Wall clock time and date at job start Fri Apr 10 2020 17:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50701 * 119.99867 * 2 1 4 4 C 1.53001 * 109.47465 * 125.00012 * 3 2 1 5 5 C 1.52997 * 109.47203 * 175.32352 * 4 3 2 6 6 H 1.08997 * 109.87334 * 55.36954 * 5 4 3 7 7 C 1.54319 * 109.88470 * 294.35005 * 5 4 3 8 8 C 1.55149 * 102.94266 * 218.39384 * 7 5 4 9 9 C 1.54912 * 101.58588 * 35.50090 * 8 7 5 10 10 N 1.47022 * 109.87841 * 176.54077 * 5 4 3 11 11 C 1.34773 * 125.65290 * 298.33547 * 10 5 4 12 12 O 1.21596 * 120.00026 * 4.88424 * 11 10 5 13 13 N 1.34779 * 120.00166 * 184.88132 * 11 10 5 14 14 C 1.46505 * 119.99948 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47226 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47162 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46988 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00438 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99980 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99861 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99861 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.46808 * 89.99836 * 21 19 17 23 23 H 1.48500 * 109.46766 * 209.99639 * 21 19 17 24 24 H 1.48500 * 109.46963 * 329.99574 * 21 19 17 25 25 H 1.07993 * 119.99953 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.99543 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00129 * 179.72435 * 2 1 3 28 28 H 1.09002 * 109.47076 * 244.99939 * 3 2 1 29 29 H 1.09005 * 109.47321 * 4.99874 * 3 2 1 30 30 H 1.09002 * 109.46583 * 295.32210 * 4 3 2 31 31 H 1.08999 * 109.46748 * 55.31678 * 4 3 2 32 32 H 1.08999 * 110.71846 * 336.75659 * 7 5 4 33 33 H 1.08997 * 110.71882 * 99.84787 * 7 5 4 34 34 H 1.09005 * 111.00726 * 153.57630 * 8 7 5 35 35 H 1.08997 * 111.00436 * 277.42569 * 8 7 5 36 36 H 1.08995 * 110.36548 * 81.82635 * 9 8 7 37 37 H 1.08995 * 110.36731 * 204.04539 * 9 8 7 38 38 H 0.96991 * 120.00270 * 0.02562 * 13 11 10 39 39 H 1.09008 * 109.46806 * 299.99993 * 14 13 11 40 40 H 1.08996 * 109.47028 * 59.99415 * 14 13 11 41 41 H 1.08996 * 109.46822 * 299.99956 * 15 14 13 42 42 H 1.09003 * 109.47410 * 59.99498 * 15 14 13 43 43 H 1.08996 * 109.47466 * 299.99867 * 16 15 14 44 44 H 1.09002 * 109.46845 * 60.00100 * 16 15 14 45 45 H 0.97004 * 119.99937 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3332 1.1816 5 6 3.8820 2.6057 1.1154 6 1 3.2334 3.4808 1.0767 7 6 4.7885 2.5686 -0.1329 8 6 6.1113 3.1969 0.3793 9 6 6.1631 2.6693 1.8349 10 7 4.7612 2.6828 2.2912 11 6 4.3534 2.7544 3.5738 12 8 3.1702 2.6695 3.8411 13 7 5.2569 2.9200 4.5600 14 6 4.8136 2.9973 5.9542 15 6 6.0278 3.1856 6.8658 16 6 5.5647 3.2669 8.3218 17 6 6.7608 3.4518 9.2197 18 1 7.7520 3.5063 8.7945 19 6 6.5895 3.5525 10.5842 20 7 7.6333 3.7143 11.3677 21 14 4.8749 3.4589 11.3197 22 1 4.5472 2.0448 11.6328 23 1 4.8260 4.2660 12.5652 24 1 3.8887 3.9916 10.3455 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5399 -0.9353 -0.0004 27 1 1.8501 -0.9353 0.0045 28 1 2.6213 1.4026 -0.9314 29 1 1.3586 2.1317 0.0895 30 1 2.4723 1.3194 2.1150 31 1 3.6865 0.4604 1.1371 32 1 4.9509 1.5419 -0.4611 33 1 4.3608 3.1661 -0.9380 34 1 6.9637 2.8372 -0.1971 35 1 6.0600 4.2855 0.3600 36 1 6.5593 1.6542 1.8566 37 1 6.7720 3.3268 2.4553 38 1 6.2007 2.9881 4.3468 39 1 4.1355 3.8424 6.0735 40 1 4.2966 2.0760 6.2226 41 1 6.7061 2.3408 6.7465 42 1 6.5444 4.1071 6.5972 43 1 4.8866 4.1119 8.4407 44 1 5.0479 2.3456 8.5906 45 1 7.5128 3.7847 12.3276 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353263455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:07 Heat of formation + Delta-G solvation = -31.968962 kcal Electronic energy + Delta-G solvation = -21628.236595 eV Core-core repulsion = 18452.327680 eV Total energy + Delta-G solvation = -3175.908915 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.44109 -38.05346 -35.75540 -35.41030 -33.35679 -32.12973 -31.57702 -30.93820 -27.65921 -27.03548 -24.34080 -22.96575 -22.32984 -21.00999 -20.53666 -20.09211 -19.27245 -17.93768 -16.78169 -16.60752 -15.64668 -15.60073 -15.14464 -14.68821 -14.33431 -14.16978 -13.98245 -13.89714 -13.48581 -13.14878 -12.86906 -12.67352 -12.34401 -12.23842 -11.92648 -11.85608 -11.69116 -11.49001 -11.26719 -11.03707 -10.99410 -10.87153 -10.68775 -10.17967 -9.97242 -9.79756 -9.66781 -9.52914 -9.21506 -8.95453 -8.54509 -8.48176 -6.05363 -4.03898 2.05099 2.64536 3.31859 3.32668 3.40066 3.44969 4.00405 4.25144 4.37346 4.45731 4.49449 4.67925 4.82139 4.97177 5.03868 5.13195 5.19181 5.26423 5.28924 5.40252 5.42227 5.47366 5.55884 5.57322 5.63258 5.70016 5.73054 5.85668 5.99836 6.06143 6.12080 6.29137 6.39827 6.45883 6.49009 6.55005 6.74597 6.85467 7.10157 7.25210 7.38511 7.76902 8.07926 8.51288 8.73010 8.98484 9.57048 11.07871 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022960 B = 0.002941 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.194998 B = 9517.444201 C =10538.019986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.091 4.091 4 C -0.128 4.128 5 C 0.158 3.842 6 H 0.072 0.928 7 C -0.129 4.129 8 C -0.132 4.132 9 C 0.098 3.902 10 N -0.638 5.638 11 C 0.719 3.281 12 O -0.588 6.588 13 N -0.740 5.740 14 C 0.133 3.867 15 C -0.112 4.112 16 C -0.011 4.011 17 C -0.521 4.521 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.904 5.904 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.394 0.606 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.019 0.981 44 H 0.015 0.985 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.266 -4.009 -27.727 28.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.169 4.169 3 C -0.128 4.128 4 C -0.166 4.166 5 C 0.054 3.946 6 H 0.090 0.910 7 C -0.167 4.167 8 C -0.170 4.170 9 C -0.025 4.025 10 N -0.377 5.377 11 C 0.421 3.579 12 O -0.466 6.466 13 N -0.395 5.395 14 C 0.010 3.990 15 C -0.150 4.150 16 C -0.049 4.049 17 C -0.559 4.559 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.543 5.543 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.188 1.188 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.124 0.876 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.228 0.772 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.037 0.963 44 H 0.033 0.967 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.123 -4.031 -27.200 28.404 hybrid contribution -0.265 -0.089 0.508 0.580 sum -7.388 -4.121 -26.692 28.000 Atomic orbital electron populations 1.23850 0.96030 1.01779 1.01721 1.22952 0.96045 0.98482 0.99397 1.20731 0.98139 0.95494 0.98463 1.21962 0.97840 0.97069 0.99779 1.21369 0.91396 0.98289 0.83555 0.90985 1.22751 0.95287 1.01990 0.96627 1.22751 0.98059 1.01173 0.95020 1.22262 0.83595 1.01029 0.95618 1.47649 1.07050 1.78799 1.04183 1.15510 0.85188 0.77968 0.79236 1.90902 1.15470 1.58363 1.81915 1.45373 1.09247 1.78188 1.06695 1.21514 0.98259 1.01672 0.77583 1.21699 0.95534 1.01466 0.96337 1.19499 0.97588 0.96668 0.91126 1.21099 0.93684 1.50086 0.91065 0.91031 1.25030 0.96772 0.94482 0.97218 1.69913 1.29619 1.50357 1.04364 0.86773 0.85375 0.78414 0.78738 1.20242 1.21391 1.18848 0.88609 0.88671 0.87571 0.91015 0.91462 0.89735 0.91952 0.90339 0.90028 0.89820 0.90504 0.91509 0.90837 0.77212 0.91992 0.91996 0.92203 0.92182 0.96271 0.96713 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.64 14.32 29.01 0.42 -1.23 16 2 C -0.15 -1.29 9.52 -36.03 -0.34 -1.63 16 3 C -0.09 -0.75 5.56 -27.88 -0.15 -0.90 16 4 C -0.13 -1.33 4.65 -26.73 -0.12 -1.45 16 5 C 0.16 1.56 2.94 -66.96 -0.20 1.37 16 6 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 7 C -0.13 -0.81 5.46 -24.90 -0.14 -0.95 16 8 C -0.13 -0.80 7.08 -24.58 -0.17 -0.97 16 9 C 0.10 0.81 6.67 -2.53 -0.02 0.79 16 10 N -0.64 -7.51 3.06 -168.70 -0.52 -8.03 16 11 C 0.72 11.33 8.31 -86.92 -0.72 10.61 16 12 O -0.59 -11.49 15.16 5.28 0.08 -11.41 16 13 N -0.74 -11.00 5.52 -65.22 -0.36 -11.36 16 14 C 0.13 2.31 5.67 -4.04 -0.02 2.28 16 15 C -0.11 -2.14 5.27 -26.74 -0.14 -2.28 16 16 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 17 C -0.52 -14.79 9.66 -34.44 -0.33 -15.12 16 18 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 19 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 20 N -0.90 -27.90 13.96 55.43 0.77 -27.12 16 21 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 25 H 0.10 0.76 7.84 -52.49 -0.41 0.35 16 26 H 0.09 0.69 8.06 -52.49 -0.42 0.27 16 27 H 0.11 0.83 8.06 -52.49 -0.42 0.41 16 28 H 0.07 0.47 7.28 -51.93 -0.38 0.09 16 29 H 0.07 0.57 7.79 -51.93 -0.40 0.17 16 30 H 0.08 1.19 6.59 -51.93 -0.34 0.85 16 31 H 0.06 0.63 8.06 -51.93 -0.42 0.21 16 32 H 0.08 0.45 7.79 -51.93 -0.40 0.04 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.56 7.12 -51.93 -0.37 0.19 16 38 H 0.39 4.85 6.87 -40.82 -0.28 4.57 16 39 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 44 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 360.36 15.07 5.43 5.43 Total: -1.00 -33.46 360.36 -9.44 -42.90 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -8.01 Total: 0.34 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -2.16 Total: -8.01 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.10 Total: -46.51 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.08 Total: -11.41 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.46 -9.44 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353263455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.927 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds