Wall clock time and date at job start Fri Apr 10 2020 17:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50701 * 119.99867 * 2 1 4 4 C 1.53001 * 109.47465 * 125.00012 * 3 2 1 5 5 C 1.52997 * 109.47203 * 175.32352 * 4 3 2 6 6 H 1.08997 * 109.87334 * 55.36954 * 5 4 3 7 7 C 1.54319 * 109.88470 * 294.35005 * 5 4 3 8 8 C 1.55149 * 102.94266 * 218.39384 * 7 5 4 9 9 C 1.54912 * 101.58588 * 35.50090 * 8 7 5 10 10 N 1.47022 * 109.87841 * 176.54077 * 5 4 3 11 11 C 1.34773 * 125.65290 * 298.33547 * 10 5 4 12 12 O 1.21596 * 120.00026 * 4.88424 * 11 10 5 13 13 N 1.34779 * 120.00166 * 184.88132 * 11 10 5 14 14 C 1.46505 * 119.99948 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47226 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47162 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46988 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00438 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99980 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99861 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99861 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.46808 * 89.99836 * 21 19 17 23 23 H 1.48500 * 109.46766 * 209.99639 * 21 19 17 24 24 H 1.48500 * 109.46963 * 329.99574 * 21 19 17 25 25 H 1.07993 * 119.99953 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.99543 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00129 * 179.72435 * 2 1 3 28 28 H 1.09002 * 109.47076 * 244.99939 * 3 2 1 29 29 H 1.09005 * 109.47321 * 4.99874 * 3 2 1 30 30 H 1.09002 * 109.46583 * 295.32210 * 4 3 2 31 31 H 1.08999 * 109.46748 * 55.31678 * 4 3 2 32 32 H 1.08999 * 110.71846 * 336.75659 * 7 5 4 33 33 H 1.08997 * 110.71882 * 99.84787 * 7 5 4 34 34 H 1.09005 * 111.00726 * 153.57630 * 8 7 5 35 35 H 1.08997 * 111.00436 * 277.42569 * 8 7 5 36 36 H 1.08995 * 110.36548 * 81.82635 * 9 8 7 37 37 H 1.08995 * 110.36731 * 204.04539 * 9 8 7 38 38 H 0.96991 * 120.00270 * 0.02562 * 13 11 10 39 39 H 1.09008 * 109.46806 * 299.99993 * 14 13 11 40 40 H 1.08996 * 109.47028 * 59.99415 * 14 13 11 41 41 H 1.08996 * 109.46822 * 299.99956 * 15 14 13 42 42 H 1.09003 * 109.47410 * 59.99498 * 15 14 13 43 43 H 1.08996 * 109.47466 * 299.99867 * 16 15 14 44 44 H 1.09002 * 109.46845 * 60.00100 * 16 15 14 45 45 H 0.97004 * 119.99937 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3332 1.1816 5 6 3.8820 2.6057 1.1154 6 1 3.2334 3.4808 1.0767 7 6 4.7885 2.5686 -0.1329 8 6 6.1113 3.1969 0.3793 9 6 6.1631 2.6693 1.8349 10 7 4.7612 2.6828 2.2912 11 6 4.3534 2.7544 3.5738 12 8 3.1702 2.6695 3.8411 13 7 5.2569 2.9200 4.5600 14 6 4.8136 2.9973 5.9542 15 6 6.0278 3.1856 6.8658 16 6 5.5647 3.2669 8.3218 17 6 6.7608 3.4518 9.2197 18 1 7.7520 3.5063 8.7945 19 6 6.5895 3.5525 10.5842 20 7 7.6333 3.7143 11.3677 21 14 4.8749 3.4589 11.3197 22 1 4.5472 2.0448 11.6328 23 1 4.8260 4.2660 12.5652 24 1 3.8887 3.9916 10.3455 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5399 -0.9353 -0.0004 27 1 1.8501 -0.9353 0.0045 28 1 2.6213 1.4026 -0.9314 29 1 1.3586 2.1317 0.0895 30 1 2.4723 1.3194 2.1150 31 1 3.6865 0.4604 1.1371 32 1 4.9509 1.5419 -0.4611 33 1 4.3608 3.1661 -0.9380 34 1 6.9637 2.8372 -0.1971 35 1 6.0600 4.2855 0.3600 36 1 6.5593 1.6542 1.8566 37 1 6.7720 3.3268 2.4553 38 1 6.2007 2.9881 4.3468 39 1 4.1355 3.8424 6.0735 40 1 4.2966 2.0760 6.2226 41 1 6.7061 2.3408 6.7465 42 1 6.5444 4.1071 6.5972 43 1 4.8866 4.1119 8.4407 44 1 5.0479 2.3456 8.5906 45 1 7.5128 3.7847 12.3276 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353263455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:06 Heat of formation + Delta-G solvation = -52.552261 kcal Electronic energy + Delta-G solvation = -21629.129154 eV Core-core repulsion = 18452.327680 eV Total energy + Delta-G solvation = -3176.801474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.45081 -39.04309 -36.93548 -36.45854 -35.15172 -33.58335 -32.37105 -32.18976 -28.88498 -28.21325 -25.38668 -24.32710 -23.20964 -22.21636 -21.80157 -20.79216 -20.37789 -19.11505 -18.69763 -17.59109 -16.86750 -16.43980 -16.31935 -16.14577 -15.59952 -15.40933 -15.01202 -14.81293 -14.64338 -14.28293 -14.00463 -13.84177 -13.66132 -13.45716 -12.99342 -12.95380 -12.73625 -12.69296 -12.32329 -12.06328 -11.93907 -11.86927 -11.78030 -11.61302 -11.55590 -11.43349 -11.33481 -11.13379 -10.76527 -10.24153 -10.19646 -9.47009 -8.29813 -6.33506 1.36614 1.38099 1.38520 1.50240 1.61997 2.11344 2.36108 3.01845 3.05924 3.65897 3.69560 3.82318 4.07944 4.13182 4.14278 4.19797 4.30571 4.38534 4.46073 4.48929 4.53831 4.62652 4.76453 4.81006 4.86840 4.88201 4.98961 4.99444 5.02820 5.06896 5.14012 5.22573 5.28212 5.38435 5.41375 5.51125 5.52206 5.54820 5.64897 5.75750 5.89462 6.06641 6.27064 6.74086 6.97926 7.31241 7.54898 8.86536 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022960 B = 0.002941 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.194998 B = 9517.444201 C =10538.019986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.084 4.084 4 C -0.120 4.120 5 C 0.149 3.851 6 H 0.057 0.943 7 C -0.118 4.118 8 C -0.123 4.123 9 C 0.088 3.912 10 N -0.635 5.635 11 C 0.712 3.288 12 O -0.633 6.633 13 N -0.733 5.733 14 C 0.148 3.852 15 C -0.097 4.097 16 C -0.012 4.012 17 C -0.530 4.530 18 H 0.038 0.962 19 C 0.005 3.995 20 N -0.950 5.950 21 Si 0.946 3.054 22 H -0.267 1.267 23 H -0.284 1.284 24 H -0.249 1.249 25 H 0.095 0.905 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.407 0.593 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.021 0.979 44 H 0.019 0.981 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.594 -4.320 -30.050 31.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.179 4.179 3 C -0.122 4.122 4 C -0.158 4.158 5 C 0.046 3.954 6 H 0.076 0.924 7 C -0.156 4.156 8 C -0.161 4.161 9 C -0.034 4.034 10 N -0.373 5.373 11 C 0.413 3.587 12 O -0.515 6.515 13 N -0.389 5.389 14 C 0.023 3.977 15 C -0.135 4.135 16 C -0.050 4.050 17 C -0.568 4.568 18 H 0.057 0.943 19 C -0.192 4.192 20 N -0.590 5.590 21 Si 0.770 3.230 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.173 1.173 25 H 0.114 0.886 26 H 0.122 0.878 27 H 0.131 0.869 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.128 0.872 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.244 0.756 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.409 -4.343 -29.586 30.807 hybrid contribution -0.082 0.002 1.181 1.184 sum -7.491 -4.341 -28.405 29.696 Atomic orbital electron populations 1.24008 0.96225 1.02314 1.01523 1.23111 0.96302 0.98932 0.99586 1.20693 0.97739 0.95181 0.98540 1.21833 0.97878 0.97529 0.98581 1.21601 0.91970 0.97332 0.84547 0.92441 1.22755 0.94501 1.03331 0.94994 1.22763 0.98748 1.01192 0.93376 1.22585 0.81444 1.02084 0.97312 1.47741 1.09224 1.77140 1.03184 1.15706 0.84550 0.77919 0.80495 1.90869 1.17373 1.60315 1.82961 1.45111 1.09944 1.78180 1.05674 1.21138 0.96992 1.00868 0.78699 1.21459 0.96141 1.01950 0.93990 1.19459 0.95722 0.96747 0.93032 1.21447 0.93992 1.49358 0.91979 0.94324 1.25969 1.01107 0.94241 0.97848 1.70054 1.32162 1.51965 1.04856 0.85708 0.80255 0.78921 0.78101 1.19246 1.20948 1.17253 0.88616 0.87756 0.86868 0.88485 0.92103 0.94129 0.91637 0.89019 0.88056 0.87203 0.90470 0.90459 0.90276 0.75625 0.92885 0.92848 0.91728 0.91737 0.96108 0.96238 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.26 14.32 67.77 0.97 -2.29 16 2 C -0.16 -2.60 9.52 25.64 0.24 -2.36 16 3 C -0.08 -1.28 5.56 29.85 0.17 -1.12 16 4 C -0.12 -2.43 4.65 30.59 0.14 -2.29 16 5 C 0.15 2.78 2.94 45.34 0.13 2.91 16 6 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 7 C -0.12 -1.10 5.46 31.78 0.17 -0.93 16 8 C -0.12 -1.04 7.08 31.98 0.23 -0.82 16 9 C 0.09 1.23 6.67 86.86 0.58 1.81 16 10 N -0.64 -14.31 3.06 -805.89 -2.47 -16.78 16 11 C 0.71 22.35 8.31 179.05 1.49 23.84 16 12 O -0.63 -25.40 15.16 -4.02 -0.06 -25.46 16 13 N -0.73 -21.25 5.52 -478.52 -2.64 -23.89 16 14 C 0.15 5.03 5.67 86.38 0.49 5.52 16 15 C -0.10 -3.63 5.27 30.59 0.16 -3.47 16 16 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 17 C -0.53 -30.36 9.66 25.60 0.25 -30.12 16 18 H 0.04 2.40 7.99 -2.91 -0.02 2.37 16 19 C 0.01 0.31 5.47 84.66 0.46 0.77 16 20 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 21 Si 0.95 44.94 27.47 68.60 1.88 46.82 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 24 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 25 H 0.10 1.49 7.84 -2.91 -0.02 1.47 16 26 H 0.10 1.43 8.06 -2.91 -0.02 1.40 16 27 H 0.11 1.63 8.06 -2.91 -0.02 1.61 16 28 H 0.10 0.99 7.28 -2.39 -0.02 0.97 16 29 H 0.06 1.01 7.79 -2.38 -0.02 0.99 16 30 H 0.04 1.19 6.59 -2.39 -0.02 1.18 16 31 H 0.06 1.25 8.06 -2.39 -0.02 1.23 16 32 H 0.09 0.67 7.79 -2.39 -0.02 0.65 16 33 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.02 7.12 -2.39 -0.02 1.00 16 38 H 0.41 9.45 6.87 -92.71 -0.64 8.82 16 39 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 44 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 45 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -74.32 360.36 2.87 -71.46 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.25 Total: 16.14 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 5.61 Total: -8.96 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -4.81 Total: -100.01 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.06 Total: -25.46 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Total: -74.32 2.87 -71.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353263455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.904 kcal (2) G-P(sol) polarization free energy of solvation -74.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds