Wall clock time and date at job start Fri Apr 10 2020 17:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50701 * 109.46927 * 2 1 4 4 C 1.50700 * 120.00135 * 274.99729 * 3 2 1 5 5 C 1.32994 * 119.99940 * 95.00023 * 3 2 1 6 6 C 1.47107 * 119.99726 * 185.63455 * 5 3 2 7 7 O 1.21610 * 120.00069 * 354.73806 * 6 5 3 8 8 N 1.34783 * 119.99696 * 174.74356 * 6 5 3 9 9 C 1.46496 * 119.99591 * 179.97438 * 8 6 5 10 10 H 1.09004 * 110.01901 * 33.61219 * 9 8 6 11 11 C 1.54258 * 110.03605 * 272.16383 * 9 8 6 12 12 C 1.54887 * 104.19829 * 264.33106 * 11 9 8 13 13 C 1.54894 * 102.74681 * 322.05320 * 12 11 9 14 14 H 1.08998 * 110.60168 * 279.20685 * 13 12 11 15 15 C 1.53001 * 110.48491 * 156.62335 * 13 12 11 16 16 N 1.46502 * 109.47401 * 70.22478 * 15 13 12 17 17 C 1.36936 * 119.99978 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00082 * 0.02562 * 17 16 15 19 19 C 1.38806 * 119.99571 * 179.72523 * 17 16 15 20 20 N 1.31617 * 120.00472 * 0.28023 * 19 17 16 21 21 Si 1.86802 * 119.99767 * 180.27269 * 19 17 16 22 22 H 1.48500 * 109.46933 * 60.00240 * 21 19 17 23 23 H 1.48498 * 109.47410 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47178 * 300.00214 * 21 19 17 25 25 C 1.53878 * 110.02935 * 154.99975 * 9 8 6 26 26 H 1.09004 * 109.46628 * 60.00172 * 1 2 3 27 27 H 1.08998 * 109.46951 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47136 * 300.00322 * 1 2 3 29 29 H 1.08987 * 109.47313 * 239.99945 * 2 1 3 30 30 H 1.09004 * 109.46628 * 119.99827 * 2 1 3 31 31 H 1.08997 * 109.47143 * 238.23767 * 4 3 2 32 32 H 1.09007 * 109.46618 * 358.23547 * 4 3 2 33 33 H 1.09000 * 109.47028 * 118.23415 * 4 3 2 34 34 H 1.08002 * 120.00251 * 5.62630 * 5 3 2 35 35 H 0.97001 * 119.99671 * 359.97438 * 8 6 5 36 36 H 1.09005 * 110.48310 * 23.00659 * 11 9 8 37 37 H 1.08999 * 110.48848 * 145.51627 * 11 9 8 38 38 H 1.09002 * 110.75827 * 203.74245 * 12 11 9 39 39 H 1.08997 * 110.75940 * 80.36627 * 12 11 9 40 40 H 1.09002 * 109.47244 * 310.22456 * 15 13 12 41 41 H 1.09003 * 109.46893 * 190.22766 * 15 13 12 42 42 H 0.97001 * 119.99847 * 0.02562 * 16 15 13 43 43 H 0.97002 * 120.00375 * 179.97438 * 20 19 17 44 44 H 1.09004 * 110.03303 * 359.97438 * 25 9 8 45 45 H 1.09000 * 110.03144 * 238.57432 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1763 2.1692 -1.3001 5 6 2.3487 2.0143 1.1474 6 6 2.7200 3.4377 1.1613 7 8 2.8309 4.0474 0.1150 8 7 2.9373 4.0660 2.3338 9 6 3.3076 5.4833 2.3476 10 1 2.8195 6.0045 1.5240 11 6 4.8389 5.6306 2.2340 12 6 5.3170 5.7700 3.7007 13 6 4.2025 6.6331 4.3428 14 1 4.3547 7.6879 4.1142 15 6 4.1618 6.4152 5.8567 16 7 5.3500 7.0152 6.4686 17 6 5.5315 6.9452 7.8241 18 1 4.7989 6.4473 8.4420 19 6 6.6601 7.5087 8.4031 20 7 7.5531 8.1152 7.6501 21 14 6.9115 7.4066 10.2514 22 1 6.9696 5.9816 10.6650 23 1 8.1834 8.0806 10.6160 24 1 5.7809 8.0769 10.9425 25 6 2.9030 6.1207 3.6884 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.2101 2.4933 -1.4202 32 1 1.9021 1.5152 -2.1280 33 1 1.5210 3.0401 -1.2925 34 1 2.3328 1.4513 2.0689 35 1 2.8485 3.5796 3.1683 36 1 5.2743 4.7437 1.7736 37 1 5.0951 6.5216 1.6609 38 1 6.2776 6.2829 3.7468 39 1 5.3754 4.7939 4.1824 40 1 4.1440 5.3463 6.0696 41 1 3.2665 6.8823 6.2670 42 1 6.0078 7.4627 5.9137 43 1 8.3416 8.5094 8.0548 44 1 2.4307 5.3756 4.3286 45 1 2.2191 6.9517 3.5155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332261000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:49 Heat of formation + Delta-G solvation = -56.842905 kcal Electronic energy + Delta-G solvation = -21599.698369 eV Core-core repulsion = 18422.710840 eV Total energy + Delta-G solvation = -3176.987530 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.10115 -39.37168 -37.12019 -36.33797 -34.64028 -32.93769 -31.78271 -30.15499 -29.56262 -28.16901 -26.19969 -24.93168 -23.89977 -22.46339 -21.22456 -20.78270 -19.49927 -19.03613 -17.99181 -17.24993 -16.64454 -16.48012 -15.79770 -15.69572 -15.45059 -15.25226 -14.96522 -14.82457 -14.51604 -14.22601 -13.97013 -13.54077 -13.40832 -13.14629 -13.03188 -12.75580 -12.62374 -12.60535 -12.46144 -12.24963 -12.21105 -12.07263 -11.85665 -11.73951 -11.60798 -11.53565 -11.46361 -10.89094 -10.53722 -10.26544 -9.77785 -8.97492 -7.93848 -5.22360 0.44447 1.47336 1.50617 1.56745 2.33020 2.36688 2.57186 3.39303 3.59272 3.61147 3.76492 3.90620 3.92626 4.16895 4.27611 4.34968 4.45120 4.46379 4.51487 4.55311 4.61164 4.67533 4.70269 4.77268 4.79466 4.86166 4.93109 5.02047 5.05267 5.10403 5.11122 5.15192 5.18471 5.24080 5.36809 5.37868 5.47833 5.55499 5.59377 5.61637 5.71450 6.28513 6.68498 7.34562 7.35367 8.12556 8.35023 9.29702 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032253 B = 0.002686 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.941183 B =10423.249261 C =10844.026220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.026 4.026 4 C -0.113 4.113 5 C -0.243 4.243 6 C 0.536 3.464 7 O -0.581 6.581 8 N -0.711 5.711 9 C 0.149 3.851 10 H 0.081 0.919 11 C -0.124 4.124 12 C -0.106 4.106 13 C -0.091 4.091 14 H 0.067 0.933 15 C 0.160 3.840 16 N -0.746 5.746 17 C -0.245 4.245 18 H 0.076 0.924 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.974 3.026 22 H -0.277 1.277 23 H -0.296 1.296 24 H -0.277 1.277 25 C -0.109 4.109 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.148 0.852 35 H 0.411 0.589 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.023 0.977 41 H 0.019 0.981 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.086 0.914 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.815 -16.246 -16.186 27.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.028 4.028 4 C -0.169 4.169 5 C -0.264 4.264 6 C 0.328 3.672 7 O -0.463 6.463 8 N -0.362 5.362 9 C 0.044 3.956 10 H 0.099 0.901 11 C -0.162 4.162 12 C -0.144 4.144 13 C -0.110 4.110 14 H 0.085 0.915 15 C 0.034 3.966 16 N -0.388 5.388 17 C -0.377 4.377 18 H 0.094 0.906 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.803 3.197 22 H -0.203 1.203 23 H -0.223 1.223 24 H -0.204 1.204 25 C -0.148 4.148 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.166 0.834 35 H 0.247 0.753 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.041 0.959 41 H 0.037 0.963 42 H 0.205 0.795 43 H 0.059 0.941 44 H 0.104 0.896 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.805 -15.855 -16.725 27.391 hybrid contribution 0.889 0.413 1.319 1.644 sum -13.916 -15.442 -15.405 25.873 Atomic orbital electron populations 1.21715 0.93520 1.02908 1.02131 1.20826 0.96929 0.90896 1.04464 1.22820 0.88952 0.96418 0.94654 1.20946 1.02326 0.99318 0.94324 1.22516 1.10173 0.93230 1.00487 1.19062 0.76297 0.88606 0.83262 1.90752 1.53853 1.69066 1.32646 1.46059 1.69914 1.11294 1.08960 1.21434 0.94421 0.81433 0.98281 0.90082 1.22691 0.95453 1.01749 0.96326 1.22386 0.97689 0.99413 0.94868 1.22052 0.95590 0.99598 0.93779 0.91492 1.20862 0.88779 0.95472 0.91484 1.42590 1.24181 1.67618 1.04432 1.19621 1.03898 1.28900 0.85276 0.90623 1.25590 0.97439 1.01650 1.02366 1.69815 1.12715 1.43814 1.35838 0.85198 0.76658 0.77713 0.80119 1.20303 1.22255 1.20351 1.22344 0.96723 1.01228 0.94468 0.92687 0.90592 0.92774 0.89420 0.89556 0.91916 0.91023 0.91715 0.83388 0.75272 0.92156 0.90943 0.93359 0.91932 0.95860 0.96288 0.79509 0.94053 0.89557 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.90 71.99 0.71 -0.59 16 2 C -0.09 -0.93 6.03 29.85 0.18 -0.75 16 3 C -0.03 -0.42 5.36 -17.62 -0.09 -0.52 16 4 C -0.11 -2.10 8.34 71.24 0.59 -1.51 16 5 C -0.24 -4.27 9.63 23.43 0.23 -4.05 16 6 C 0.54 12.72 7.73 86.57 0.67 13.39 16 7 O -0.58 -17.57 12.76 -4.06 -0.05 -17.62 16 8 N -0.71 -15.00 5.03 -442.70 -2.22 -17.22 16 9 C 0.15 3.56 3.25 45.71 0.15 3.71 16 10 H 0.08 2.09 7.56 -2.39 -0.02 2.07 16 11 C -0.12 -3.29 6.54 31.67 0.21 -3.09 16 12 C -0.11 -3.28 6.19 31.89 0.20 -3.08 16 13 C -0.09 -2.84 2.89 -9.72 -0.03 -2.87 16 14 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 15 C 0.16 6.25 5.54 86.38 0.48 6.72 16 16 N -0.75 -38.16 5.49 -343.45 -1.89 -40.05 16 17 C -0.25 -13.79 9.99 84.03 0.84 -12.95 16 18 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 19 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 20 N -0.97 -60.18 13.06 21.65 0.28 -59.90 16 21 Si 0.97 46.35 29.55 68.60 2.03 48.37 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 23 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 25 C -0.11 -2.54 6.14 31.32 0.19 -2.35 16 26 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.09 0.70 8.13 -2.39 -0.02 0.68 16 30 H 0.09 0.69 7.99 -2.39 -0.02 0.67 16 31 H 0.06 1.42 7.32 -2.39 -0.02 1.40 16 32 H 0.07 0.98 7.99 -2.38 -0.02 0.96 16 33 H 0.06 1.45 7.14 -2.39 -0.02 1.43 16 34 H 0.15 1.82 8.00 -2.91 -0.02 1.80 16 35 H 0.41 6.83 8.30 -92.71 -0.77 6.06 16 36 H 0.06 1.66 8.04 -2.38 -0.02 1.64 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 1.97 7.97 -2.39 -0.02 1.95 16 40 H 0.02 0.90 8.02 -2.39 -0.02 0.88 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 42 H 0.37 20.43 7.64 -92.71 -0.71 19.73 16 43 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 44 H 0.09 1.79 7.32 -2.38 -0.02 1.78 16 45 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -69.05 362.91 2.42 -66.63 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: -0.51 Total: 31.81 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 4.79 Total: -12.01 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -3.83 Total: -117.17 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.05 Total: -17.62 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.37 kcal Total: -69.05 2.42 -66.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332261000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.782 kcal (2) G-P(sol) polarization free energy of solvation -69.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds