Wall clock time and date at job start Fri Apr 10 2020 17:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47235 * 2 1 4 4 C 1.50701 * 120.00266 * 275.00163 * 3 2 1 5 5 C 1.32994 * 120.00230 * 95.00301 * 3 2 1 6 6 C 1.47097 * 120.00295 * 185.64069 * 5 3 2 7 7 O 1.21612 * 119.99944 * 354.73180 * 6 5 3 8 8 N 1.34777 * 120.00000 * 174.74106 * 6 5 3 9 9 C 1.46507 * 119.99795 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.53939 * 36.15395 * 9 8 6 11 11 C 1.54895 * 110.48283 * 273.54254 * 9 8 6 12 12 C 1.54888 * 102.90998 * 203.47066 * 11 9 8 13 13 C 1.54258 * 104.19775 * 37.85338 * 12 11 9 14 14 H 1.09009 * 110.03315 * 95.67090 * 13 12 11 15 15 C 1.52994 * 110.03452 * 217.05246 * 13 12 11 16 16 N 1.46504 * 109.47131 * 293.54638 * 15 13 12 17 17 C 1.36939 * 119.99840 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00526 * 359.97438 * 17 16 15 19 19 C 1.38820 * 119.99727 * 180.02562 * 17 16 15 20 20 N 1.31610 * 119.99948 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99652 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47409 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46940 * 120.00146 * 21 19 17 24 24 H 1.48503 * 109.47339 * 239.99700 * 21 19 17 25 25 C 1.53876 * 106.59860 * 336.38634 * 13 12 11 26 26 H 1.08994 * 109.46908 * 300.00000 * 1 2 3 27 27 H 1.09003 * 109.46797 * 59.99920 * 1 2 3 28 28 H 1.09002 * 109.46841 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47220 * 239.99868 * 2 1 3 30 30 H 1.08996 * 109.47096 * 120.00339 * 2 1 3 31 31 H 1.08998 * 109.47305 * 238.23973 * 4 3 2 32 32 H 1.09001 * 109.46813 * 358.22970 * 4 3 2 33 33 H 1.08993 * 109.47538 * 118.23124 * 4 3 2 34 34 H 1.07996 * 119.99853 * 5.62806 * 5 3 2 35 35 H 0.96992 * 120.00226 * 359.97438 * 8 6 5 36 36 H 1.09000 * 110.75485 * 85.06967 * 11 9 8 37 37 H 1.08997 * 110.75757 * 321.88189 * 11 9 8 38 38 H 1.09011 * 110.48178 * 156.52997 * 12 11 9 39 39 H 1.09002 * 110.49031 * 279.03544 * 12 11 9 40 40 H 1.08998 * 109.47359 * 53.54346 * 15 13 12 41 41 H 1.09004 * 109.47604 * 173.54736 * 15 13 12 42 42 H 0.96991 * 120.00135 * 359.97438 * 16 15 13 43 43 H 0.97000 * 120.00147 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.02914 * 119.28565 * 25 13 12 45 45 H 1.09000 * 110.02988 * 240.71298 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1763 2.1692 -1.3001 5 6 2.3488 2.0143 1.1473 6 6 2.7200 3.4375 1.1614 7 8 2.8309 4.0473 0.1150 8 7 2.9374 4.0658 2.3338 9 6 3.3077 5.4832 2.3477 10 1 2.7890 6.0218 1.5545 11 6 4.8411 5.6443 2.1993 12 6 5.1053 7.0352 2.8276 13 6 4.1375 7.0985 4.0271 14 1 4.6536 6.7995 4.9395 15 6 3.5836 8.5165 4.1794 16 7 4.6684 9.4267 4.5551 17 6 4.4096 10.7576 4.7478 18 1 3.4060 11.1363 4.6225 19 6 5.4376 11.6201 5.1033 20 7 6.6608 11.1587 5.2555 21 14 5.0848 13.4356 5.3655 22 1 3.6414 13.6977 5.1352 23 1 5.4399 13.8129 6.7572 24 1 5.8925 14.2395 4.4133 25 6 2.9941 6.1149 3.7218 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.2101 2.4932 -1.4203 32 1 1.9021 1.5153 -2.1280 33 1 1.5210 3.0401 -1.2925 34 1 2.3329 1.4513 2.0688 35 1 2.8487 3.5795 3.1683 36 1 5.1307 5.6338 1.1485 37 1 5.3666 4.8649 2.7511 38 1 6.1386 7.1105 3.1667 39 1 4.8812 7.8260 2.1117 40 1 3.1488 8.8403 3.2338 41 1 2.8168 8.5259 4.9541 42 1 5.5698 9.0868 4.6672 43 1 7.3790 11.7613 5.5042 44 1 2.9554 5.3387 4.4861 45 1 2.0441 6.6477 3.6817 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332260999.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:45 Heat of formation + Delta-G solvation = -37.896577 kcal Electronic energy + Delta-G solvation = -21485.162714 eV Core-core repulsion = 18308.996758 eV Total energy + Delta-G solvation = -3176.165955 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.07624 -38.23254 -36.37736 -34.74181 -33.35449 -31.33848 -30.94718 -28.74210 -28.51070 -27.03373 -24.65083 -24.07622 -22.13984 -21.44521 -20.38757 -19.50904 -18.68101 -17.18365 -16.97373 -16.21855 -15.18734 -15.09865 -14.90549 -14.67312 -14.22577 -13.98928 -13.82991 -13.39080 -13.20910 -13.05452 -12.88128 -12.71910 -12.45215 -12.09344 -11.92644 -11.73521 -11.63890 -11.34597 -11.28137 -11.00111 -10.84180 -10.65226 -10.57084 -10.27922 -10.10613 -9.86965 -9.67675 -9.58555 -9.45744 -8.88676 -8.82389 -6.86703 -5.72726 -3.00601 1.18069 3.18153 3.24511 3.45798 3.51373 3.53683 4.36053 4.48196 4.62039 4.72882 4.82602 4.87925 4.88964 5.01874 5.11892 5.18539 5.32990 5.49439 5.52051 5.57437 5.60278 5.65236 5.66469 5.69286 5.71297 5.77182 5.88150 5.92996 5.98791 6.16514 6.22915 6.26404 6.30772 6.33440 6.36701 6.56612 6.63549 6.71843 6.85808 6.99176 7.53168 7.74335 8.24653 8.46660 9.57750 10.17083 10.51875 11.50421 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.050332 B = 0.002458 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.167836 B =11389.572086 C =11441.642860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.031 4.031 4 C -0.116 4.116 5 C -0.233 4.233 6 C 0.542 3.458 7 O -0.542 6.542 8 N -0.720 5.720 9 C 0.140 3.860 10 H 0.092 0.908 11 C -0.132 4.132 12 C -0.110 4.110 13 C -0.096 4.096 14 H 0.073 0.927 15 C 0.159 3.841 16 N -0.732 5.732 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.120 4.120 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.123 0.877 35 H 0.398 0.602 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.020 0.980 41 H 0.016 0.984 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.065 0.935 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.219 -24.533 -8.509 27.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 C -0.033 4.033 4 C -0.172 4.172 5 C -0.254 4.254 6 C 0.332 3.668 7 O -0.421 6.421 8 N -0.370 5.370 9 C 0.036 3.964 10 H 0.110 0.890 11 C -0.171 4.171 12 C -0.148 4.148 13 C -0.115 4.115 14 H 0.092 0.908 15 C 0.031 3.969 16 N -0.376 5.376 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.159 4.159 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.141 0.859 35 H 0.232 0.768 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.037 0.963 41 H 0.034 0.966 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.246 -23.915 -9.233 27.607 hybrid contribution 0.193 0.678 0.840 1.097 sum -10.053 -23.236 -8.393 26.673 Atomic orbital electron populations 1.21712 0.94053 1.02055 1.02560 1.20770 0.96650 0.92716 1.03257 1.22566 0.90055 0.95196 0.95499 1.21026 1.04020 0.99439 0.92689 1.22402 1.09426 0.94567 0.98976 1.18557 0.76992 0.87526 0.83716 1.90782 1.51832 1.68061 1.31450 1.46030 1.70761 1.11828 1.08419 1.21929 0.95640 0.80187 0.98637 0.88986 1.22878 0.95052 0.98116 1.01058 1.22310 0.99711 0.95726 0.97099 1.21874 0.95210 0.95700 0.98689 0.90842 1.20792 0.91621 0.87588 0.96861 1.42366 1.06884 1.04966 1.83408 1.19293 0.94291 0.84564 1.38630 0.91201 1.24741 0.95516 0.98126 1.02832 1.69666 0.99659 1.34136 1.54841 0.86118 0.77277 0.85491 0.77339 1.20590 1.21940 1.21901 1.22423 0.99819 0.98472 0.95170 0.92330 0.92269 0.92054 0.90518 0.90790 0.89922 0.93105 0.89838 0.85870 0.76824 0.91544 0.91722 0.91301 0.90887 0.96255 0.96580 0.78259 0.93630 0.91656 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.90 37.16 0.37 -0.42 16 2 C -0.10 -0.56 6.03 -27.88 -0.17 -0.73 16 3 C -0.03 -0.27 5.36 -101.17 -0.54 -0.81 16 4 C -0.12 -1.11 8.34 36.01 0.30 -0.81 16 5 C -0.23 -2.11 9.63 -37.81 -0.36 -2.48 16 6 C 0.54 6.56 7.72 -12.67 -0.10 6.46 16 7 O -0.54 -8.32 12.82 5.27 0.07 -8.26 16 8 N -0.72 -7.75 5.18 -53.27 -0.28 -8.03 16 9 C 0.14 1.81 3.17 -66.16 -0.21 1.60 16 10 H 0.09 1.36 7.67 -51.93 -0.40 0.96 16 11 C -0.13 -1.82 6.56 -24.74 -0.16 -1.98 16 12 C -0.11 -1.77 6.02 -25.08 -0.15 -1.93 16 13 C -0.10 -1.54 2.97 -89.51 -0.27 -1.80 16 14 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 15 C 0.16 3.24 5.32 -4.04 -0.02 3.22 16 16 N -0.73 -18.86 5.43 -59.91 -0.33 -19.18 16 17 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 18 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 19 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 20 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 21 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 C -0.12 -1.53 6.20 -25.51 -0.16 -1.68 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 0.39 8.13 -51.93 -0.42 -0.03 16 30 H 0.07 0.37 7.99 -51.93 -0.41 -0.05 16 31 H 0.08 0.92 7.32 -51.93 -0.38 0.54 16 32 H 0.05 0.38 7.99 -51.93 -0.41 -0.04 16 33 H 0.08 0.94 7.14 -51.93 -0.37 0.57 16 34 H 0.12 0.81 8.00 -52.49 -0.42 0.40 16 35 H 0.40 3.19 8.32 -40.82 -0.34 2.85 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 1.16 8.14 -51.92 -0.42 0.73 16 39 H 0.07 1.30 7.79 -51.93 -0.40 0.89 16 40 H 0.02 0.41 8.04 -51.93 -0.42 -0.01 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.38 10.33 7.51 -40.82 -0.31 10.03 16 43 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.06 0.70 7.71 -51.93 -0.40 0.30 16 45 H 0.07 0.93 7.67 -51.93 -0.40 0.53 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -32.59 362.61 -9.10 -41.69 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -8.02 Total: 7.33 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -1.72 Total: -8.84 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.12 Total: -55.16 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.07 Total: -8.26 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.59 -9.10 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332260999.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.794 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds