Wall clock time and date at job start Fri Apr 10 2020 17:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47235 * 2 1 4 4 C 1.50701 * 120.00266 * 275.00163 * 3 2 1 5 5 C 1.32994 * 120.00230 * 95.00301 * 3 2 1 6 6 C 1.47097 * 120.00295 * 185.64069 * 5 3 2 7 7 O 1.21612 * 119.99944 * 354.73180 * 6 5 3 8 8 N 1.34777 * 120.00000 * 174.74106 * 6 5 3 9 9 C 1.46507 * 119.99795 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.53939 * 36.15395 * 9 8 6 11 11 C 1.54895 * 110.48283 * 273.54254 * 9 8 6 12 12 C 1.54888 * 102.90998 * 203.47066 * 11 9 8 13 13 C 1.54258 * 104.19775 * 37.85338 * 12 11 9 14 14 H 1.09009 * 110.03315 * 95.67090 * 13 12 11 15 15 C 1.52994 * 110.03452 * 217.05246 * 13 12 11 16 16 N 1.46504 * 109.47131 * 293.54638 * 15 13 12 17 17 C 1.36939 * 119.99840 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00526 * 359.97438 * 17 16 15 19 19 C 1.38820 * 119.99727 * 180.02562 * 17 16 15 20 20 N 1.31610 * 119.99948 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99652 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47409 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46940 * 120.00146 * 21 19 17 24 24 H 1.48503 * 109.47339 * 239.99700 * 21 19 17 25 25 C 1.53876 * 106.59860 * 336.38634 * 13 12 11 26 26 H 1.08994 * 109.46908 * 300.00000 * 1 2 3 27 27 H 1.09003 * 109.46797 * 59.99920 * 1 2 3 28 28 H 1.09002 * 109.46841 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47220 * 239.99868 * 2 1 3 30 30 H 1.08996 * 109.47096 * 120.00339 * 2 1 3 31 31 H 1.08998 * 109.47305 * 238.23973 * 4 3 2 32 32 H 1.09001 * 109.46813 * 358.22970 * 4 3 2 33 33 H 1.08993 * 109.47538 * 118.23124 * 4 3 2 34 34 H 1.07996 * 119.99853 * 5.62806 * 5 3 2 35 35 H 0.96992 * 120.00226 * 359.97438 * 8 6 5 36 36 H 1.09000 * 110.75485 * 85.06967 * 11 9 8 37 37 H 1.08997 * 110.75757 * 321.88189 * 11 9 8 38 38 H 1.09011 * 110.48178 * 156.52997 * 12 11 9 39 39 H 1.09002 * 110.49031 * 279.03544 * 12 11 9 40 40 H 1.08998 * 109.47359 * 53.54346 * 15 13 12 41 41 H 1.09004 * 109.47604 * 173.54736 * 15 13 12 42 42 H 0.96991 * 120.00135 * 359.97438 * 16 15 13 43 43 H 0.97000 * 120.00147 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.02914 * 119.28565 * 25 13 12 45 45 H 1.09000 * 110.02988 * 240.71298 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1763 2.1692 -1.3001 5 6 2.3488 2.0143 1.1473 6 6 2.7200 3.4375 1.1614 7 8 2.8309 4.0473 0.1150 8 7 2.9374 4.0658 2.3338 9 6 3.3077 5.4832 2.3477 10 1 2.7890 6.0218 1.5545 11 6 4.8411 5.6443 2.1993 12 6 5.1053 7.0352 2.8276 13 6 4.1375 7.0985 4.0271 14 1 4.6536 6.7995 4.9395 15 6 3.5836 8.5165 4.1794 16 7 4.6684 9.4267 4.5551 17 6 4.4096 10.7576 4.7478 18 1 3.4060 11.1363 4.6225 19 6 5.4376 11.6201 5.1033 20 7 6.6608 11.1587 5.2555 21 14 5.0848 13.4356 5.3655 22 1 3.6414 13.6977 5.1352 23 1 5.4399 13.8129 6.7572 24 1 5.8925 14.2395 4.4133 25 6 2.9941 6.1149 3.7218 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.2101 2.4932 -1.4203 32 1 1.9021 1.5153 -2.1280 33 1 1.5210 3.0401 -1.2925 34 1 2.3329 1.4513 2.0688 35 1 2.8487 3.5795 3.1683 36 1 5.1307 5.6338 1.1485 37 1 5.3666 4.8649 2.7511 38 1 6.1386 7.1105 3.1667 39 1 4.8812 7.8260 2.1117 40 1 3.1488 8.8403 3.2338 41 1 2.8168 8.5259 4.9541 42 1 5.5698 9.0868 4.6672 43 1 7.3790 11.7613 5.5042 44 1 2.9554 5.3387 4.4861 45 1 2.0441 6.6477 3.6817 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332260999.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:44 Heat of formation + Delta-G solvation = -58.271954 kcal Electronic energy + Delta-G solvation = -21486.046256 eV Core-core repulsion = 18308.996758 eV Total energy + Delta-G solvation = -3177.049498 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.05241 -39.40598 -37.14133 -36.34028 -34.77380 -32.95025 -31.78406 -30.16843 -29.55295 -28.10350 -26.20558 -24.89532 -23.93989 -22.34041 -21.45058 -20.85148 -19.50839 -19.03867 -18.05709 -17.21622 -16.73651 -16.14891 -15.93977 -15.72046 -15.44658 -15.16814 -15.05003 -14.69060 -14.62967 -14.33582 -13.88944 -13.62016 -13.40707 -13.23247 -13.03112 -12.84306 -12.77961 -12.60269 -12.39096 -12.23921 -12.12011 -12.11054 -11.76359 -11.74924 -11.72580 -11.57691 -11.35490 -10.92915 -10.55755 -10.26204 -9.77625 -8.99071 -7.95683 -5.23962 0.44611 1.46304 1.47330 1.57510 2.29023 2.36872 2.55747 3.37632 3.57172 3.62527 3.77536 3.89067 3.92048 4.16392 4.26247 4.34912 4.43291 4.46705 4.48547 4.51284 4.61734 4.66650 4.70146 4.75868 4.78589 4.85219 4.91386 5.03996 5.05428 5.09479 5.11348 5.14016 5.16923 5.26421 5.37497 5.38330 5.48036 5.54185 5.58402 5.62457 5.67958 6.27293 6.70054 7.33325 7.37183 8.10564 8.34054 9.28189 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.050332 B = 0.002458 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.167836 B =11389.572086 C =11441.642860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.028 4.028 4 C -0.115 4.115 5 C -0.239 4.239 6 C 0.534 3.466 7 O -0.583 6.583 8 N -0.708 5.708 9 C 0.148 3.852 10 H 0.069 0.931 11 C -0.121 4.121 12 C -0.109 4.109 13 C -0.087 4.087 14 H 0.074 0.926 15 C 0.156 3.844 16 N -0.745 5.745 17 C -0.245 4.245 18 H 0.074 0.926 19 C -0.078 4.078 20 N -0.969 5.969 21 Si 0.974 3.026 22 H -0.267 1.267 23 H -0.291 1.291 24 H -0.294 1.294 25 C -0.107 4.107 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.155 0.845 35 H 0.415 0.585 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.014 0.986 41 H 0.022 0.978 42 H 0.375 0.625 43 H 0.251 0.749 44 H 0.097 0.903 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.636 -26.588 -7.812 30.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.030 4.030 4 C -0.171 4.171 5 C -0.260 4.260 6 C 0.325 3.675 7 O -0.466 6.466 8 N -0.359 5.359 9 C 0.043 3.957 10 H 0.088 0.912 11 C -0.159 4.159 12 C -0.147 4.147 13 C -0.106 4.106 14 H 0.093 0.907 15 C 0.030 3.970 16 N -0.387 5.387 17 C -0.377 4.377 18 H 0.092 0.908 19 C -0.270 4.270 20 N -0.620 5.620 21 Si 0.803 3.197 22 H -0.191 1.191 23 H -0.218 1.218 24 H -0.221 1.221 25 C -0.146 4.146 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.172 0.828 35 H 0.252 0.748 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.032 0.968 41 H 0.040 0.960 42 H 0.207 0.793 43 H 0.060 0.940 44 H 0.115 0.885 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.709 -26.006 -8.516 29.765 hybrid contribution 0.603 1.290 0.555 1.528 sum -11.106 -24.717 -7.961 28.242 Atomic orbital electron populations 1.21720 0.93638 1.02913 1.02084 1.20818 0.96809 0.90762 1.04578 1.22820 0.89085 0.96499 0.94582 1.20947 1.02252 0.99275 0.94603 1.22502 1.09987 0.92885 1.00581 1.19158 0.76288 0.88764 0.83259 1.90776 1.53672 1.69198 1.32926 1.45857 1.70116 1.10838 1.09101 1.21641 0.94579 0.81430 0.98083 0.91230 1.22765 0.96028 0.96893 1.00257 1.22216 0.99113 0.96569 0.96819 1.21771 0.96316 0.93929 0.98592 0.90730 1.20975 0.90536 0.89155 0.96314 1.42578 1.07712 1.04994 1.83429 1.19688 0.94434 0.86007 1.37527 0.90814 1.25587 0.95444 1.02545 1.03457 1.69819 1.00479 1.35457 1.56281 0.85057 0.77669 0.80101 0.76844 1.19109 1.21848 1.22081 1.22310 0.98196 0.98319 0.95730 0.92680 0.92944 0.90527 0.89529 0.89180 0.91984 0.91074 0.92010 0.82754 0.74772 0.92761 0.90078 0.92463 0.93314 0.96771 0.96011 0.79347 0.94003 0.88458 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.90 71.98 0.71 -0.48 16 2 C -0.09 -0.81 6.03 29.85 0.18 -0.63 16 3 C -0.03 -0.43 5.36 -17.62 -0.09 -0.52 16 4 C -0.11 -2.17 8.34 71.24 0.59 -1.58 16 5 C -0.24 -3.82 9.63 23.43 0.23 -3.60 16 6 C 0.53 12.38 7.72 86.57 0.67 13.05 16 7 O -0.58 -18.28 12.82 -4.07 -0.05 -18.33 16 8 N -0.71 -13.85 5.18 -440.71 -2.28 -16.13 16 9 C 0.15 3.66 3.17 46.13 0.15 3.80 16 10 H 0.07 2.07 7.67 -2.39 -0.02 2.05 16 11 C -0.12 -3.26 6.56 31.89 0.21 -3.05 16 12 C -0.11 -3.56 6.02 31.67 0.19 -3.37 16 13 C -0.09 -2.74 2.97 -10.07 -0.03 -2.77 16 14 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 15 C 0.16 6.37 5.32 86.38 0.46 6.83 16 16 N -0.74 -38.85 5.43 -343.44 -1.87 -40.71 16 17 C -0.24 -14.06 9.99 84.04 0.84 -13.22 16 18 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 19 C -0.08 -4.60 5.50 84.87 0.47 -4.14 16 20 N -0.97 -60.46 13.06 21.65 0.28 -60.18 16 21 Si 0.97 47.13 29.55 68.60 2.03 49.16 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 25 C -0.11 -2.49 6.20 31.39 0.19 -2.30 16 26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.09 0.62 8.13 -2.38 -0.02 0.60 16 30 H 0.09 0.55 7.99 -2.39 -0.02 0.53 16 31 H 0.06 1.43 7.32 -2.39 -0.02 1.42 16 32 H 0.07 1.00 7.99 -2.39 -0.02 0.98 16 33 H 0.06 1.45 7.14 -2.39 -0.02 1.43 16 34 H 0.15 1.45 8.00 -2.91 -0.02 1.43 16 35 H 0.41 5.26 8.32 -92.71 -0.77 4.49 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 39 H 0.05 1.81 7.79 -2.39 -0.02 1.79 16 40 H 0.01 0.60 8.04 -2.39 -0.02 0.58 16 41 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.37 20.65 7.51 -92.71 -0.70 19.95 16 43 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 44 H 0.10 1.70 7.71 -2.39 -0.02 1.68 16 45 H 0.08 1.78 7.67 -2.39 -0.02 1.76 16 Total: -1.00 -71.61 362.61 2.37 -69.24 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: -0.50 Total: 28.92 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 4.76 Total: -11.97 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -3.87 Total: -117.02 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.05 Total: -18.33 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -71.61 2.37 -69.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332260999.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.970 kcal (2) G-P(sol) polarization free energy of solvation -71.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds