Wall clock time and date at job start Fri Apr 10 2020 17:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47427 * 2 1 4 4 C 1.53004 * 109.47013 * 239.99612 * 2 1 3 5 5 C 1.52998 * 109.46887 * 119.99881 * 2 1 3 6 6 H 1.09002 * 112.74062 * 308.80201 * 5 2 1 7 7 C 1.53499 * 113.46627 * 177.98233 * 5 2 1 8 8 C 1.53760 * 83.25978 * 218.98386 * 7 5 2 9 9 N 1.47067 * 87.88745 * 26.23654 * 8 7 5 10 10 C 1.34781 * 136.05766 * 152.96269 * 9 8 7 11 11 O 1.21593 * 119.99674 * 184.59206 * 10 9 8 12 12 N 1.34771 * 119.99817 * 4.58850 * 10 9 8 13 13 C 1.46500 * 119.99937 * 174.97679 * 12 10 9 14 14 C 1.52998 * 109.47176 * 185.00032 * 13 12 10 15 15 C 1.50705 * 115.54959 * 281.52130 * 14 13 12 16 16 H 1.08000 * 119.99453 * 143.29757 * 15 14 13 17 17 C 1.37876 * 119.99891 * 323.29779 * 15 14 13 18 18 N 1.31507 * 120.00379 * 2.37239 * 17 15 14 19 19 Si 1.86800 * 119.99613 * 182.37300 * 17 15 14 20 20 H 1.48499 * 109.47238 * 89.99968 * 19 17 15 21 21 H 1.48500 * 109.47285 * 209.99824 * 19 17 15 22 22 H 1.48505 * 109.47371 * 329.99890 * 19 17 15 23 23 C 1.52998 * 117.49836 * 135.81787 * 14 13 12 24 24 C 1.52990 * 117.49977 * 67.19576 * 14 13 12 25 25 H 1.09007 * 109.46820 * 306.13719 * 1 2 3 26 26 H 1.09002 * 109.46682 * 66.12732 * 1 2 3 27 27 H 1.08993 * 109.47540 * 186.13285 * 1 2 3 28 28 H 1.08998 * 109.46944 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46973 * 299.99687 * 3 2 1 30 30 H 1.09000 * 109.47217 * 60.00019 * 3 2 1 31 31 H 1.08997 * 109.46925 * 300.00368 * 4 2 1 32 32 H 1.08998 * 109.46766 * 60.00229 * 4 2 1 33 33 H 1.09004 * 109.46883 * 179.97438 * 4 2 1 34 34 H 1.09000 * 114.20983 * 332.73749 * 7 5 2 35 35 H 1.08998 * 114.20606 * 105.56835 * 7 5 2 36 36 H 1.09009 * 113.46406 * 271.50530 * 8 7 5 37 37 H 1.09002 * 113.55419 * 140.98766 * 8 7 5 38 38 H 0.96998 * 120.00188 * 354.70219 * 12 10 9 39 39 H 1.08999 * 109.47018 * 305.00138 * 13 12 10 40 40 H 1.09005 * 109.47213 * 64.99974 * 13 12 10 41 41 H 0.97002 * 120.00386 * 185.00029 * 18 17 15 42 42 H 1.09001 * 117.50137 * 359.97438 * 23 14 13 43 43 H 1.09005 * 117.50089 * 145.01730 * 23 14 13 44 44 H 1.09005 * 117.50179 * 214.98185 * 24 14 13 45 45 H 1.09001 * 117.50247 * 359.97261 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 1.5864 -0.3463 2.1668 7 6 3.5704 -0.8178 1.3174 8 6 3.2761 -2.2210 1.8728 9 7 2.0044 -2.1871 1.1349 10 6 1.1704 -3.0985 0.5960 11 8 0.2026 -2.7338 -0.0434 12 7 1.4093 -4.4139 0.7658 13 6 0.4458 -5.4026 0.2756 14 6 0.8903 -6.8031 0.7022 15 6 1.9952 -7.4132 -0.1212 16 1 2.7496 -8.0225 0.3544 17 6 2.0431 -7.1937 -1.4815 18 7 1.1518 -6.4140 -2.0535 19 14 3.3739 -8.0037 -2.5120 20 1 2.8929 -9.3238 -2.9928 21 1 3.6933 -7.1392 -3.6764 22 1 4.5936 -8.1922 -1.6861 23 6 -0.1794 -7.7449 1.2584 24 6 0.8604 -7.1291 2.1967 25 1 -0.3633 0.6061 0.8300 26 1 -0.3633 0.4159 -0.9398 27 1 -0.3634 -1.0217 0.1098 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9564 0.8900 31 1 1.6766 -1.7490 -1.2492 32 1 1.6766 -0.2075 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 4.0623 -0.8127 0.3447 35 1 4.0292 -0.1413 2.0384 36 1 3.1493 -2.2416 2.9553 37 1 3.9659 -2.9850 1.5141 38 1 2.2210 -4.7062 1.2091 39 1 -0.5378 -5.1902 0.6946 40 1 0.3957 -5.3529 -0.8122 41 1 1.1405 -6.3168 -3.0186 42 1 -1.1998 -7.3668 1.3209 43 1 -0.0843 -8.8063 1.0288 44 1 1.6397 -7.7852 2.5845 45 1 0.5244 -6.3457 2.8761 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340234258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:04 Heat of formation + Delta-G solvation = 34.888135 kcal Electronic energy + Delta-G solvation = -23517.597523 eV Core-core repulsion = 20344.587750 eV Total energy + Delta-G solvation = -3173.009774 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.60955 -37.93827 -36.48445 -35.32481 -32.79135 -32.27531 -29.32578 -26.95599 -26.90606 -25.87009 -25.53603 -24.77274 -21.80040 -21.21899 -19.73520 -19.20446 -18.28470 -17.31020 -16.17403 -15.75305 -15.49957 -14.88039 -14.35282 -14.05418 -14.00768 -13.73900 -13.28093 -13.07179 -12.73786 -12.66490 -12.29270 -12.01133 -11.93887 -11.76286 -11.52329 -11.35287 -11.26684 -11.10712 -11.01406 -10.63498 -10.51152 -10.42695 -10.39903 -10.24372 -9.94246 -9.58212 -9.01368 -8.94034 -8.85793 -8.35122 -8.26485 -7.71139 -5.89252 -4.20030 3.08410 3.23189 3.31348 3.32758 3.99156 4.29976 4.42826 4.65817 4.92012 5.00027 5.06885 5.15354 5.23303 5.38341 5.50147 5.54080 5.62673 5.70182 5.73007 5.82726 5.97475 6.02163 6.06521 6.10451 6.18443 6.21491 6.35054 6.42278 6.46306 6.52804 6.55583 6.62625 6.78370 6.86164 6.92706 7.03774 7.14040 7.27341 7.60023 7.78693 7.97505 8.20149 8.48897 8.76938 8.93052 9.46944 9.52174 10.89459 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019079 B = 0.005311 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.210889 B = 5270.757797 C = 5704.149617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.065 4.065 3 C -0.137 4.137 4 C -0.140 4.140 5 C 0.164 3.836 6 H 0.081 0.919 7 C -0.154 4.154 8 C 0.098 3.902 9 N -0.664 5.664 10 C 0.728 3.272 11 O -0.584 6.584 12 N -0.714 5.714 13 C 0.141 3.859 14 C 0.037 3.963 15 C -0.487 4.487 16 H 0.060 0.940 17 C 0.071 3.929 18 N -0.872 5.872 19 Si 0.898 3.102 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.196 4.196 24 C -0.210 4.210 25 H 0.036 0.964 26 H 0.043 0.957 27 H 0.110 0.890 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.388 0.612 39 H 0.019 0.981 40 H 0.154 0.846 41 H 0.265 0.735 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.739 11.944 6.408 14.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.066 4.066 3 C -0.195 4.195 4 C -0.197 4.197 5 C 0.060 3.940 6 H 0.098 0.902 7 C -0.192 4.192 8 C -0.025 4.025 9 N -0.406 5.406 10 C 0.432 3.568 11 O -0.465 6.465 12 N -0.364 5.364 13 C 0.019 3.981 14 C 0.036 3.964 15 C -0.524 4.524 16 H 0.078 0.922 17 C -0.131 4.131 18 N -0.510 5.510 19 Si 0.726 3.274 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.234 4.234 24 C -0.248 4.248 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.128 0.872 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.220 0.780 39 H 0.037 0.963 40 H 0.170 0.830 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.820 12.088 5.634 13.873 hybrid contribution 0.969 -0.661 -0.067 1.175 sum 4.789 11.427 5.567 13.584 Atomic orbital electron populations 1.22363 0.93903 1.06303 0.99767 1.20580 0.96834 0.94258 0.94916 1.21825 1.00628 0.95577 1.01426 1.21937 0.99489 1.02719 0.95584 1.22480 0.93950 0.80078 0.97513 0.90169 1.23604 0.96257 0.96925 1.02415 1.22837 0.85646 0.97481 0.96582 1.48806 1.25139 1.06723 1.59888 1.15348 0.81260 0.80485 0.79727 1.90662 1.30974 1.78612 1.46207 1.45141 1.25685 1.03296 1.62316 1.21943 0.86403 0.83493 1.06276 1.19286 0.95942 0.92080 0.89067 1.20565 1.09520 1.30318 0.91999 0.92178 1.24994 0.95995 0.94163 0.97991 1.69259 1.35467 1.35907 1.10370 0.86487 0.81801 0.79263 0.79861 1.20512 1.21093 1.19883 1.22945 0.93942 0.99455 1.07092 1.22845 1.02823 1.03622 0.95501 0.94534 0.93815 0.87226 0.92800 0.92738 0.93029 0.90244 0.93701 0.93711 0.88536 0.90020 0.90685 0.90726 0.77956 0.96313 0.83029 0.92394 0.91481 0.90219 0.90708 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 8.31 37.16 0.31 -2.30 16 2 C -0.07 -0.90 0.58 -154.51 -0.09 -0.99 16 3 C -0.14 -1.46 8.30 37.16 0.31 -1.16 16 4 C -0.14 -2.22 7.80 37.16 0.29 -1.93 16 5 C 0.16 2.16 3.29 -72.38 -0.24 1.92 16 6 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 7 C -0.15 -1.59 6.95 -26.08 -0.18 -1.77 16 8 C 0.10 1.18 8.30 -8.36 -0.07 1.11 16 9 N -0.66 -10.71 3.01 -182.99 -0.55 -11.26 16 10 C 0.73 15.13 7.55 -86.92 -0.66 14.48 16 11 O -0.58 -13.79 11.73 5.28 0.06 -13.73 16 12 N -0.71 -15.37 5.54 -65.22 -0.36 -15.73 16 13 C 0.14 3.45 5.30 -4.04 -0.02 3.43 16 14 C 0.04 0.89 1.83 -155.67 -0.29 0.61 16 15 C -0.49 -12.61 9.05 -34.44 -0.31 -12.92 16 16 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 17 C 0.07 1.85 5.38 -17.82 -0.10 1.76 16 18 N -0.87 -23.77 10.13 55.43 0.56 -23.21 16 19 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 C -0.20 -4.37 9.88 -26.74 -0.26 -4.63 16 24 C -0.21 -4.43 9.93 -26.74 -0.27 -4.69 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.11 2.14 4.38 -51.94 -0.23 1.92 16 28 H 0.05 0.51 7.50 -51.93 -0.39 0.12 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 1.59 4.87 -51.93 -0.25 1.34 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.64 6.37 -51.93 -0.33 0.31 16 34 H 0.10 1.05 6.30 -51.93 -0.33 0.72 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.39 7.84 8.21 -40.82 -0.33 7.51 16 39 H 0.02 0.46 7.97 -51.93 -0.41 0.05 16 40 H 0.15 4.23 4.61 -52.28 -0.24 3.99 16 41 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 42 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 43 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 44 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 345.86 15.07 5.21 5.21 Total: -1.00 -28.49 345.86 -9.23 -37.72 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -7.56 Total: 12.68 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.57 Total: -7.10 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.35 Total: -50.20 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.06 Total: -13.73 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.49 -9.23 -37.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340234258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.608 kcal (2) G-P(sol) polarization free energy of solvation -28.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds