -15.83407 -15.71514 -15.31106 -15.11551 -14.75753 -14.55209 -14.43025 -14.22947 -13.92552 -13.56254 -13.39585 -13.24265 -12.89423 -12.71959 -12.58967 -12.50667 -12.27299 -12.20550 -12.17341 -12.07516 -11.84535 -11.77224 -11.46511 -11.42695 -10.80207 -10.55187 -10.12604 -9.63740 -9.07265 -8.28632 -6.32511 0.39802 1.34961 1.36208 1.47083 2.02343 2.26956 2.34070 3.03042 3.14828 3.53234 3.85583 3.91346 4.01909 4.14343 4.15234 4.21125 4.24339 4.30557 4.40477 4.54543 4.60220 4.68838 4.71705 4.79147 4.80439 4.81978 4.84779 4.90453 4.92868 5.00215 5.05220 5.08719 5.15414 5.26296 5.27729 5.45903 5.49930 5.51824 5.58278 5.66159 5.93032 6.25818 6.48849 6.62543 6.73879 7.19121 7.31114 8.87864 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031032 B = 0.003246 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.087990 B = 8625.067801 C = 9203.107905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.088 4.088 4 C -0.018 4.018 5 C -0.121 4.121 6 C -0.245 4.245 7 C 0.537 3.463 8 O -0.583 6.583 9 N -0.611 5.611 10 C 0.128 3.872 11 C 0.059 3.941 12 N -0.541 5.541 13 C 0.173 3.827 14 C -0.518 4.518 15 H 0.039 0.961 16 C 0.007 3.993 17 N -0.948 5.948 18 Si 0.948 3.052 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.244 1.244 22 C 0.034 3.966 23 C 0.117 3.883 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.154 0.846 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.019 0.981 38 H 0.069 0.931 39 H 0.039 0.961 40 H -0.017 1.017 41 H 0.267 0.733 42 H 0.099 0.901 43 H 0.030 0.970 44 H 0.081 0.919 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.276 -7.062 12.471 28.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.125 4.125 4 C -0.020 4.020 5 C -0.177 4.177 6 C -0.265 4.265 7 C 0.331 3.669 8 O -0.466 6.466 9 N -0.343 5.343 10 C 0.004 3.996 11 C -0.070 4.070 12 N -0.265 5.265 13 C 0.046 3.954 14 C -0.556 4.556 15 H 0.057 0.943 16 C -0.190 4.190 17 N -0.589 5.589 18 Si 0.772 3.228 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.167 1.167 22 C -0.095 4.095 23 C -0.005 4.005 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.171 0.829 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.037 0.963 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.000 1.000 41 H 0.076 0.924 42 H 0.117 0.883 43 H 0.048 0.952 44 H 0.099 0.901 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -23.638 -7.381 12.781 27.867 hybrid contribution 0.494 1.497 -0.574 1.678 sum -23.145 -5.883 12.206 26.819 Atomic orbital electron populations 1.21776 0.94598 1.02183 1.02338 1.21476 0.96581 0.94933 1.02543 1.20916 0.88419 0.98681 1.04516 1.22809 0.96942 0.87693 0.94519 1.21044 0.99657 1.02407 0.94612 1.22510 0.91313 1.12194 1.00493 1.19172 0.89152 0.76126 0.82452 1.90720 1.72283 1.52335 1.31252 1.48203 1.09151 1.68865 1.08085 1.21516 0.81237 0.98309 0.98498 1.22220 1.00427 0.95180 0.89175 1.61815 1.10125 1.50382 1.04220 1.19942 0.95040 0.89550 0.90868 1.21264 0.92334 1.23676 1.18354 0.94318 1.25864 0.96081 0.98582 0.98509 1.70048 1.11641 1.42300 1.34868 0.85702 0.80025 0.79102 0.78007 1.19754 1.20714 1.16738 1.22633 0.87894 0.98087 1.00861 1.22081 0.99019 0.98108 0.81259 0.92290 0.92265 0.92207 0.91769 0.91867 0.89306 0.89494 0.91571 0.90482 0.91928 0.82881 0.89856 0.91123 0.96301 0.91225 0.94328 0.99964 0.92434 0.88251 0.95211 0.90089 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 71.98 0.71 -0.49 16 2 C -0.12 -1.18 5.92 30.59 0.18 -1.00 16 3 C -0.09 -1.00 5.36 29.85 0.16 -0.84 16 4 C -0.02 -0.32 5.36 -17.61 -0.09 -0.41 16 5 C -0.12 -2.49 8.45 71.24 0.60 -1.89 16 6 C -0.24 -5.04 8.91 23.43 0.21 -4.84 16 7 C 0.54 15.70 7.49 86.57 0.65 16.35 16 8 O -0.58 -20.60 12.79 -4.08 -0.05 -20.66 16 9 N -0.61 -17.99 3.01 -822.21 -2.47 -20.47 16 10 C 0.13 4.37 6.58 86.35 0.57 4.94 16 11 C 0.06 2.34 5.46 86.39 0.47 2.81 16 12 N -0.54 -21.73 4.62 -899.82 -4.16 -25.89 16 13 C 0.17 8.11 3.79 85.56 0.32 8.43 16 14 C -0.52 -29.70 8.96 25.60 0.23 -29.47 16 15 H 0.04 2.48 7.37 -2.91 -0.02 2.46 16 16 C 0.01 0.40 5.47 84.66 0.46 0.87 16 17 N -0.95 -59.24 13.96 21.45 0.30 -58.94 16 18 Si 0.95 43.51 27.47 68.60 1.88 45.40 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 22 C 0.03 1.00 5.62 86.38 0.49 1.48 16 23 C 0.12 2.78 6.52 86.35 0.56 3.35 16 24 H 0.06 0.44 8.14 -2.39 -0.02 0.43 16 25 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 0.83 8.04 -2.39 -0.02 0.82 16 31 H 0.07 1.53 7.98 -2.39 -0.02 1.51 16 32 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 33 H 0.06 1.63 6.27 -2.39 -0.01 1.62 16 34 H 0.15 2.26 5.93 -2.91 -0.02 2.24 16 35 H 0.08 2.92 7.10 -2.39 -0.02 2.90 16 36 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 3.18 6.67 -2.38 -0.02 3.16 16 39 H 0.04 1.75 7.03 -2.39 -0.02 1.73 16 40 H -0.02 -0.81 7.55 -2.38 -0.02 -0.83 16 41 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.10 2.59 7.99 -2.39 -0.02 2.57 16 43 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.12 1.95 5.38 -2.39 -0.01 1.94 16 Total: -1.00 -70.85 351.50 1.91 -68.93 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.89 Total: 12.34 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 5.52 Total: -0.72 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -6.33 Total: -105.29 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.05 Total: -20.66 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.40 kcal Total: -70.85 1.91 -68.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827485337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.005 kcal (2) G-P(sol) polarization free energy of solvation -70.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds