Wall clock time and date at job start Fri Apr 10 2020 17:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47334 * 2 1 4 4 C 1.32994 * 120.00285 * 94.99508 * 3 2 1 5 5 C 1.47098 * 120.00393 * 171.73868 * 4 3 2 6 6 O 1.21609 * 119.99729 * 356.69649 * 5 4 3 7 7 N 1.34774 * 120.00246 * 176.69220 * 5 4 3 8 8 C 1.46495 * 120.00337 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47576 * 185.08239 * 8 7 5 10 10 H 1.09004 * 110.00013 * 300.83770 * 9 8 7 11 11 C 1.54326 * 109.87979 * 61.92862 * 9 8 7 12 12 C 1.55448 * 102.96888 * 141.61509 * 11 9 8 13 13 C 1.54913 * 101.44567 * 324.51585 * 12 11 9 14 14 N 1.47019 * 109.88555 * 179.73996 * 9 8 7 15 15 C 1.36928 * 125.64965 * 61.61777 * 14 9 8 16 16 H 1.08005 * 120.00157 * 16.27345 * 15 14 9 17 17 C 1.38815 * 120.00170 * 196.26748 * 15 14 9 18 18 N 1.31613 * 119.99932 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00066 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47360 * 90.00328 * 19 17 15 21 21 H 1.48498 * 109.47445 * 210.00248 * 19 17 15 22 22 H 1.48498 * 109.47267 * 330.00375 * 19 17 15 23 23 C 1.50700 * 119.99900 * 275.00122 * 3 2 1 24 24 C 1.52997 * 109.46939 * 269.07999 * 23 3 2 25 25 H 1.08998 * 109.47389 * 300.00030 * 1 2 3 26 26 H 1.09004 * 109.46955 * 60.00053 * 1 2 3 27 27 H 1.09004 * 109.47358 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47389 * 239.99970 * 2 1 3 29 29 H 1.08998 * 109.47110 * 119.99503 * 2 1 3 30 30 H 1.08004 * 119.99738 * 351.74398 * 4 3 2 31 31 H 0.97007 * 120.00104 * 0.02562 * 7 5 4 32 32 H 1.08996 * 109.47053 * 65.08312 * 8 7 5 33 33 H 1.09001 * 109.47175 * 305.08578 * 8 7 5 34 34 H 1.09003 * 110.71840 * 259.97563 * 11 9 8 35 35 H 1.08998 * 110.72155 * 23.24712 * 11 9 8 36 36 H 1.09000 * 111.11775 * 206.46670 * 12 11 9 37 37 H 1.08996 * 111.01620 * 82.52283 * 12 11 9 38 38 H 1.09000 * 110.36521 * 278.10837 * 13 12 11 39 39 H 1.09010 * 110.36286 * 155.90066 * 13 12 11 40 40 H 0.97006 * 120.00379 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.47346 * 29.08572 * 23 3 2 42 42 H 1.09002 * 109.47209 * 149.08349 * 23 3 2 43 43 H 1.09002 * 109.46884 * 60.00151 * 24 23 3 44 44 H 1.09006 * 109.46994 * 180.02562 * 24 23 3 45 45 H 1.08994 * 109.47569 * 300.00436 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3486 2.0144 1.1474 5 6 3.0076 3.3294 1.1380 6 8 3.3175 3.8467 0.0820 7 7 3.2678 3.9611 2.2998 8 6 3.9236 5.2710 2.2905 9 6 4.2151 5.7057 3.7282 10 1 3.2867 5.7600 4.2968 11 6 5.1806 4.7027 4.3942 12 6 6.1043 5.6196 5.2443 13 6 6.2141 6.8708 4.3376 14 7 4.8793 7.0174 3.7291 15 6 4.3467 8.1820 3.2445 16 1 3.2849 8.2548 3.0607 17 6 5.1713 9.2692 2.9896 18 7 6.4652 9.1804 3.2132 19 14 4.4445 10.8581 2.3292 20 1 4.0568 11.7344 3.4638 21 1 5.4535 11.5527 1.4897 22 1 3.2453 10.5507 1.5090 23 6 2.1763 2.1691 -1.3001 24 6 3.5872 1.9619 -1.8543 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 2.1216 1.5308 2.0860 31 1 3.0209 3.5483 3.1422 32 1 3.2689 6.0017 1.8157 33 1 4.8587 5.2053 1.7341 34 1 4.6347 4.0077 5.0323 35 1 5.7577 4.1653 3.6419 36 1 7.0810 5.1603 5.3964 37 1 5.6382 5.8677 6.1979 38 1 6.9679 6.7150 3.5659 39 1 6.4582 7.7506 4.9332 40 1 7.0416 9.9399 3.0348 41 1 1.4456 1.7953 -2.0174 42 1 2.0058 3.2319 -1.1285 43 1 3.7576 0.8991 -2.0260 44 1 3.6915 2.5036 -2.7945 45 1 4.3178 2.3358 -1.1371 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481034202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:48 Heat of formation + Delta-G solvation = -13.893418 kcal Electronic energy + Delta-G solvation = -22323.872262 eV Core-core repulsion = 19148.747162 eV Total energy + Delta-G solvation = -3175.125100 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -39.69791 -37.77728 -36.44705 -34.15256 -32.46519 -31.92934 -30.41991 -29.48221 -28.42336 -25.27160 -24.51508 -23.42780 -23.28327 -20.73539 -20.11270 -19.59699 -18.36034 -17.03102 -16.47980 -15.79634 -15.11842 -14.82439 -14.74821 -14.53981 -14.06993 -13.95494 -13.68802 -13.26039 -13.04422 -12.75707 -12.53783 -12.10019 -12.07155 -11.88478 -11.83969 -11.68867 -11.42817 -11.27024 -10.94150 -10.85852 -10.77247 -10.68588 -10.19670 -10.08847 -9.91091 -9.81824 -9.71920 -9.23324 -9.09094 -8.58854 -8.44042 -6.81298 -5.76410 -3.13164 1.44186 3.40078 3.46428 3.48258 3.56923 3.63227 4.49376 4.60733 4.67986 4.98242 5.05787 5.24110 5.30592 5.35967 5.43177 5.45524 5.52804 5.60108 5.61738 5.64069 5.66592 5.70132 5.82983 5.92126 5.97398 6.09660 6.15565 6.25852 6.26473 6.41710 6.47895 6.48941 6.57079 6.63772 6.67844 6.79384 6.90864 7.11123 7.51013 7.63062 7.79449 7.93999 8.26820 8.64220 9.18402 9.78997 10.47265 11.36086 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020568 B = 0.003838 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.001525 B = 7294.366134 C = 8021.742852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.032 4.032 4 C -0.224 4.224 5 C 0.535 3.465 6 O -0.538 6.538 7 N -0.721 5.721 8 C 0.111 3.889 9 C 0.151 3.849 10 H 0.036 0.964 11 C -0.126 4.126 12 C -0.149 4.149 13 C 0.173 3.827 14 N -0.589 5.589 15 C -0.234 4.234 16 H 0.075 0.925 17 C 0.000 4.000 18 N -0.915 5.915 19 Si 0.910 3.090 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.279 1.279 23 C -0.100 4.100 24 C -0.131 4.131 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.122 0.878 31 H 0.394 0.606 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.027 0.973 39 H 0.068 0.932 40 H 0.254 0.746 41 H 0.055 0.945 42 H 0.102 0.898 43 H 0.040 0.960 44 H 0.052 0.948 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.144 -18.357 -2.179 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.034 4.034 4 C -0.245 4.245 5 C 0.324 3.676 6 O -0.418 6.418 7 N -0.371 5.371 8 C -0.014 4.014 9 C 0.043 3.957 10 H 0.054 0.946 11 C -0.164 4.164 12 C -0.187 4.187 13 C 0.048 3.952 14 N -0.313 5.313 15 C -0.363 4.363 16 H 0.093 0.907 17 C -0.198 4.198 18 N -0.561 5.561 19 Si 0.740 3.260 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.205 1.205 23 C -0.137 4.137 24 C -0.189 4.189 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.140 0.860 31 H 0.227 0.773 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.120 0.880 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.803 -17.702 -2.970 19.572 hybrid contribution -0.440 0.632 0.096 0.776 sum -8.243 -17.070 -2.874 19.173 Atomic orbital electron populations 1.21724 0.94425 1.01828 1.02464 1.20739 0.96511 0.92924 1.03097 1.22508 0.90998 0.94556 0.95372 1.22461 1.06491 0.96990 0.98573 1.18549 0.79668 0.85340 0.84037 1.90732 1.52912 1.68009 1.30153 1.46069 1.61327 1.21655 1.08053 1.22161 0.97199 0.81705 1.00302 1.21135 0.95164 0.87377 0.92031 0.94602 1.22641 0.97985 0.97014 0.98726 1.23051 0.98135 0.98720 0.98829 1.21419 0.86870 0.93670 0.93218 1.44465 1.15282 1.01799 1.69779 1.18972 0.91920 0.88469 1.36911 0.90732 1.24941 0.95343 0.98974 1.00525 1.69937 1.02697 1.30474 1.52952 0.86155 0.78006 0.83215 0.78617 1.21533 1.21578 1.20498 1.20925 0.97680 1.02304 0.92777 1.21541 0.96610 0.99685 1.01028 0.92370 0.92374 0.92312 0.90521 0.90853 0.86028 0.77279 0.91789 0.91626 0.92461 0.91828 0.92341 0.92334 0.95488 0.91329 0.93604 0.92614 0.87974 0.94123 0.92863 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.15 0.37 -0.68 16 2 C -0.10 -0.77 6.10 -27.89 -0.17 -0.94 16 3 C -0.03 -0.36 4.61 -101.17 -0.47 -0.83 16 4 C -0.22 -2.69 9.60 -37.81 -0.36 -3.05 16 5 C 0.54 8.48 7.64 -12.67 -0.10 8.39 16 6 O -0.54 -10.30 11.35 5.27 0.06 -10.24 16 7 N -0.72 -11.10 5.29 -61.50 -0.33 -11.42 16 8 C 0.11 2.19 5.05 -4.04 -0.02 2.17 16 9 C 0.15 3.02 3.25 -66.95 -0.22 2.80 16 10 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 11 C -0.13 -2.11 5.97 -24.74 -0.15 -2.26 16 12 C -0.15 -2.74 7.11 -24.42 -0.17 -2.91 16 13 C 0.17 4.16 5.38 -2.53 -0.01 4.14 16 14 N -0.59 -14.75 3.13 -162.57 -0.51 -15.26 16 15 C -0.23 -6.47 9.80 -15.06 -0.15 -6.62 16 16 H 0.07 2.02 7.83 -52.48 -0.41 1.60 16 17 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 18 N -0.91 -26.82 10.64 55.49 0.59 -26.23 16 19 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C -0.10 -1.24 5.33 -27.88 -0.15 -1.39 16 24 C -0.13 -1.67 9.39 37.16 0.35 -1.32 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.53 8.04 -51.93 -0.42 0.11 16 30 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 31 H 0.39 4.86 8.23 -40.82 -0.34 4.52 16 32 H 0.06 1.42 7.99 -51.93 -0.42 1.01 16 33 H 0.07 1.46 8.13 -51.93 -0.42 1.04 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.07 7.84 -51.93 -0.41 0.67 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.03 0.71 8.02 -51.93 -0.42 0.29 16 39 H 0.07 1.83 7.04 -51.92 -0.37 1.46 16 40 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.06 0.59 8.12 -51.93 -0.42 0.16 16 42 H 0.10 1.57 5.78 -51.93 -0.30 1.27 16 43 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 1.03 6.61 -51.93 -0.34 0.68 16 LS Contribution 357.29 15.07 5.38 5.38 Total: -1.00 -31.06 357.29 -9.21 -40.27 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -8.04 Total: 2.88 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -1.34 Total: -2.61 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.24 Total: -52.91 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.06 Total: -10.24 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.06 -9.21 -40.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481034202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.378 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds