Wall clock time and date at job start Fri Apr 10 2020 17:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50710 * 119.99668 * 2 1 4 4 C 1.30998 * 120.00441 * 179.97438 * 2 1 3 5 5 C 1.50696 * 120.00011 * 173.97272 * 4 2 1 6 6 C 1.50695 * 119.99930 * 353.97461 * 4 2 1 7 7 C 1.50706 * 109.47264 * 94.99646 * 6 4 2 8 8 O 1.21279 * 119.99777 * 359.72687 * 7 6 4 9 9 N 1.34775 * 120.00059 * 180.02562 * 7 6 4 10 10 C 1.46498 * 120.00100 * 354.76464 * 9 7 6 11 11 C 1.46494 * 119.99957 * 174.76999 * 9 7 6 12 12 C 1.53001 * 109.47401 * 90.40960 * 11 9 7 13 13 H 1.09002 * 112.74092 * 313.46015 * 12 11 9 14 14 C 1.53500 * 113.46824 * 84.27526 * 12 11 9 15 15 C 1.53496 * 83.34172 * 140.84972 * 14 12 11 16 16 N 1.47063 * 113.47256 * 182.71707 * 12 11 9 17 17 C 1.36941 * 136.05701 * 38.05557 * 16 12 11 18 18 H 1.07996 * 120.00152 * 352.05475 * 17 16 12 19 19 C 1.38810 * 119.99918 * 172.04700 * 17 16 12 20 20 N 1.31623 * 119.99987 * 163.06840 * 19 17 16 21 21 Si 1.86800 * 120.00062 * 343.07287 * 19 17 16 22 22 H 1.48499 * 109.47308 * 84.67331 * 21 19 17 23 23 H 1.48506 * 109.46903 * 204.67173 * 21 19 17 24 24 H 1.48500 * 109.47180 * 324.67313 * 21 19 17 25 25 H 1.09000 * 109.46764 * 269.99914 * 1 2 3 26 26 H 1.08994 * 109.47574 * 30.00145 * 1 2 3 27 27 H 1.09002 * 109.47093 * 150.00225 * 1 2 3 28 28 H 1.09001 * 109.46842 * 270.32105 * 3 2 1 29 29 H 1.09003 * 109.47090 * 30.31128 * 3 2 1 30 30 H 1.08995 * 109.47012 * 150.31698 * 3 2 1 31 31 H 1.08997 * 109.47317 * 184.90440 * 5 4 2 32 32 H 1.09002 * 109.47389 * 304.89934 * 5 4 2 33 33 H 1.09000 * 109.47031 * 64.89981 * 5 4 2 34 34 H 1.09003 * 109.47269 * 335.00220 * 6 4 2 35 35 H 1.08997 * 109.47474 * 214.99638 * 6 4 2 36 36 H 1.09005 * 109.46742 * 89.99928 * 10 9 7 37 37 H 1.08995 * 109.47196 * 209.99890 * 10 9 7 38 38 H 1.08999 * 109.46987 * 330.00731 * 10 9 7 39 39 H 1.08995 * 109.47317 * 210.40725 * 11 9 7 40 40 H 1.08996 * 109.47140 * 330.41088 * 11 9 7 41 41 H 1.08994 * 114.20573 * 254.43758 * 14 12 11 42 42 H 1.09001 * 114.20124 * 27.26712 * 14 12 11 43 43 H 1.08998 * 113.47175 * 219.15410 * 15 14 12 44 44 H 1.09012 * 113.52065 * 88.72244 * 15 14 12 45 45 H 0.96999 * 120.00281 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1621 -1.1344 0.0005 5 6 3.6628 -1.1380 -0.1365 6 6 1.4149 -2.4359 0.1381 7 6 1.1441 -3.0067 -1.2301 8 8 1.5163 -2.4125 -2.2197 9 7 0.4829 -4.1745 -1.3543 10 6 0.1283 -4.9461 -0.1604 11 6 0.1188 -4.6725 -2.6830 12 6 1.2446 -5.5572 -3.2223 13 1 2.2300 -5.1086 -3.0965 14 6 1.1666 -7.0107 -2.7349 15 6 1.6072 -7.3278 -4.1707 16 7 0.9972 -6.0550 -4.5838 17 6 0.4422 -5.5541 -5.7312 18 1 -0.0576 -4.5969 -5.7160 19 6 0.5222 -6.2766 -6.9137 20 7 -0.2731 -5.9818 -7.9202 21 14 1.7585 -7.6675 -7.0766 22 1 1.1792 -8.9133 -6.5130 23 1 2.0820 -7.8767 -8.5108 24 1 2.9971 -7.3182 -6.3356 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 2.4371 1.6227 -1.0277 29 1 1.6738 2.0635 0.5187 30 1 3.2153 1.1735 0.5089 31 1 4.0192 -2.1659 -0.2027 32 1 3.9466 -0.5963 -1.0389 33 1 4.1081 -0.6542 0.7328 34 1 0.4698 -2.2597 0.6518 35 1 2.0154 -3.1405 0.7134 36 1 -0.8551 -4.6365 0.1934 37 1 0.1083 -6.0077 -0.4066 38 1 0.8679 -4.7679 0.6202 39 1 -0.7996 -5.2553 -2.6135 40 1 -0.0357 -3.8299 -3.3570 41 1 1.9038 -7.2671 -1.9742 42 1 0.1586 -7.3471 -2.4922 43 1 1.1136 -8.2030 -4.5930 44 1 2.6896 -7.3520 -4.2983 45 1 -0.2170 -6.4864 -8.7466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479239475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:15 Heat of formation + Delta-G solvation = 36.269167 kcal Electronic energy + Delta-G solvation = -22680.860308 eV Core-core repulsion = 19507.910421 eV Total energy + Delta-G solvation = -3172.949887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.99728 -38.47969 -37.06919 -35.13709 -32.21620 -31.29175 -29.89678 -28.61671 -28.34350 -26.81126 -25.94835 -24.00695 -23.24240 -22.47338 -19.50292 -18.99368 -17.08694 -16.98674 -16.62096 -15.99527 -15.77483 -15.25970 -14.75415 -14.49764 -14.28115 -13.86169 -13.46753 -13.08035 -12.99740 -12.94657 -12.78998 -12.55976 -12.36864 -12.20094 -12.09569 -12.02484 -11.82887 -11.78002 -11.63161 -11.33830 -11.05753 -10.81592 -10.67215 -10.23601 -10.11899 -9.94877 -9.61511 -9.28956 -8.84472 -8.48396 -8.29367 -7.12885 -5.84269 -3.14834 2.04507 2.86876 3.26456 3.38002 3.49158 3.50681 4.60188 4.61922 4.75167 4.80748 4.86326 5.00686 5.09509 5.18988 5.24875 5.33197 5.33978 5.41515 5.43588 5.47209 5.56502 5.63113 5.66617 5.72084 5.77773 5.83937 5.85755 5.88203 5.93313 5.96660 6.05666 6.13972 6.26071 6.34832 6.47364 6.52159 6.59704 6.68525 6.95614 7.08179 7.21140 7.62157 8.40012 8.45809 8.75175 9.70219 10.38159 11.32575 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024091 B = 0.004038 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.997057 B = 6932.325937 C = 7272.088497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.131 4.131 3 C -0.114 4.114 4 C -0.115 4.115 5 C -0.107 4.107 6 C -0.103 4.103 7 C 0.508 3.492 8 O -0.523 6.523 9 N -0.616 5.616 10 C 0.078 3.922 11 C 0.118 3.882 12 C 0.138 3.862 13 H 0.049 0.951 14 C -0.153 4.153 15 C 0.098 3.902 16 N -0.617 5.617 17 C -0.218 4.218 18 H 0.101 0.899 19 C 0.015 3.985 20 N -0.920 5.920 21 Si 0.883 3.117 22 H -0.287 1.287 23 H -0.300 1.300 24 H -0.274 1.274 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.053 0.947 44 H 0.039 0.961 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.883 6.508 22.870 23.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.131 4.131 3 C -0.171 4.171 4 C -0.115 4.115 5 C -0.164 4.164 6 C -0.143 4.143 7 C 0.295 3.705 8 O -0.398 6.398 9 N -0.350 5.350 10 C -0.065 4.065 11 C -0.005 4.005 12 C 0.030 3.970 13 H 0.066 0.934 14 C -0.191 4.191 15 C -0.028 4.028 16 N -0.345 5.345 17 C -0.344 4.344 18 H 0.118 0.882 19 C -0.182 4.182 20 N -0.566 5.566 21 Si 0.713 3.287 22 H -0.214 1.214 23 H -0.227 1.227 24 H -0.200 1.200 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.926 6.891 21.914 23.157 hybrid contribution 0.774 -0.930 -0.348 1.259 sum 3.700 5.961 21.566 22.679 Atomic orbital electron populations 1.20816 0.92513 1.02653 1.01301 1.21333 0.95487 0.94628 1.01628 1.20794 0.99537 0.94704 1.02037 1.20833 0.95616 0.92761 1.02318 1.20710 0.92028 1.02248 1.01395 1.20830 1.01703 0.96123 0.95598 1.20587 0.77983 0.80607 0.91277 1.90752 1.49792 1.59584 1.39684 1.47921 1.57763 1.21597 1.07737 1.21795 1.00161 0.97156 0.87416 1.21739 0.97763 0.99086 0.81904 1.22348 0.96170 0.92582 0.85921 0.93357 1.23593 1.00997 0.97902 0.96645 1.22516 0.96542 0.91435 0.92297 1.46301 1.68523 1.10983 1.08644 1.18658 1.26534 1.05184 0.83988 0.88157 1.24693 0.99495 0.98515 0.95523 1.69763 1.38668 1.43044 1.05135 0.86827 0.83173 0.82609 0.76050 1.21381 1.22720 1.19963 0.91882 0.91861 0.91956 0.91490 0.92226 0.91824 0.92389 0.91453 0.91981 0.88557 0.88690 0.92879 0.90610 0.91467 0.90280 0.89782 0.92095 0.89852 0.92852 0.94323 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 8.99 36.01 0.32 -0.88 16 2 C -0.13 -1.47 6.04 -101.06 -0.61 -2.08 16 3 C -0.11 -1.07 9.44 36.01 0.34 -0.73 16 4 C -0.11 -1.35 4.54 -101.07 -0.46 -1.81 16 5 C -0.11 -1.17 8.80 36.00 0.32 -0.85 16 6 C -0.10 -1.12 3.76 -29.03 -0.11 -1.23 16 7 C 0.51 7.78 7.18 -10.98 -0.08 7.70 16 8 O -0.52 -10.60 15.66 5.56 0.09 -10.52 16 9 N -0.62 -8.74 2.87 -181.58 -0.52 -9.26 16 10 C 0.08 0.73 10.20 59.85 0.61 1.34 16 11 C 0.12 2.13 5.30 -4.04 -0.02 2.11 16 12 C 0.14 2.77 4.31 -72.40 -0.31 2.46 16 13 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 14 C -0.15 -2.59 7.35 -26.22 -0.19 -2.78 16 15 C 0.10 2.12 5.63 -8.51 -0.05 2.07 16 16 N -0.62 -15.44 3.48 -177.00 -0.62 -16.05 16 17 C -0.22 -6.40 10.96 -15.06 -0.17 -6.57 16 18 H 0.10 3.14 8.06 -52.49 -0.42 2.71 16 19 C 0.01 0.44 5.50 -17.43 -0.10 0.35 16 20 N -0.92 -29.36 13.97 55.49 0.78 -28.59 16 21 Si 0.88 23.37 25.12 -169.99 -4.27 19.10 16 22 H -0.29 -7.32 6.67 56.52 0.38 -6.94 16 23 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 24 H -0.27 -7.13 6.24 56.52 0.35 -6.77 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 27 H 0.06 0.74 6.37 -51.93 -0.33 0.40 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 30 H 0.06 0.53 6.60 -51.93 -0.34 0.19 16 31 H 0.06 0.63 8.01 -51.93 -0.42 0.22 16 32 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 33 H 0.06 0.54 7.44 -51.93 -0.39 0.15 16 34 H 0.10 0.87 6.56 -51.93 -0.34 0.53 16 35 H 0.09 0.83 7.25 -51.93 -0.38 0.45 16 36 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.68 7.39 -51.93 -0.38 0.29 16 38 H 0.07 0.47 6.48 -51.93 -0.34 0.14 16 39 H 0.08 1.34 7.85 -51.93 -0.41 0.94 16 40 H 0.08 1.82 7.48 -51.93 -0.39 1.43 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.08 1.30 7.97 -51.93 -0.41 0.89 16 43 H 0.05 1.20 6.20 -51.93 -0.32 0.87 16 44 H 0.04 0.85 7.25 -51.92 -0.38 0.47 16 45 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -35.31 353.33 -7.55 -42.86 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.83 Total: -1.97 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -0.50 Total: -0.90 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.36 Total: -53.90 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -4.27 Total: 19.10 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.31 -7.55 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479239475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.132 kcal (2) G-P(sol) polarization free energy of solvation -35.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds