Wall clock time and date at job start Fri Apr 10 2020 17:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47332 * 2 1 4 4 C 1.50704 * 120.00218 * 271.84464 * 3 2 1 5 5 C 1.32995 * 119.99904 * 92.11648 * 3 2 1 6 6 C 1.47104 * 119.99954 * 352.17173 * 5 3 2 7 7 O 1.21618 * 119.99808 * 353.46221 * 6 5 3 8 8 N 1.34769 * 120.00077 * 173.46346 * 6 5 3 9 9 C 1.46496 * 120.00200 * 180.02562 * 8 6 5 10 10 H 1.09001 * 110.01823 * 34.29395 * 9 8 6 11 11 C 1.53883 * 110.03456 * 272.90712 * 9 8 6 12 12 C 1.54263 * 106.59894 * 240.71613 * 11 9 8 13 13 C 1.54890 * 104.19813 * 23.60608 * 12 11 9 14 14 H 1.09003 * 110.75338 * 80.37073 * 13 12 11 15 15 C 1.52996 * 110.75653 * 203.55931 * 13 12 11 16 16 N 1.46499 * 109.47040 * 293.54731 * 15 13 12 17 17 C 1.36942 * 120.00217 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99669 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00279 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00194 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00092 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46800 * 89.99896 * 21 19 17 23 23 H 1.48492 * 109.47455 * 210.00047 * 21 19 17 24 24 H 1.48494 * 109.47098 * 330.00418 * 21 19 17 25 25 C 1.54265 * 110.03584 * 155.69015 * 9 8 6 26 26 H 1.09003 * 109.47491 * 299.99919 * 1 2 3 27 27 H 1.09005 * 109.46961 * 59.99675 * 1 2 3 28 28 H 1.08994 * 109.47191 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46810 * 240.00397 * 2 1 3 30 30 H 1.08991 * 109.47202 * 120.00352 * 2 1 3 31 31 H 1.09003 * 109.46704 * 270.27369 * 4 3 2 32 32 H 1.09001 * 109.46829 * 30.27221 * 4 3 2 33 33 H 1.08996 * 109.47444 * 150.27579 * 4 3 2 34 34 H 1.08001 * 119.99970 * 172.17432 * 5 3 2 35 35 H 0.96999 * 120.00241 * 359.97438 * 8 6 5 36 36 H 1.09001 * 110.02819 * 359.97438 * 11 9 8 37 37 H 1.08995 * 110.03284 * 121.37693 * 11 9 8 38 38 H 1.08999 * 110.48673 * 142.28373 * 12 11 9 39 39 H 1.09000 * 110.48645 * 264.79692 * 12 11 9 40 40 H 1.08997 * 109.47199 * 53.54624 * 15 13 12 41 41 H 1.09003 * 109.47330 * 173.55016 * 15 13 12 42 42 H 0.97001 * 120.00474 * 359.97438 * 16 15 13 43 43 H 0.96996 * 120.00292 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.48936 * 214.34992 * 25 9 8 45 45 H 1.08997 * 110.48522 * 336.99918 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2440 2.1453 -1.3044 5 6 2.2941 2.0335 1.1510 6 6 1.9330 1.3919 2.4245 7 8 1.2901 0.3596 2.4245 8 7 2.3146 1.9481 3.5913 9 6 1.9554 1.3089 4.8596 10 1 1.9574 0.2250 4.7448 11 6 0.5663 1.7880 5.3166 12 6 0.7656 2.4799 6.6809 13 6 2.2530 2.9123 6.6739 14 1 2.3845 3.8342 6.1073 15 6 2.7766 3.0766 8.1020 16 7 2.0952 4.2025 8.7455 17 6 2.4026 4.5419 10.0361 18 1 3.1471 3.9793 10.5797 19 6 1.7573 5.6091 10.6456 20 7 0.8496 6.2946 9.9834 21 14 2.1762 6.0716 12.4063 22 1 3.2830 7.0617 12.4081 23 1 0.9816 6.6634 13.0603 24 1 2.5972 4.8574 13.1503 25 6 2.9510 1.7254 5.9619 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.2619 1.9735 -1.6544 32 1 1.5371 1.7726 -2.0458 33 1 2.0860 3.2135 -1.1566 34 1 2.7718 3.0022 1.1507 35 1 2.8276 2.7713 3.5913 36 1 0.1597 2.4964 4.5949 37 1 -0.1057 0.9366 5.4235 38 1 0.1156 3.3508 6.7655 39 1 0.5734 1.7809 7.4949 40 1 2.5839 2.1645 8.6668 41 1 3.8494 3.2681 8.0759 42 1 1.4267 4.7082 8.2572 43 1 0.3989 7.0405 10.4092 44 1 3.1135 0.9039 6.6596 45 1 3.8953 2.0458 5.5218 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332260998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:41 Heat of formation + Delta-G solvation = -31.963903 kcal Electronic energy + Delta-G solvation = -21757.245961 eV Core-core repulsion = 18581.337266 eV Total energy + Delta-G solvation = -3175.908695 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.17904 -38.27125 -36.09107 -34.67548 -33.29164 -31.29155 -30.82500 -28.75107 -28.71759 -27.20957 -24.44857 -23.81384 -22.19226 -21.60200 -20.03876 -19.61337 -18.71897 -17.20715 -17.01201 -16.09299 -15.29429 -15.04287 -14.77250 -14.65882 -14.18459 -13.91205 -13.78921 -13.36540 -13.05671 -12.99458 -12.90238 -12.78365 -12.54223 -12.16392 -12.10622 -11.77523 -11.28880 -11.15926 -11.02176 -10.92478 -10.83454 -10.66675 -10.50755 -10.27057 -10.20487 -9.92798 -9.64029 -9.56167 -9.33123 -8.87956 -8.83488 -6.88477 -5.74313 -3.02365 1.20144 3.22815 3.25533 3.44710 3.49775 3.51599 4.51964 4.54757 4.59636 4.74853 4.83294 4.98185 5.11160 5.12748 5.20077 5.22810 5.40717 5.47331 5.54008 5.55989 5.57015 5.65700 5.73473 5.74256 5.80495 5.91487 5.94509 6.02585 6.14727 6.16606 6.19397 6.28379 6.30251 6.36566 6.43600 6.57431 6.64853 6.70104 6.83661 6.97055 7.56364 7.71999 8.27213 8.45109 9.56069 10.15378 10.49973 11.48755 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.040370 B = 0.002666 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.415779 B =10500.224135 C =10614.724501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.105 4.105 3 C -0.030 4.030 4 C -0.127 4.127 5 C -0.233 4.233 6 C 0.543 3.457 7 O -0.539 6.539 8 N -0.718 5.718 9 C 0.142 3.858 10 H 0.086 0.914 11 C -0.132 4.132 12 C -0.112 4.112 13 C -0.097 4.097 14 H 0.073 0.927 15 C 0.160 3.840 16 N -0.732 5.732 17 C -0.237 4.237 18 H 0.069 0.931 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.123 4.123 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.125 0.875 35 H 0.400 0.600 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.019 0.981 41 H 0.016 0.984 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.080 0.920 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.038 -10.514 -21.995 24.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.141 4.141 3 C -0.032 4.032 4 C -0.184 4.184 5 C -0.254 4.254 6 C 0.333 3.667 7 O -0.419 6.419 8 N -0.369 5.369 9 C 0.038 3.962 10 H 0.104 0.896 11 C -0.171 4.171 12 C -0.150 4.150 13 C -0.116 4.116 14 H 0.092 0.908 15 C 0.033 3.967 16 N -0.376 5.376 17 C -0.369 4.369 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.162 4.162 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.143 0.857 35 H 0.234 0.766 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.037 0.963 41 H 0.034 0.966 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.099 0.901 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.647 -11.258 -21.795 24.673 hybrid contribution 0.282 1.110 0.864 1.435 sum 2.928 -10.148 -20.930 23.444 Atomic orbital electron populations 1.21523 0.94211 1.01623 1.01490 1.20996 0.97166 0.92549 1.03435 1.22557 0.90468 0.95768 0.94418 1.20998 1.02610 1.00202 0.94578 1.22417 1.08331 1.02495 0.92170 1.18556 0.79560 0.84274 0.84330 1.90713 1.39953 1.23830 1.87449 1.46131 1.56770 1.28350 1.05632 1.21621 0.94540 0.97772 0.82292 0.89555 1.22596 0.96261 1.00364 0.97838 1.22335 0.96540 1.00330 0.95775 1.22331 0.94926 0.97063 0.97275 0.90830 1.20638 0.94872 0.91462 0.89733 1.42352 1.47549 1.34524 1.13172 1.19244 1.17511 1.10613 0.89515 0.91261 1.24735 0.99262 0.98721 0.98416 1.69659 1.29174 1.22788 1.36722 0.86191 0.77175 0.78168 0.84685 1.21776 1.21797 1.20794 1.22686 0.97545 0.99269 0.96680 0.91661 0.93871 0.92791 0.92360 0.87934 0.90548 0.90945 0.91085 0.85744 0.76601 0.91733 0.91637 0.91220 0.91365 0.96303 0.96570 0.78274 0.93566 0.90111 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.44 37.16 0.35 -0.95 16 2 C -0.10 -1.01 5.31 -27.88 -0.15 -1.16 16 3 C -0.03 -0.27 5.36 -101.16 -0.54 -0.81 16 4 C -0.13 -0.77 10.04 36.01 0.36 -0.41 16 5 C -0.23 -2.22 9.62 -37.80 -0.36 -2.58 16 6 C 0.54 6.52 7.59 -12.67 -0.10 6.43 16 7 O -0.54 -7.83 11.29 5.26 0.06 -7.77 16 8 N -0.72 -7.94 4.93 -53.90 -0.27 -8.21 16 9 C 0.14 1.75 3.23 -66.81 -0.22 1.54 16 10 H 0.09 1.13 7.59 -51.93 -0.39 0.74 16 11 C -0.13 -1.79 6.59 -25.61 -0.17 -1.96 16 12 C -0.11 -1.75 5.97 -25.07 -0.15 -1.90 16 13 C -0.10 -1.52 2.96 -88.56 -0.26 -1.78 16 14 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 15 C 0.16 3.20 5.71 -4.04 -0.02 3.18 16 16 N -0.73 -18.60 5.45 -59.91 -0.33 -18.93 16 17 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 21 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C -0.12 -1.53 5.89 -25.00 -0.15 -1.67 16 26 H 0.06 0.79 6.84 -51.93 -0.36 0.43 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 30 H 0.10 1.23 5.62 -51.93 -0.29 0.94 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 33 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.40 3.69 8.55 -40.82 -0.35 3.34 16 36 H 0.06 0.90 7.92 -51.93 -0.41 0.49 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.07 1.12 8.02 -51.93 -0.42 0.70 16 40 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.38 10.22 7.53 -40.82 -0.31 9.91 16 43 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.08 0.98 8.05 -51.93 -0.42 0.56 16 45 H 0.07 0.78 7.98 -51.93 -0.41 0.36 16 LS Contribution 360.53 15.07 5.43 5.43 Total: -1.00 -31.82 360.53 -9.02 -40.84 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -7.97 Total: 8.32 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -1.65 Total: -9.50 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.13 Total: -54.89 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.06 Total: -7.77 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.82 -9.02 -40.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332260998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.875 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds