Wall clock time and date at job start Fri Apr 10 2020 17:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47332 * 2 1 4 4 C 1.50704 * 120.00218 * 271.84464 * 3 2 1 5 5 C 1.32995 * 119.99904 * 92.11648 * 3 2 1 6 6 C 1.47104 * 119.99954 * 352.17173 * 5 3 2 7 7 O 1.21618 * 119.99808 * 353.46221 * 6 5 3 8 8 N 1.34769 * 120.00077 * 173.46346 * 6 5 3 9 9 C 1.46496 * 120.00200 * 180.02562 * 8 6 5 10 10 H 1.09001 * 110.01823 * 34.29395 * 9 8 6 11 11 C 1.53883 * 110.03456 * 272.90712 * 9 8 6 12 12 C 1.54263 * 106.59894 * 240.71613 * 11 9 8 13 13 C 1.54890 * 104.19813 * 23.60608 * 12 11 9 14 14 H 1.09003 * 110.75338 * 80.37073 * 13 12 11 15 15 C 1.52996 * 110.75653 * 203.55931 * 13 12 11 16 16 N 1.46499 * 109.47040 * 293.54731 * 15 13 12 17 17 C 1.36942 * 120.00217 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99669 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00279 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00194 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00092 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46800 * 89.99896 * 21 19 17 23 23 H 1.48492 * 109.47455 * 210.00047 * 21 19 17 24 24 H 1.48494 * 109.47098 * 330.00418 * 21 19 17 25 25 C 1.54265 * 110.03584 * 155.69015 * 9 8 6 26 26 H 1.09003 * 109.47491 * 299.99919 * 1 2 3 27 27 H 1.09005 * 109.46961 * 59.99675 * 1 2 3 28 28 H 1.08994 * 109.47191 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46810 * 240.00397 * 2 1 3 30 30 H 1.08991 * 109.47202 * 120.00352 * 2 1 3 31 31 H 1.09003 * 109.46704 * 270.27369 * 4 3 2 32 32 H 1.09001 * 109.46829 * 30.27221 * 4 3 2 33 33 H 1.08996 * 109.47444 * 150.27579 * 4 3 2 34 34 H 1.08001 * 119.99970 * 172.17432 * 5 3 2 35 35 H 0.96999 * 120.00241 * 359.97438 * 8 6 5 36 36 H 1.09001 * 110.02819 * 359.97438 * 11 9 8 37 37 H 1.08995 * 110.03284 * 121.37693 * 11 9 8 38 38 H 1.08999 * 110.48673 * 142.28373 * 12 11 9 39 39 H 1.09000 * 110.48645 * 264.79692 * 12 11 9 40 40 H 1.08997 * 109.47199 * 53.54624 * 15 13 12 41 41 H 1.09003 * 109.47330 * 173.55016 * 15 13 12 42 42 H 0.97001 * 120.00474 * 359.97438 * 16 15 13 43 43 H 0.96996 * 120.00292 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.48936 * 214.34992 * 25 9 8 45 45 H 1.08997 * 110.48522 * 336.99918 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2440 2.1453 -1.3044 5 6 2.2941 2.0335 1.1510 6 6 1.9330 1.3919 2.4245 7 8 1.2901 0.3596 2.4245 8 7 2.3146 1.9481 3.5913 9 6 1.9554 1.3089 4.8596 10 1 1.9574 0.2250 4.7448 11 6 0.5663 1.7880 5.3166 12 6 0.7656 2.4799 6.6809 13 6 2.2530 2.9123 6.6739 14 1 2.3845 3.8342 6.1073 15 6 2.7766 3.0766 8.1020 16 7 2.0952 4.2025 8.7455 17 6 2.4026 4.5419 10.0361 18 1 3.1471 3.9793 10.5797 19 6 1.7573 5.6091 10.6456 20 7 0.8496 6.2946 9.9834 21 14 2.1762 6.0716 12.4063 22 1 3.2830 7.0617 12.4081 23 1 0.9816 6.6634 13.0603 24 1 2.5972 4.8574 13.1503 25 6 2.9510 1.7254 5.9619 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.2619 1.9735 -1.6544 32 1 1.5371 1.7726 -2.0458 33 1 2.0860 3.2135 -1.1566 34 1 2.7718 3.0022 1.1507 35 1 2.8276 2.7713 3.5913 36 1 0.1597 2.4964 4.5949 37 1 -0.1057 0.9366 5.4235 38 1 0.1156 3.3508 6.7655 39 1 0.5734 1.7809 7.4949 40 1 2.5839 2.1645 8.6668 41 1 3.8494 3.2681 8.0759 42 1 1.4267 4.7082 8.2572 43 1 0.3989 7.0405 10.4092 44 1 3.1135 0.9039 6.6596 45 1 3.8953 2.0458 5.5218 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332260998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:38 Heat of formation + Delta-G solvation = -51.316581 kcal Electronic energy + Delta-G solvation = -21758.085156 eV Core-core repulsion = 18581.337266 eV Total energy + Delta-G solvation = -3176.747891 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 3.54 seconds Orbital eigenvalues (eV) -41.12815 -39.40118 -37.00218 -36.23985 -34.62686 -32.97768 -31.73321 -30.17814 -29.60057 -28.22882 -26.17930 -24.61754 -23.96419 -22.50059 -21.09007 -20.98264 -19.51944 -19.09604 -18.03648 -17.09335 -16.72309 -16.23839 -15.93193 -15.76371 -15.59289 -15.11415 -14.91517 -14.56776 -14.42728 -14.34308 -13.74288 -13.64208 -13.51297 -13.10870 -13.09252 -12.89020 -12.79316 -12.78625 -12.30170 -12.16221 -12.06715 -11.95727 -11.83087 -11.68037 -11.62245 -11.50924 -11.45876 -10.91000 -10.47476 -10.10782 -9.75366 -8.97565 -7.94507 -5.22721 0.46708 1.47243 1.49019 1.57505 2.35834 2.38985 2.56590 3.38935 3.59066 3.59507 3.85521 3.88651 3.92883 4.18929 4.27517 4.44545 4.49971 4.53759 4.54560 4.56570 4.60936 4.67985 4.72590 4.77015 4.79245 4.85749 4.88377 5.01002 5.06323 5.08628 5.11429 5.17849 5.23048 5.30796 5.37392 5.41244 5.48814 5.55848 5.56592 5.73536 5.74745 6.28338 6.71124 7.34424 7.39287 8.12243 8.34975 9.29249 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.040370 B = 0.002666 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.415779 B =10500.224135 C =10614.724501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.107 4.107 3 C -0.025 4.025 4 C -0.125 4.125 5 C -0.247 4.247 6 C 0.536 3.464 7 O -0.570 6.570 8 N -0.713 5.713 9 C 0.150 3.850 10 H 0.082 0.918 11 C -0.122 4.122 12 C -0.109 4.109 13 C -0.089 4.089 14 H 0.072 0.928 15 C 0.158 3.842 16 N -0.745 5.745 17 C -0.244 4.244 18 H 0.075 0.925 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.974 3.026 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.270 1.270 25 C -0.109 4.109 26 H 0.038 0.962 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.148 0.852 35 H 0.410 0.590 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.019 0.981 41 H 0.022 0.978 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.087 0.913 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.450 -10.818 -23.292 26.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.144 4.144 3 C -0.027 4.027 4 C -0.181 4.181 5 C -0.268 4.268 6 C 0.327 3.673 7 O -0.452 6.452 8 N -0.364 5.364 9 C 0.045 3.955 10 H 0.100 0.900 11 C -0.161 4.161 12 C -0.147 4.147 13 C -0.108 4.108 14 H 0.091 0.909 15 C 0.032 3.968 16 N -0.387 5.387 17 C -0.376 4.376 18 H 0.093 0.907 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.803 3.197 22 H -0.213 1.213 23 H -0.222 1.222 24 H -0.195 1.195 25 C -0.147 4.147 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.165 0.835 35 H 0.247 0.753 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.040 0.960 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.105 0.895 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.101 -11.581 -23.103 26.167 hybrid contribution -0.164 1.126 1.216 1.666 sum 3.937 -10.455 -21.886 24.573 Atomic orbital electron populations 1.21471 0.94533 1.01538 1.00939 1.20964 0.96888 0.93420 1.03106 1.22835 0.88971 0.95243 0.95631 1.21052 1.03748 1.00320 0.92994 1.22503 1.09671 1.03570 0.91043 1.19048 0.79033 0.83955 0.85260 1.90711 1.41362 1.25246 1.87927 1.46057 1.56689 1.28645 1.04996 1.21416 0.93587 0.97553 0.82903 0.89986 1.22493 0.97307 0.99968 0.96335 1.22246 0.96326 0.99332 0.96768 1.22203 0.95029 0.98526 0.94992 0.90943 1.20815 0.94709 0.89493 0.91776 1.42576 1.47719 1.35770 1.12674 1.19659 1.16956 1.10285 0.90727 0.90718 1.25573 0.99680 0.99163 1.02559 1.69818 1.30570 1.23402 1.38372 0.85135 0.76622 0.78069 0.79922 1.21293 1.22247 1.19481 1.22591 0.97951 0.97817 0.96356 0.94286 0.92166 0.92741 0.90454 0.90453 0.89014 0.90057 0.90216 0.83461 0.75349 0.92135 0.91630 0.93502 0.92327 0.96298 0.96047 0.79441 0.94042 0.89453 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.44 71.98 0.68 -1.77 16 2 C -0.11 -1.96 5.31 29.85 0.16 -1.80 16 3 C -0.02 -0.39 5.36 -17.61 -0.09 -0.49 16 4 C -0.12 -1.13 10.04 71.24 0.72 -0.41 16 5 C -0.25 -4.29 9.62 23.43 0.23 -4.06 16 6 C 0.54 12.44 7.59 86.57 0.66 13.10 16 7 O -0.57 -16.61 11.29 -4.09 -0.05 -16.66 16 8 N -0.71 -14.82 4.93 -442.69 -2.18 -17.00 16 9 C 0.15 3.54 3.23 45.72 0.15 3.69 16 10 H 0.08 2.08 7.59 -2.39 -0.02 2.06 16 11 C -0.12 -3.29 6.59 31.32 0.21 -3.08 16 12 C -0.11 -3.45 5.97 31.67 0.19 -3.26 16 13 C -0.09 -2.71 2.96 -9.46 -0.03 -2.74 16 14 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 15 C 0.16 6.23 5.71 86.38 0.49 6.72 16 16 N -0.74 -38.14 5.45 -343.46 -1.87 -40.02 16 17 C -0.24 -13.81 9.99 84.03 0.84 -12.97 16 18 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 19 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 20 N -0.97 -60.07 13.06 21.65 0.28 -59.78 16 21 Si 0.97 46.52 29.55 68.60 2.03 48.55 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 C -0.11 -2.49 5.89 31.71 0.19 -2.31 16 26 H 0.04 0.95 6.84 -2.39 -0.02 0.93 16 27 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 1.09 8.13 -2.39 -0.02 1.07 16 30 H 0.08 1.85 5.62 -2.39 -0.01 1.84 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 0.62 8.12 -2.39 -0.02 0.60 16 33 H 0.08 0.62 8.07 -2.39 -0.02 0.60 16 34 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.41 6.76 8.55 -92.71 -0.79 5.97 16 36 H 0.06 1.68 7.92 -2.39 -0.02 1.66 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 1.95 8.02 -2.39 -0.02 1.93 16 40 H 0.02 0.76 8.10 -2.39 -0.02 0.74 16 41 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.37 20.36 7.53 -92.71 -0.70 19.67 16 43 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 44 H 0.09 1.94 8.05 -2.39 -0.02 1.92 16 45 H 0.09 1.75 7.98 -2.39 -0.02 1.73 16 Total: -1.00 -68.83 360.53 2.53 -66.31 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -0.52 Total: 32.02 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 4.84 Total: -13.42 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -3.77 Total: -116.80 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.05 Total: -16.66 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -68.83 2.53 -66.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332260998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.989 kcal (2) G-P(sol) polarization free energy of solvation -68.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.54 seconds