Wall clock time and date at job start Fri Apr 10 2020 17:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50710 * 119.99668 * 2 1 4 4 C 1.30998 * 120.00441 * 179.97438 * 2 1 3 5 5 C 1.50696 * 120.00011 * 173.97272 * 4 2 1 6 6 C 1.50695 * 119.99930 * 353.97461 * 4 2 1 7 7 C 1.50706 * 109.47264 * 94.99646 * 6 4 2 8 8 O 1.21279 * 119.99777 * 359.72687 * 7 6 4 9 9 N 1.34775 * 120.00059 * 180.02562 * 7 6 4 10 10 C 1.46498 * 120.00100 * 354.76464 * 9 7 6 11 11 C 1.46494 * 119.99957 * 174.76999 * 9 7 6 12 12 C 1.53001 * 109.47401 * 90.40960 * 11 9 7 13 13 H 1.09002 * 112.74092 * 313.46015 * 12 11 9 14 14 C 1.53500 * 113.46824 * 84.27526 * 12 11 9 15 15 C 1.53496 * 83.34172 * 140.84972 * 14 12 11 16 16 N 1.47063 * 113.47256 * 182.71707 * 12 11 9 17 17 C 1.36941 * 136.05701 * 38.05557 * 16 12 11 18 18 H 1.07996 * 120.00152 * 352.05475 * 17 16 12 19 19 C 1.38810 * 119.99918 * 172.04700 * 17 16 12 20 20 N 1.31623 * 119.99987 * 163.06840 * 19 17 16 21 21 Si 1.86800 * 120.00062 * 343.07287 * 19 17 16 22 22 H 1.48499 * 109.47308 * 84.67331 * 21 19 17 23 23 H 1.48506 * 109.46903 * 204.67173 * 21 19 17 24 24 H 1.48500 * 109.47180 * 324.67313 * 21 19 17 25 25 H 1.09000 * 109.46764 * 269.99914 * 1 2 3 26 26 H 1.08994 * 109.47574 * 30.00145 * 1 2 3 27 27 H 1.09002 * 109.47093 * 150.00225 * 1 2 3 28 28 H 1.09001 * 109.46842 * 270.32105 * 3 2 1 29 29 H 1.09003 * 109.47090 * 30.31128 * 3 2 1 30 30 H 1.08995 * 109.47012 * 150.31698 * 3 2 1 31 31 H 1.08997 * 109.47317 * 184.90440 * 5 4 2 32 32 H 1.09002 * 109.47389 * 304.89934 * 5 4 2 33 33 H 1.09000 * 109.47031 * 64.89981 * 5 4 2 34 34 H 1.09003 * 109.47269 * 335.00220 * 6 4 2 35 35 H 1.08997 * 109.47474 * 214.99638 * 6 4 2 36 36 H 1.09005 * 109.46742 * 89.99928 * 10 9 7 37 37 H 1.08995 * 109.47196 * 209.99890 * 10 9 7 38 38 H 1.08999 * 109.46987 * 330.00731 * 10 9 7 39 39 H 1.08995 * 109.47317 * 210.40725 * 11 9 7 40 40 H 1.08996 * 109.47140 * 330.41088 * 11 9 7 41 41 H 1.08994 * 114.20573 * 254.43758 * 14 12 11 42 42 H 1.09001 * 114.20124 * 27.26712 * 14 12 11 43 43 H 1.08998 * 113.47175 * 219.15410 * 15 14 12 44 44 H 1.09012 * 113.52065 * 88.72244 * 15 14 12 45 45 H 0.96999 * 120.00281 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1621 -1.1344 0.0005 5 6 3.6628 -1.1380 -0.1365 6 6 1.4149 -2.4359 0.1381 7 6 1.1441 -3.0067 -1.2301 8 8 1.5163 -2.4125 -2.2197 9 7 0.4829 -4.1745 -1.3543 10 6 0.1283 -4.9461 -0.1604 11 6 0.1188 -4.6725 -2.6830 12 6 1.2446 -5.5572 -3.2223 13 1 2.2300 -5.1086 -3.0965 14 6 1.1666 -7.0107 -2.7349 15 6 1.6072 -7.3278 -4.1707 16 7 0.9972 -6.0550 -4.5838 17 6 0.4422 -5.5541 -5.7312 18 1 -0.0576 -4.5969 -5.7160 19 6 0.5222 -6.2766 -6.9137 20 7 -0.2731 -5.9818 -7.9202 21 14 1.7585 -7.6675 -7.0766 22 1 1.1792 -8.9133 -6.5130 23 1 2.0820 -7.8767 -8.5108 24 1 2.9971 -7.3182 -6.3356 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 2.4371 1.6227 -1.0277 29 1 1.6738 2.0635 0.5187 30 1 3.2153 1.1735 0.5089 31 1 4.0192 -2.1659 -0.2027 32 1 3.9466 -0.5963 -1.0389 33 1 4.1081 -0.6542 0.7328 34 1 0.4698 -2.2597 0.6518 35 1 2.0154 -3.1405 0.7134 36 1 -0.8551 -4.6365 0.1934 37 1 0.1083 -6.0077 -0.4066 38 1 0.8679 -4.7679 0.6202 39 1 -0.7996 -5.2553 -2.6135 40 1 -0.0357 -3.8299 -3.3570 41 1 1.9038 -7.2671 -1.9742 42 1 0.1586 -7.3471 -2.4922 43 1 1.1136 -8.2030 -4.5930 44 1 2.6896 -7.3520 -4.2983 45 1 -0.2170 -6.4864 -8.7466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479239475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:14 Heat of formation + Delta-G solvation = 12.587802 kcal Electronic energy + Delta-G solvation = -22681.887209 eV Core-core repulsion = 19507.910421 eV Total energy + Delta-G solvation = -3173.976789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.23247 -40.03418 -38.02169 -36.38900 -34.43835 -32.23798 -30.91818 -30.40470 -29.62757 -27.66732 -26.97714 -25.32774 -24.88035 -23.84785 -21.19040 -20.25201 -18.89141 -18.06204 -17.80283 -17.47728 -16.97476 -16.80159 -16.03694 -15.68070 -15.32034 -15.13105 -14.99316 -14.82604 -14.24352 -14.10461 -13.83355 -13.65751 -13.58677 -13.39840 -13.15872 -13.12938 -13.02096 -12.87972 -12.73199 -12.63790 -12.50392 -12.11383 -12.08068 -11.96010 -11.81648 -11.61649 -11.17724 -10.99721 -10.80733 -9.60500 -9.33513 -9.17863 -8.15823 -5.42622 1.16376 1.25524 1.33807 1.41569 1.71705 2.14458 2.39504 3.05831 3.12453 3.59553 3.75303 3.86202 4.04205 4.17249 4.21700 4.27299 4.35178 4.38906 4.46209 4.56913 4.57344 4.64280 4.65184 4.69620 4.78049 4.82031 4.86367 4.89355 4.94014 4.96700 5.00730 5.02423 5.05216 5.11559 5.13978 5.21478 5.22392 5.43845 5.64831 5.77598 6.11820 6.13924 6.49835 6.53331 7.29617 7.42108 8.26803 9.05309 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024091 B = 0.004038 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.997057 B = 6932.325937 C = 7272.088497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.139 4.139 3 C -0.115 4.115 4 C -0.137 4.137 5 C -0.105 4.105 6 C -0.091 4.091 7 C 0.501 3.499 8 O -0.587 6.587 9 N -0.611 5.611 10 C 0.068 3.932 11 C 0.131 3.869 12 C 0.133 3.867 13 H 0.032 0.968 14 C -0.112 4.112 15 C 0.084 3.916 16 N -0.648 5.648 17 C -0.208 4.208 18 H 0.059 0.941 19 C -0.050 4.050 20 N -0.969 5.969 21 Si 0.951 3.049 22 H -0.266 1.266 23 H -0.305 1.305 24 H -0.267 1.267 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.032 0.968 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.049 0.951 44 H 0.042 0.958 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.626 4.772 26.956 27.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.140 4.140 3 C -0.171 4.171 4 C -0.137 4.137 5 C -0.162 4.162 6 C -0.130 4.130 7 C 0.291 3.709 8 O -0.467 6.467 9 N -0.345 5.345 10 C -0.073 4.073 11 C 0.006 3.994 12 C 0.026 3.974 13 H 0.049 0.951 14 C -0.150 4.150 15 C -0.040 4.040 16 N -0.376 5.376 17 C -0.336 4.336 18 H 0.077 0.923 19 C -0.242 4.242 20 N -0.618 5.618 21 Si 0.779 3.221 22 H -0.192 1.192 23 H -0.233 1.233 24 H -0.192 1.192 25 H 0.107 0.893 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.051 0.949 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.670 5.122 26.101 26.851 hybrid contribution 0.505 -0.273 -1.545 1.648 sum 4.175 4.849 24.556 25.376 Atomic orbital electron populations 1.20828 0.92088 1.01692 1.02620 1.21661 0.96119 0.95328 1.00844 1.20826 1.00256 0.94398 1.01633 1.21075 0.96123 0.93407 1.03102 1.20693 0.91992 1.02022 1.01462 1.20862 1.03272 0.96091 0.92790 1.21486 0.76778 0.80265 0.92390 1.90729 1.52467 1.61340 1.42117 1.47998 1.57031 1.21817 1.07613 1.22190 1.02246 0.97057 0.85799 1.21328 0.97649 0.96921 0.83454 1.22533 0.95751 0.95412 0.83681 0.95082 1.23429 1.03318 0.93512 0.94742 1.22788 0.96384 0.89509 0.95339 1.46506 1.68787 1.13437 1.08844 1.18496 1.25586 1.03477 0.86013 0.92348 1.25428 1.01484 1.02000 0.95299 1.69915 1.40743 1.45287 1.05897 0.85744 0.80654 0.80092 0.75636 1.19209 1.23311 1.19238 0.89294 0.91962 0.93797 0.92714 0.90653 0.90722 0.92659 0.93512 0.89618 0.86234 0.85632 0.90931 0.89529 0.88359 0.89055 0.94942 0.87528 0.87747 0.93296 0.94052 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 8.99 71.24 0.64 -1.61 16 2 C -0.14 -2.98 6.04 -16.48 -0.10 -3.08 16 3 C -0.11 -2.04 9.44 71.24 0.67 -1.37 16 4 C -0.14 -3.03 4.54 -16.49 -0.07 -3.10 16 5 C -0.11 -2.19 8.80 71.23 0.63 -1.56 16 6 C -0.09 -1.75 3.76 29.10 0.11 -1.64 16 7 C 0.50 15.03 7.18 87.66 0.63 15.66 16 8 O -0.59 -24.89 15.66 -3.03 -0.05 -24.94 16 9 N -0.61 -16.32 2.87 -846.78 -2.43 -18.75 16 10 C 0.07 0.96 10.20 127.77 1.30 2.26 16 11 C 0.13 4.76 5.30 86.38 0.46 5.21 16 12 C 0.13 5.25 4.31 41.79 0.18 5.44 16 13 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 14 C -0.11 -3.33 7.35 30.93 0.23 -3.10 16 15 C 0.08 3.45 5.63 83.18 0.47 3.92 16 16 N -0.65 -32.56 3.48 -713.90 -2.49 -35.05 16 17 C -0.21 -12.76 10.96 84.03 0.92 -11.84 16 18 H 0.06 3.96 8.06 -2.91 -0.02 3.93 16 19 C -0.05 -3.09 5.50 84.86 0.47 -2.62 16 20 N -0.97 -64.39 13.97 21.65 0.30 -64.09 16 21 Si 0.95 48.97 25.12 68.60 1.72 50.69 16 22 H -0.27 -12.72 6.67 99.48 0.66 -12.05 16 23 H -0.31 -15.84 7.11 99.48 0.71 -15.13 16 24 H -0.27 -13.28 6.24 99.48 0.62 -12.66 16 25 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.06 1.20 8.12 -2.39 -0.02 1.18 16 27 H 0.04 1.01 6.37 -2.39 -0.02 0.99 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.07 8.12 -2.39 -0.02 1.05 16 30 H 0.07 1.14 6.60 -2.39 -0.02 1.12 16 31 H 0.05 1.15 8.01 -2.39 -0.02 1.13 16 32 H 0.05 1.14 8.04 -2.39 -0.02 1.12 16 33 H 0.09 1.31 7.44 -2.39 -0.02 1.29 16 34 H 0.12 1.74 6.56 -2.39 -0.02 1.73 16 35 H 0.13 1.63 7.25 -2.39 -0.02 1.61 16 36 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.09 1.07 7.39 -2.39 -0.02 1.06 16 38 H 0.10 0.82 6.48 -2.39 -0.02 0.80 16 39 H 0.09 3.03 7.85 -2.39 -0.02 3.01 16 40 H 0.03 1.50 7.48 -2.39 -0.02 1.48 16 41 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.10 2.73 7.97 -2.39 -0.02 2.71 16 43 H 0.05 2.05 6.20 -2.39 -0.01 2.03 16 44 H 0.04 1.69 7.25 -2.38 -0.02 1.68 16 45 H 0.26 16.43 8.31 -92.71 -0.77 15.66 16 Total: -1.00 -83.52 353.33 4.41 -79.11 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.82 Total: 10.47 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 6.53 Total: 2.56 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -4.62 Total: -117.89 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.05 Total: -24.94 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 1.72 Total: 50.69 kcal Total: -83.52 4.41 -79.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479239475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.698 kcal (2) G-P(sol) polarization free energy of solvation -83.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds