Wall clock time and date at job start Fri Apr 10 2020 17:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50699 * 120.00293 * 2 1 4 4 C 1.53000 * 109.47187 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47010 * 239.99746 * 3 2 1 6 6 C 1.53001 * 109.47500 * 119.99746 * 3 2 1 7 7 C 1.50694 * 109.47168 * 180.02562 * 6 3 2 8 8 O 1.21283 * 120.00363 * 359.97438 * 7 6 3 9 9 N 1.34784 * 119.99988 * 179.97438 * 7 6 3 10 10 C 1.46493 * 119.99864 * 179.72721 * 9 7 6 11 11 C 1.53001 * 109.47084 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46949 * 294.99717 * 11 10 9 13 13 N 1.46499 * 109.47392 * 54.99694 * 11 10 9 14 14 C 1.36941 * 120.00177 * 205.00605 * 13 11 10 15 15 H 1.08001 * 119.99593 * 359.97438 * 14 13 11 16 16 C 1.38805 * 119.99910 * 180.02562 * 14 13 11 17 17 N 1.31617 * 120.00315 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99791 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47070 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.46955 * 119.99814 * 18 16 14 21 21 H 1.48501 * 109.47000 * 239.99404 * 18 16 14 22 22 C 1.52997 * 109.47519 * 175.00001 * 11 10 9 23 23 C 1.53003 * 117.50025 * 248.74690 * 22 11 10 24 24 C 1.52997 * 117.50117 * 180.08541 * 22 11 10 25 25 H 1.07999 * 120.00272 * 180.02562 * 1 2 3 26 26 H 1.08002 * 120.00069 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00069 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47544 * 179.97438 * 4 3 2 29 29 H 1.09005 * 109.47089 * 300.00453 * 4 3 2 30 30 H 1.09002 * 109.47106 * 60.00254 * 4 3 2 31 31 H 1.09000 * 109.47156 * 299.99481 * 5 3 2 32 32 H 1.08995 * 109.47095 * 59.99760 * 5 3 2 33 33 H 1.09007 * 109.47356 * 179.97438 * 5 3 2 34 34 H 1.08998 * 109.46837 * 60.00023 * 6 3 2 35 35 H 1.09002 * 109.46926 * 299.99827 * 6 3 2 36 36 H 0.97000 * 119.99339 * 0.02562 * 9 7 6 37 37 H 1.09007 * 109.47196 * 299.99538 * 10 9 7 38 38 H 1.09006 * 109.47678 * 59.99732 * 10 9 7 39 39 H 0.97000 * 119.99498 * 24.99864 * 13 11 10 40 40 H 0.96997 * 120.00360 * 179.97438 * 17 16 14 41 41 H 1.09006 * 115.54757 * 34.41089 * 22 11 10 42 42 H 1.09001 * 117.49296 * 359.97438 * 23 22 11 43 43 H 1.08991 * 117.50309 * 145.01577 * 23 22 11 44 44 H 1.08999 * 117.49717 * 214.97918 * 24 22 11 45 45 H 1.08993 * 117.49842 * 359.97328 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9431 1.3860 -1.2492 6 6 2.9431 1.3862 1.2492 7 6 3.6961 2.6915 1.2495 8 8 3.5446 3.4792 0.3398 9 7 4.5380 2.9836 2.2607 10 6 5.2746 4.2499 2.2579 11 6 6.1532 4.3316 3.5078 12 1 5.5207 4.3679 4.3948 13 7 7.0195 3.1521 3.5738 14 6 7.5033 2.7245 4.7814 15 1 7.2465 3.2572 5.6852 16 6 8.3246 1.6072 4.8438 17 7 8.6379 0.9584 3.7424 18 14 8.9851 1.0244 6.4911 19 1 8.4899 1.9194 7.5676 20 1 8.5212 -0.3629 6.7476 21 1 10.4696 1.0535 6.4675 22 6 7.0149 5.5943 3.4440 23 6 8.5219 5.4122 3.2526 24 6 7.9705 5.8571 4.6095 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.6143 3.4120 -0.0002 29 1 0.4429 2.4101 -0.8909 30 1 0.4423 2.4106 0.8891 31 1 3.6515 0.5575 -1.2491 32 1 2.3165 1.3282 -2.1392 33 1 3.4879 2.3302 -1.2495 34 1 3.6514 0.5577 1.2493 35 1 2.3164 1.3285 2.1392 36 1 4.6594 2.3534 2.9880 37 1 5.9028 4.3029 1.3686 38 1 4.5690 5.0808 2.2543 39 1 7.2503 2.6739 2.7620 40 1 9.2121 0.1778 3.7859 41 1 6.5482 6.4584 2.9710 42 1 8.8995 4.3928 3.1725 43 1 9.0468 6.1567 2.6541 44 1 8.1329 6.8942 4.9031 45 1 7.9851 5.1307 5.4219 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480021946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:22 Heat of formation + Delta-G solvation = 12.809945 kcal Electronic energy + Delta-G solvation = -22524.849322 eV Core-core repulsion = 19350.882166 eV Total energy + Delta-G solvation = -3173.967156 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.94058 -37.89576 -36.87649 -34.42307 -33.25982 -31.36575 -30.84611 -28.79358 -27.21193 -27.14867 -23.77846 -22.94139 -22.00816 -21.47203 -20.04774 -19.01265 -18.15651 -17.34994 -16.69173 -15.77272 -15.38089 -15.22140 -14.94784 -14.60318 -14.19510 -14.01745 -13.71844 -13.44904 -13.06714 -12.90634 -12.54712 -12.20153 -11.90865 -11.63845 -11.41790 -11.17958 -11.08388 -11.01245 -10.91140 -10.86660 -10.81019 -10.57542 -10.52547 -10.11263 -9.71477 -9.52832 -9.41485 -9.25231 -9.10248 -9.00160 -8.54625 -7.09397 -5.86754 -3.16777 2.24574 2.99186 3.36239 3.43153 3.44969 3.64366 4.47518 4.61948 4.76647 4.83581 5.00279 5.27887 5.29405 5.37141 5.43075 5.47271 5.57580 5.66652 5.71373 5.74065 5.80329 5.83851 5.87506 5.97961 6.04831 6.06925 6.08117 6.13418 6.20879 6.37323 6.43667 6.50543 6.54230 6.62268 6.66376 6.76593 6.80004 6.95222 7.03471 7.26253 7.63462 7.98791 8.30528 8.64532 9.43040 9.96947 10.33175 11.34783 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.004320 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.174839 B = 6480.150260 C = 7579.208212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 C -0.019 4.019 4 C -0.154 4.154 5 C -0.149 4.149 6 C -0.130 4.130 7 C 0.513 3.487 8 O -0.548 6.548 9 N -0.713 5.713 10 C 0.120 3.880 11 C 0.191 3.809 12 H 0.056 0.944 13 N -0.717 5.717 14 C -0.239 4.239 15 H 0.072 0.928 16 C -0.008 4.008 17 N -0.928 5.928 18 Si 0.902 3.098 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.177 4.177 23 C -0.163 4.163 24 C -0.176 4.176 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.410 0.590 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.085 0.915 42 H 0.118 0.882 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.042 2.153 -5.000 13.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.158 4.158 3 C -0.019 4.019 4 C -0.211 4.211 5 C -0.206 4.206 6 C -0.170 4.170 7 C 0.299 3.701 8 O -0.428 6.428 9 N -0.364 5.364 10 C -0.005 4.005 11 C 0.081 3.919 12 H 0.074 0.926 13 N -0.359 5.359 14 C -0.370 4.370 15 H 0.090 0.910 16 C -0.204 4.204 17 N -0.576 5.576 18 Si 0.733 3.267 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.199 4.199 23 C -0.200 4.200 24 C -0.213 4.213 25 H 0.111 0.889 26 H 0.121 0.879 27 H 0.125 0.875 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.246 0.754 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.221 0.779 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.136 0.864 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.096 2.673 -5.444 13.531 hybrid contribution 0.697 -0.919 1.068 1.572 sum -11.399 1.754 -4.376 12.335 Atomic orbital electron populations 1.23969 0.96175 1.01856 1.01943 1.23012 0.95931 0.97863 0.99021 1.19352 0.94871 0.92943 0.94734 1.22177 0.98472 0.99965 1.00517 1.22053 0.99171 1.03860 0.95528 1.21693 0.99300 0.96426 0.99600 1.20527 0.79533 0.88282 0.81721 1.90526 1.65549 1.50938 1.35740 1.46048 1.43406 1.21671 1.25316 1.21545 0.94136 0.85206 0.99605 1.19995 0.90487 0.86946 0.94495 0.92596 1.42476 1.56830 1.29010 1.07565 1.19214 1.23723 1.07856 0.86239 0.91022 1.24701 1.00613 0.98397 0.96707 1.69662 1.40796 1.21449 1.25682 0.86207 0.78619 0.78364 0.83513 1.20585 1.21946 1.21912 1.23072 0.93210 1.00000 1.03633 1.22910 0.95162 1.03431 0.98501 1.22849 1.04951 1.00194 0.93287 0.88922 0.87914 0.87505 0.89379 0.93102 0.93420 0.93319 0.93332 0.89284 0.88678 0.89171 0.75412 0.91813 0.91991 0.77939 0.93500 0.89668 0.86359 0.91304 0.91044 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.98 13.70 29.02 0.40 -1.58 16 2 C -0.14 -1.51 8.76 -36.02 -0.32 -1.83 16 3 C -0.02 -0.22 0.74 -155.66 -0.11 -0.34 16 4 C -0.15 -1.88 6.83 37.16 0.25 -1.62 16 5 C -0.15 -1.93 8.16 37.16 0.30 -1.63 16 6 C -0.13 -1.65 4.75 -27.89 -0.13 -1.78 16 7 C 0.51 7.88 7.24 -10.98 -0.08 7.80 16 8 O -0.55 -9.53 11.35 5.56 0.06 -9.47 16 9 N -0.71 -11.28 5.39 -60.29 -0.32 -11.61 16 10 C 0.12 1.97 5.22 -4.04 -0.02 1.95 16 11 C 0.19 3.45 2.86 -67.93 -0.19 3.25 16 12 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 13 N -0.72 -15.63 3.07 -53.43 -0.16 -15.79 16 14 C -0.24 -5.88 8.16 -15.06 -0.12 -6.00 16 15 H 0.07 1.75 6.91 -52.49 -0.36 1.39 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 17 N -0.93 -25.95 13.06 55.49 0.72 -25.23 16 18 Si 0.90 21.12 29.55 -169.99 -5.02 16.09 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 C -0.18 -3.06 5.70 -90.62 -0.52 -3.57 16 23 C -0.16 -3.03 9.74 -26.69 -0.26 -3.29 16 24 C -0.18 -3.11 9.87 -26.69 -0.26 -3.37 16 25 H 0.09 0.78 8.06 -52.49 -0.42 0.36 16 26 H 0.10 0.98 5.69 -52.49 -0.30 0.68 16 27 H 0.11 1.08 8.06 -52.49 -0.42 0.65 16 28 H 0.09 1.26 5.51 -51.93 -0.29 0.98 16 29 H 0.05 0.57 7.50 -51.93 -0.39 0.18 16 30 H 0.05 0.53 7.50 -51.93 -0.39 0.14 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 1.35 5.51 -51.93 -0.29 1.07 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.41 6.60 8.13 -40.82 -0.33 6.27 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.39 9.29 7.80 -40.82 -0.32 8.97 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.09 1.32 8.11 -51.93 -0.42 0.89 16 42 H 0.12 2.63 6.68 -51.93 -0.35 2.29 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.10 2.02 6.22 -51.93 -0.32 1.70 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -26.83 354.17 -8.09 -34.92 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -7.54 Total: 18.05 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -1.16 Total: -12.31 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 0.24 Total: -52.63 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.06 Total: -9.47 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -26.83 -8.09 -34.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480021946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.730 kcal (2) G-P(sol) polarization free energy of solvation -26.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds