Wall clock time and date at job start Fri Apr 10 2020 17:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50699 * 120.00293 * 2 1 4 4 C 1.53000 * 109.47187 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47010 * 239.99746 * 3 2 1 6 6 C 1.53001 * 109.47500 * 119.99746 * 3 2 1 7 7 C 1.50694 * 109.47168 * 180.02562 * 6 3 2 8 8 O 1.21283 * 120.00363 * 359.97438 * 7 6 3 9 9 N 1.34784 * 119.99988 * 179.97438 * 7 6 3 10 10 C 1.46493 * 119.99864 * 179.72721 * 9 7 6 11 11 C 1.53001 * 109.47084 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46949 * 294.99717 * 11 10 9 13 13 N 1.46499 * 109.47392 * 54.99694 * 11 10 9 14 14 C 1.36941 * 120.00177 * 205.00605 * 13 11 10 15 15 H 1.08001 * 119.99593 * 359.97438 * 14 13 11 16 16 C 1.38805 * 119.99910 * 180.02562 * 14 13 11 17 17 N 1.31617 * 120.00315 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99791 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47070 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.46955 * 119.99814 * 18 16 14 21 21 H 1.48501 * 109.47000 * 239.99404 * 18 16 14 22 22 C 1.52997 * 109.47519 * 175.00001 * 11 10 9 23 23 C 1.53003 * 117.50025 * 248.74690 * 22 11 10 24 24 C 1.52997 * 117.50117 * 180.08541 * 22 11 10 25 25 H 1.07999 * 120.00272 * 180.02562 * 1 2 3 26 26 H 1.08002 * 120.00069 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00069 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47544 * 179.97438 * 4 3 2 29 29 H 1.09005 * 109.47089 * 300.00453 * 4 3 2 30 30 H 1.09002 * 109.47106 * 60.00254 * 4 3 2 31 31 H 1.09000 * 109.47156 * 299.99481 * 5 3 2 32 32 H 1.08995 * 109.47095 * 59.99760 * 5 3 2 33 33 H 1.09007 * 109.47356 * 179.97438 * 5 3 2 34 34 H 1.08998 * 109.46837 * 60.00023 * 6 3 2 35 35 H 1.09002 * 109.46926 * 299.99827 * 6 3 2 36 36 H 0.97000 * 119.99339 * 0.02562 * 9 7 6 37 37 H 1.09007 * 109.47196 * 299.99538 * 10 9 7 38 38 H 1.09006 * 109.47678 * 59.99732 * 10 9 7 39 39 H 0.97000 * 119.99498 * 24.99864 * 13 11 10 40 40 H 0.96997 * 120.00360 * 179.97438 * 17 16 14 41 41 H 1.09006 * 115.54757 * 34.41089 * 22 11 10 42 42 H 1.09001 * 117.49296 * 359.97438 * 23 22 11 43 43 H 1.08991 * 117.50309 * 145.01577 * 23 22 11 44 44 H 1.08999 * 117.49717 * 214.97918 * 24 22 11 45 45 H 1.08993 * 117.49842 * 359.97328 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9431 1.3860 -1.2492 6 6 2.9431 1.3862 1.2492 7 6 3.6961 2.6915 1.2495 8 8 3.5446 3.4792 0.3398 9 7 4.5380 2.9836 2.2607 10 6 5.2746 4.2499 2.2579 11 6 6.1532 4.3316 3.5078 12 1 5.5207 4.3679 4.3948 13 7 7.0195 3.1521 3.5738 14 6 7.5033 2.7245 4.7814 15 1 7.2465 3.2572 5.6852 16 6 8.3246 1.6072 4.8438 17 7 8.6379 0.9584 3.7424 18 14 8.9851 1.0244 6.4911 19 1 8.4899 1.9194 7.5676 20 1 8.5212 -0.3629 6.7476 21 1 10.4696 1.0535 6.4675 22 6 7.0149 5.5943 3.4440 23 6 8.5219 5.4122 3.2526 24 6 7.9705 5.8571 4.6095 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.6143 3.4120 -0.0002 29 1 0.4429 2.4101 -0.8909 30 1 0.4423 2.4106 0.8891 31 1 3.6515 0.5575 -1.2491 32 1 2.3165 1.3282 -2.1392 33 1 3.4879 2.3302 -1.2495 34 1 3.6514 0.5577 1.2493 35 1 2.3164 1.3285 2.1392 36 1 4.6594 2.3534 2.9880 37 1 5.9028 4.3029 1.3686 38 1 4.5690 5.0808 2.2543 39 1 7.2503 2.6739 2.7620 40 1 9.2121 0.1778 3.7859 41 1 6.5482 6.4584 2.9710 42 1 8.8995 4.3928 3.1725 43 1 9.0468 6.1567 2.6541 44 1 8.1329 6.8942 4.9031 45 1 7.9851 5.1307 5.4219 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480021946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:21 Heat of formation + Delta-G solvation = -1.562178 kcal Electronic energy + Delta-G solvation = -22525.472544 eV Core-core repulsion = 19350.882166 eV Total energy + Delta-G solvation = -3174.590378 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.13314 -39.32471 -37.98204 -35.80126 -35.02238 -32.70297 -32.08812 -30.23531 -28.47538 -28.14689 -25.55600 -24.30111 -23.16998 -22.83852 -21.33516 -20.45653 -19.23778 -19.01219 -17.91625 -17.05809 -16.74193 -16.42934 -16.30696 -16.08065 -15.47955 -15.39776 -15.07414 -14.76078 -14.50444 -14.22651 -13.74023 -13.53483 -13.05351 -12.89250 -12.88419 -12.64082 -12.60489 -12.55289 -12.18257 -12.09213 -11.96959 -11.91717 -11.80012 -11.57992 -11.48443 -11.03611 -10.90418 -10.61717 -10.38710 -10.20226 -9.85769 -8.97695 -7.87653 -5.14818 1.44954 1.48642 1.51933 1.58568 1.77021 2.41744 2.59414 3.14741 3.47694 3.75866 3.89011 3.91320 4.00983 4.05285 4.23104 4.31145 4.35244 4.44132 4.49319 4.53932 4.61584 4.69326 4.71404 4.77480 4.87760 4.95738 4.97266 5.00197 5.10656 5.13740 5.20253 5.22493 5.28859 5.43324 5.47419 5.54626 5.67848 5.68785 5.73394 5.82843 5.98356 6.32854 6.71387 7.39936 7.41416 8.12392 8.37804 9.34970 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.004320 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.174839 B = 6480.150260 C = 7579.208212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.154 4.154 3 C -0.017 4.017 4 C -0.150 4.150 5 C -0.147 4.147 6 C -0.126 4.126 7 C 0.510 3.490 8 O -0.568 6.568 9 N -0.715 5.715 10 C 0.130 3.870 11 C 0.192 3.808 12 H 0.059 0.941 13 N -0.719 5.719 14 C -0.217 4.217 15 H 0.076 0.924 16 C -0.065 4.065 17 N -0.964 5.964 18 Si 0.955 3.045 19 H -0.268 1.268 20 H -0.298 1.298 21 H -0.303 1.303 22 C -0.168 4.168 23 C -0.174 4.174 24 C -0.170 4.170 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.409 0.591 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.374 0.626 40 H 0.247 0.753 41 H 0.114 0.886 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.738 2.882 -4.457 14.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.172 4.172 3 C -0.018 4.018 4 C -0.206 4.206 5 C -0.204 4.204 6 C -0.166 4.166 7 C 0.298 3.702 8 O -0.449 6.449 9 N -0.366 5.366 10 C 0.005 3.995 11 C 0.083 3.917 12 H 0.077 0.923 13 N -0.359 5.359 14 C -0.348 4.348 15 H 0.094 0.906 16 C -0.258 4.258 17 N -0.615 5.615 18 Si 0.786 3.214 19 H -0.193 1.193 20 H -0.226 1.226 21 H -0.231 1.231 22 C -0.189 4.189 23 C -0.211 4.211 24 C -0.207 4.207 25 H 0.127 0.873 26 H 0.123 0.877 27 H 0.131 0.869 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.245 0.755 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.206 0.794 40 H 0.056 0.944 41 H 0.132 0.868 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.824 3.442 -4.880 15.059 hybrid contribution 1.158 -1.054 0.862 1.787 sum -12.666 2.388 -4.018 13.501 Atomic orbital electron populations 1.24146 0.95832 1.02802 0.99978 1.22941 0.96293 0.97187 1.00782 1.19330 0.94714 0.93945 0.93794 1.22103 0.98383 0.98726 1.01429 1.21994 0.99331 1.02401 0.96638 1.21728 0.99391 0.94667 1.00791 1.21020 0.79217 0.88980 0.81006 1.90534 1.66142 1.51866 1.36336 1.46071 1.43529 1.21470 1.25561 1.21389 0.93970 0.86190 0.97920 1.20129 0.90184 0.85982 0.95397 0.92285 1.42520 1.57147 1.30068 1.06185 1.19456 1.21654 1.06567 0.87162 0.90631 1.25275 1.02147 0.99449 0.98910 1.69796 1.42358 1.22092 1.27291 0.85341 0.77210 0.77684 0.81134 1.19257 1.22587 1.23140 1.23070 0.92310 1.00213 1.03345 1.22768 0.96418 1.01838 1.00076 1.22838 1.04600 1.01159 0.92127 0.87288 0.87662 0.86872 0.91725 0.92272 0.92388 0.93269 0.92517 0.91806 0.88395 0.87472 0.75545 0.93358 0.90443 0.79364 0.94432 0.86786 0.90456 0.89196 0.88100 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.22 13.70 67.79 0.93 -2.29 16 2 C -0.15 -3.00 8.76 25.65 0.22 -2.77 16 3 C -0.02 -0.40 0.74 -52.93 -0.04 -0.44 16 4 C -0.15 -3.43 6.83 71.98 0.49 -2.94 16 5 C -0.15 -3.75 8.16 71.98 0.59 -3.16 16 6 C -0.13 -3.05 4.75 29.85 0.14 -2.91 16 7 C 0.51 15.43 7.24 87.65 0.63 16.07 16 8 O -0.57 -19.72 11.35 -3.04 -0.03 -19.75 16 9 N -0.72 -22.25 5.39 -463.05 -2.50 -24.75 16 10 C 0.13 4.16 5.22 86.38 0.45 4.61 16 11 C 0.19 6.71 2.86 44.99 0.13 6.83 16 12 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 13 N -0.72 -31.42 3.07 -322.94 -0.99 -32.41 16 14 C -0.22 -10.61 8.16 84.03 0.69 -9.93 16 15 H 0.08 3.62 6.91 -2.91 -0.02 3.60 16 16 C -0.07 -3.45 5.50 84.86 0.47 -2.98 16 17 N -0.96 -55.25 13.06 21.65 0.28 -54.97 16 18 Si 0.95 43.86 29.55 68.60 2.03 45.88 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 20 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 21 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 22 C -0.17 -5.44 5.70 -10.79 -0.06 -5.50 16 23 C -0.17 -6.28 9.74 30.62 0.30 -5.98 16 24 C -0.17 -5.67 9.87 30.62 0.30 -5.37 16 25 H 0.11 1.49 8.06 -2.91 -0.02 1.47 16 26 H 0.11 1.72 5.69 -2.91 -0.02 1.70 16 27 H 0.11 2.05 8.06 -2.91 -0.02 2.03 16 28 H 0.06 1.82 5.51 -2.39 -0.01 1.80 16 29 H 0.06 1.23 7.50 -2.38 -0.02 1.21 16 30 H 0.06 1.18 7.50 -2.39 -0.02 1.17 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.97 5.51 -2.38 -0.01 1.95 16 34 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.41 12.97 8.13 -92.71 -0.75 12.21 16 37 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 39 H 0.37 18.35 7.80 -92.71 -0.72 17.63 16 40 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 41 H 0.11 3.11 8.11 -2.38 -0.02 3.09 16 42 H 0.08 3.49 6.68 -2.39 -0.02 3.48 16 43 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 44 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 45 H 0.08 3.01 6.22 -2.39 -0.01 3.00 16 Total: -1.00 -57.85 354.17 3.53 -54.32 By element: Atomic # 1 Polarization: 48.94 SS G_CDS: -0.50 Total: 48.44 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 5.24 Total: -16.77 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -3.21 Total: -112.13 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.03 Total: -19.75 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -57.85 3.53 -54.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480021946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.758 kcal (2) G-P(sol) polarization free energy of solvation -57.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds