Wall clock time and date at job start Fri Apr 10 2020 17:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.47627 * 2 1 4 4 C 1.50699 * 119.99436 * 275.00015 * 3 2 1 5 5 C 1.32989 * 120.00225 * 94.99552 * 3 2 1 6 6 C 1.47103 * 119.99937 * 172.14635 * 5 3 2 7 7 O 1.21616 * 119.99826 * 353.29441 * 6 5 3 8 8 N 1.34767 * 120.00106 * 173.30147 * 6 5 3 9 9 C 1.46967 * 120.65576 * 354.24365 * 8 6 5 10 10 C 1.53193 * 108.89182 * 233.53533 * 9 8 6 11 11 C 1.53042 * 109.30726 * 305.44124 * 10 9 8 12 12 C 1.53042 * 109.53920 * 61.36871 * 11 10 9 13 13 H 1.08992 * 109.49970 * 58.58418 * 12 11 10 14 14 C 1.53005 * 109.52302 * 178.66216 * 12 11 10 15 15 N 1.46498 * 109.47270 * 184.84836 * 14 12 11 16 16 C 1.36931 * 120.00187 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00229 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99927 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99808 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99855 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47002 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47558 * 119.99589 * 20 18 16 23 23 H 1.48508 * 109.46795 * 239.99742 * 20 18 16 24 24 C 1.46932 * 120.63407 * 174.42507 * 8 6 5 25 25 H 1.09006 * 109.47362 * 59.99758 * 1 2 3 26 26 H 1.08999 * 109.47733 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47179 * 300.00633 * 1 2 3 28 28 H 1.09000 * 109.47261 * 239.99686 * 2 1 3 29 29 H 1.09004 * 109.47319 * 119.99691 * 2 1 3 30 30 H 1.08998 * 109.47435 * 263.67664 * 4 3 2 31 31 H 1.08997 * 109.47714 * 23.68224 * 4 3 2 32 32 H 1.09004 * 109.47018 * 143.67569 * 4 3 2 33 33 H 1.08002 * 120.00160 * 352.14534 * 5 3 2 34 34 H 1.08996 * 109.46842 * 113.74859 * 9 8 6 35 35 H 1.09005 * 109.70988 * 353.46570 * 9 8 6 36 36 H 1.08994 * 109.49771 * 185.48760 * 10 9 8 37 37 H 1.09002 * 109.49338 * 65.38725 * 10 9 8 38 38 H 1.09000 * 109.46359 * 301.33918 * 11 10 9 39 39 H 1.09003 * 109.44600 * 181.37408 * 11 10 9 40 40 H 1.08996 * 109.47351 * 304.85554 * 14 12 11 41 41 H 1.09011 * 109.46663 * 64.85188 * 14 12 11 42 42 H 0.97003 * 119.99568 * 0.02562 * 15 14 12 43 43 H 0.97001 * 119.99192 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.58319 * 6.60508 * 24 8 6 45 45 H 1.09000 * 109.58428 * 246.32383 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1763 2.1690 -1.3002 5 6 2.3487 2.0143 1.1473 6 6 2.9997 3.3334 1.1380 7 8 3.3590 3.8267 0.0861 8 7 3.1980 3.9951 2.2952 9 6 2.6591 3.4730 3.5589 10 6 1.8263 4.5679 4.2331 11 6 2.6788 5.8296 4.3869 12 6 3.1066 6.3298 3.0052 13 1 2.2218 6.5364 2.4031 14 6 3.9308 7.6099 3.1575 15 7 4.2416 8.1512 1.8322 16 6 4.9759 9.3012 1.7172 17 1 5.3257 9.8095 2.6037 18 6 5.2699 9.8144 0.4614 19 7 4.8432 9.1953 -0.6189 20 14 6.2723 11.3829 0.3046 21 1 6.6287 11.8798 1.6579 22 1 7.5124 11.1033 -0.4630 23 1 5.4721 12.4128 -0.4056 24 6 3.9539 5.2549 2.3172 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.2076 2.1009 -1.6464 31 1 1.5130 1.7318 -2.0464 32 1 1.9124 3.2156 -1.1483 33 1 2.1275 1.5278 2.0859 34 1 3.4819 3.1847 4.2131 35 1 2.0296 2.6056 3.3596 36 1 1.5025 4.2255 5.2158 37 1 0.9537 4.7910 3.6192 38 1 3.5639 5.5998 4.9800 39 1 2.0961 6.6023 4.8884 40 1 3.3598 8.3444 3.7253 41 1 4.8581 7.3843 3.6844 42 1 3.9271 7.6949 1.0360 43 1 5.0490 9.5538 -1.4964 44 1 4.1781 5.5643 1.2964 45 1 4.8833 5.1137 2.8687 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480280807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:38 Heat of formation + Delta-G solvation = -44.602956 kcal Electronic energy + Delta-G solvation = -22419.120561 eV Core-core repulsion = 19242.663795 eV Total energy + Delta-G solvation = -3176.456766 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.30861 -39.10743 -37.02390 -36.58749 -34.46806 -33.07512 -31.98489 -31.32231 -29.04519 -27.19338 -26.41663 -24.92481 -24.59639 -22.68954 -21.82215 -20.55325 -19.21036 -18.84591 -18.29630 -16.79831 -16.70332 -16.32667 -15.78927 -15.69371 -15.37191 -15.23744 -15.14418 -14.83365 -14.28294 -14.14760 -14.06258 -13.87412 -13.63721 -13.47556 -13.04594 -13.02021 -12.93356 -12.77936 -12.49919 -12.24358 -12.14422 -12.00206 -11.94476 -11.78564 -11.71957 -11.48050 -11.30444 -10.99122 -10.52973 -10.13018 -9.48809 -9.03363 -7.96148 -5.27111 0.40867 1.43708 1.46232 1.56377 2.08365 2.30580 2.53915 3.36623 3.55982 3.72390 3.82886 3.89923 3.94114 4.08669 4.12886 4.22373 4.34522 4.36972 4.45356 4.49376 4.62301 4.63097 4.73810 4.77851 4.80815 4.84121 4.90052 4.91095 5.02277 5.04084 5.09850 5.12395 5.17582 5.23333 5.33338 5.39623 5.45659 5.50104 5.53840 5.57956 5.69253 6.24227 6.54529 7.27238 7.29398 8.05812 8.28333 9.27584 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019581 B = 0.003970 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.594841 B = 7051.649953 C = 8229.422422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.024 4.024 4 C -0.123 4.123 5 C -0.238 4.238 6 C 0.525 3.475 7 O -0.589 6.589 8 N -0.610 5.610 9 C 0.100 3.900 10 C -0.127 4.127 11 C -0.106 4.106 12 C -0.094 4.094 13 H 0.047 0.953 14 C 0.158 3.842 15 N -0.749 5.749 16 C -0.246 4.246 17 H 0.080 0.920 18 C -0.082 4.082 19 N -0.973 5.973 20 Si 0.979 3.021 21 H -0.261 1.261 22 H -0.294 1.294 23 H -0.292 1.292 24 C 0.128 3.872 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.165 0.835 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.370 0.630 43 H 0.250 0.750 44 H 0.047 0.953 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.089 -22.197 10.887 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.026 4.026 4 C -0.179 4.179 5 C -0.258 4.258 6 C 0.318 3.682 7 O -0.472 6.472 8 N -0.341 5.341 9 C -0.021 4.021 10 C -0.165 4.165 11 C -0.144 4.144 12 C -0.114 4.114 13 H 0.065 0.935 14 C 0.031 3.969 15 N -0.392 5.392 16 C -0.377 4.377 17 H 0.098 0.902 18 C -0.274 4.274 19 N -0.623 5.623 20 Si 0.807 3.193 21 H -0.185 1.185 22 H -0.221 1.221 23 H -0.220 1.220 24 C 0.005 3.995 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.182 0.818 34 H 0.104 0.896 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.201 0.799 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.806 -21.796 10.474 26.095 hybrid contribution 0.696 1.363 -1.069 1.867 sum -9.110 -20.433 9.405 24.268 Atomic orbital electron populations 1.21733 0.93382 1.03043 1.02197 1.20817 0.97176 0.89990 1.04715 1.22854 0.89305 0.96206 0.94227 1.21023 1.01824 0.99745 0.95350 1.22540 1.07821 0.94849 1.00612 1.19431 0.79311 0.86656 0.82780 1.90811 1.53840 1.70470 1.32093 1.48177 1.54222 1.23120 1.08623 1.22147 0.98774 0.97611 0.83541 1.21913 0.97688 0.94486 1.02400 1.21514 1.00832 0.98246 0.93828 1.21530 0.97442 0.93821 0.98568 0.93483 1.20849 0.96239 0.92843 0.86933 1.42704 1.64432 1.28549 1.03500 1.19726 1.24626 1.00782 0.92603 0.90192 1.25704 1.03402 1.03068 0.95181 1.69893 1.52495 1.42627 0.97325 0.84993 0.77520 0.78808 0.77941 1.18527 1.22095 1.21964 1.21317 0.93959 0.83512 1.00707 0.93130 0.90305 0.92324 0.89472 0.88756 0.91958 0.90466 0.92923 0.81822 0.89598 0.87039 0.86925 0.92654 0.90290 0.90700 0.95526 0.95518 0.79859 0.94136 0.93425 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.89 71.98 0.71 -0.86 16 2 C -0.09 -1.13 6.08 29.85 0.18 -0.95 16 3 C -0.02 -0.51 5.36 -17.62 -0.09 -0.60 16 4 C -0.12 -3.33 8.45 71.24 0.60 -2.73 16 5 C -0.24 -5.40 8.79 23.43 0.21 -5.19 16 6 C 0.52 17.60 7.47 86.57 0.65 18.24 16 7 O -0.59 -26.19 12.74 -4.08 -0.05 -26.24 16 8 N -0.61 -18.18 2.98 -823.06 -2.45 -20.63 16 9 C 0.10 1.79 6.29 86.36 0.54 2.34 16 10 C -0.13 -2.19 6.08 30.67 0.19 -2.00 16 11 C -0.11 -2.45 5.17 30.62 0.16 -2.29 16 12 C -0.09 -3.26 2.38 -10.71 -0.03 -3.28 16 13 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 14 C 0.16 6.66 5.66 86.38 0.49 7.15 16 15 N -0.75 -41.42 5.38 -343.44 -1.85 -43.26 16 16 C -0.25 -14.57 9.99 84.04 0.84 -13.73 16 17 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 18 C -0.08 -5.00 5.50 84.86 0.47 -4.53 16 19 N -0.97 -64.35 13.06 21.65 0.28 -64.06 16 20 Si 0.98 48.56 29.55 68.60 2.03 50.59 16 21 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 23 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 24 C 0.13 4.75 5.52 86.36 0.48 5.23 16 25 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 26 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.09 0.85 8.04 -2.38 -0.02 0.84 16 30 H 0.06 1.88 7.98 -2.39 -0.02 1.86 16 31 H 0.08 1.62 8.09 -2.39 -0.02 1.60 16 32 H 0.05 1.83 6.27 -2.39 -0.01 1.82 16 33 H 0.16 2.32 6.11 -2.91 -0.02 2.30 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.11 1.36 5.48 -2.38 -0.01 1.35 16 36 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.37 22.51 6.89 -92.71 -0.64 21.87 16 43 H 0.25 15.95 8.31 -92.71 -0.77 15.18 16 44 H 0.05 2.30 6.20 -2.39 -0.01 2.29 16 45 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -79.99 354.70 3.66 -76.32 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: 0.32 Total: 30.49 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 5.39 Total: -3.21 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -4.02 Total: -127.96 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.05 Total: -26.24 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.03 Total: 50.59 kcal Total: -79.99 3.66 -76.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480280807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.719 kcal (2) G-P(sol) polarization free energy of solvation -79.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds