Wall clock time and date at job start Fri Apr 10 2020 17:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47334 * 2 1 4 4 C 1.32994 * 120.00285 * 94.99508 * 3 2 1 5 5 C 1.47098 * 120.00393 * 171.73868 * 4 3 2 6 6 O 1.21609 * 119.99729 * 356.69649 * 5 4 3 7 7 N 1.34774 * 120.00246 * 176.69220 * 5 4 3 8 8 C 1.46495 * 120.00337 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47576 * 185.08239 * 8 7 5 10 10 H 1.09004 * 110.00013 * 300.83770 * 9 8 7 11 11 C 1.54326 * 109.87979 * 61.92862 * 9 8 7 12 12 C 1.55448 * 102.96888 * 141.61509 * 11 9 8 13 13 C 1.54913 * 101.44567 * 324.51585 * 12 11 9 14 14 N 1.47019 * 109.88555 * 179.73996 * 9 8 7 15 15 C 1.36928 * 125.64965 * 61.61777 * 14 9 8 16 16 H 1.08005 * 120.00157 * 16.27345 * 15 14 9 17 17 C 1.38815 * 120.00170 * 196.26748 * 15 14 9 18 18 N 1.31613 * 119.99932 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00066 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47360 * 90.00328 * 19 17 15 21 21 H 1.48498 * 109.47445 * 210.00248 * 19 17 15 22 22 H 1.48498 * 109.47267 * 330.00375 * 19 17 15 23 23 C 1.50700 * 119.99900 * 275.00122 * 3 2 1 24 24 C 1.52997 * 109.46939 * 269.07999 * 23 3 2 25 25 H 1.08998 * 109.47389 * 300.00030 * 1 2 3 26 26 H 1.09004 * 109.46955 * 60.00053 * 1 2 3 27 27 H 1.09004 * 109.47358 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47389 * 239.99970 * 2 1 3 29 29 H 1.08998 * 109.47110 * 119.99503 * 2 1 3 30 30 H 1.08004 * 119.99738 * 351.74398 * 4 3 2 31 31 H 0.97007 * 120.00104 * 0.02562 * 7 5 4 32 32 H 1.08996 * 109.47053 * 65.08312 * 8 7 5 33 33 H 1.09001 * 109.47175 * 305.08578 * 8 7 5 34 34 H 1.09003 * 110.71840 * 259.97563 * 11 9 8 35 35 H 1.08998 * 110.72155 * 23.24712 * 11 9 8 36 36 H 1.09000 * 111.11775 * 206.46670 * 12 11 9 37 37 H 1.08996 * 111.01620 * 82.52283 * 12 11 9 38 38 H 1.09000 * 110.36521 * 278.10837 * 13 12 11 39 39 H 1.09010 * 110.36286 * 155.90066 * 13 12 11 40 40 H 0.97006 * 120.00379 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.47346 * 29.08572 * 23 3 2 42 42 H 1.09002 * 109.47209 * 149.08349 * 23 3 2 43 43 H 1.09002 * 109.46884 * 60.00151 * 24 23 3 44 44 H 1.09006 * 109.46994 * 180.02562 * 24 23 3 45 45 H 1.08994 * 109.47569 * 300.00436 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3486 2.0144 1.1474 5 6 3.0076 3.3294 1.1380 6 8 3.3175 3.8467 0.0820 7 7 3.2678 3.9611 2.2998 8 6 3.9236 5.2710 2.2905 9 6 4.2151 5.7057 3.7282 10 1 3.2867 5.7600 4.2968 11 6 5.1806 4.7027 4.3942 12 6 6.1043 5.6196 5.2443 13 6 6.2141 6.8708 4.3376 14 7 4.8793 7.0174 3.7291 15 6 4.3467 8.1820 3.2445 16 1 3.2849 8.2548 3.0607 17 6 5.1713 9.2692 2.9896 18 7 6.4652 9.1804 3.2132 19 14 4.4445 10.8581 2.3292 20 1 4.0568 11.7344 3.4638 21 1 5.4535 11.5527 1.4897 22 1 3.2453 10.5507 1.5090 23 6 2.1763 2.1691 -1.3001 24 6 3.5872 1.9619 -1.8543 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 2.1216 1.5308 2.0860 31 1 3.0209 3.5483 3.1422 32 1 3.2689 6.0017 1.8157 33 1 4.8587 5.2053 1.7341 34 1 4.6347 4.0077 5.0323 35 1 5.7577 4.1653 3.6419 36 1 7.0810 5.1603 5.3964 37 1 5.6382 5.8677 6.1979 38 1 6.9679 6.7150 3.5659 39 1 6.4582 7.7506 4.9332 40 1 7.0416 9.9399 3.0348 41 1 1.4456 1.7953 -2.0174 42 1 2.0058 3.2319 -1.1285 43 1 3.7576 0.8991 -2.0260 44 1 3.6915 2.5036 -2.7945 45 1 4.3178 2.3358 -1.1371 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481034202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:48 Heat of formation + Delta-G solvation = -32.888924 kcal Electronic energy + Delta-G solvation = -22324.695969 eV Core-core repulsion = 19148.747162 eV Total energy + Delta-G solvation = -3175.948807 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.96638 -39.38892 -37.46644 -35.63326 -34.40298 -32.75835 -31.68910 -31.16706 -29.90035 -26.82735 -26.11185 -24.72202 -24.16173 -22.15092 -21.67314 -21.19952 -19.53004 -18.69061 -17.87817 -17.22764 -16.69238 -16.20271 -15.99262 -15.93137 -15.61196 -15.13847 -14.81082 -14.54725 -14.24518 -13.96571 -13.72948 -13.66682 -13.47208 -13.36367 -12.97354 -12.92405 -12.87238 -12.65568 -12.56640 -12.12835 -12.04683 -11.89092 -11.81698 -11.69449 -11.57150 -11.49211 -11.40816 -10.68820 -10.47545 -10.15079 -9.77027 -8.86113 -7.90969 -5.28802 0.46230 1.42345 1.44759 1.53087 2.30878 2.38968 2.50789 3.29383 3.68516 3.82365 3.84975 3.95428 3.99403 4.22800 4.27041 4.35856 4.44638 4.46122 4.46361 4.54495 4.63263 4.69833 4.73105 4.82748 4.94766 4.97653 5.00315 5.04556 5.13744 5.14187 5.19910 5.25551 5.36594 5.42182 5.44584 5.47298 5.57783 5.63187 5.66975 5.74092 5.76062 6.21568 6.74477 7.07420 7.42315 7.74510 8.41166 9.20539 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020568 B = 0.003838 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.001525 B = 7294.366134 C = 8021.742852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.021 4.021 4 C -0.233 4.233 5 C 0.526 3.474 6 O -0.579 6.579 7 N -0.708 5.708 8 C 0.135 3.865 9 C 0.147 3.853 10 H 0.051 0.949 11 C -0.111 4.111 12 C -0.133 4.133 13 C 0.174 3.826 14 N -0.611 5.611 15 C -0.242 4.242 16 H 0.075 0.925 17 C -0.059 4.059 18 N -0.945 5.945 19 Si 0.972 3.028 20 H -0.280 1.280 21 H -0.294 1.294 22 H -0.273 1.273 23 C -0.104 4.104 24 C -0.127 4.127 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.158 0.842 31 H 0.414 0.586 32 H 0.028 0.972 33 H 0.030 0.970 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.072 0.928 38 H -0.009 1.009 39 H 0.033 0.967 40 H 0.248 0.752 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.049 0.951 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.974 -21.576 -1.236 23.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.023 4.023 4 C -0.254 4.254 5 C 0.318 3.682 6 O -0.462 6.462 7 N -0.360 5.360 8 C 0.008 3.992 9 C 0.040 3.960 10 H 0.068 0.932 11 C -0.149 4.149 12 C -0.171 4.171 13 C 0.049 3.951 14 N -0.336 5.336 15 C -0.371 4.371 16 H 0.093 0.907 17 C -0.253 4.253 18 N -0.593 5.593 19 Si 0.800 3.200 20 H -0.207 1.207 21 H -0.221 1.221 22 H -0.198 1.198 23 C -0.141 4.141 24 C -0.185 4.185 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.175 0.825 31 H 0.250 0.750 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.124 0.876 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.009 0.991 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.673 -20.972 -1.994 23.181 hybrid contribution 0.086 1.585 -0.278 1.611 sum -9.587 -19.387 -2.272 21.747 Atomic orbital electron populations 1.21728 0.93558 1.02922 1.02144 1.20803 0.97053 0.90405 1.04536 1.22800 0.89348 0.95952 0.94155 1.22466 1.07337 0.94971 1.00592 1.19326 0.79156 0.86536 0.83214 1.90736 1.54518 1.69307 1.31649 1.45788 1.60960 1.19988 1.09270 1.21550 0.95068 0.83212 0.99396 1.21346 0.96277 0.86126 0.92241 0.93162 1.22624 0.97080 0.96437 0.98754 1.22921 1.00163 0.95942 0.98114 1.21238 0.85842 0.95195 0.92789 1.44743 1.15787 1.03193 1.69882 1.19285 0.92119 0.89768 1.35931 0.90729 1.25721 0.95814 1.02182 1.01571 1.70138 1.03778 1.30933 1.54427 0.85180 0.77180 0.79600 0.78012 1.20689 1.22089 1.19843 1.20882 0.98013 1.00658 0.94500 1.21481 0.95999 1.01032 0.99957 0.92551 0.92934 0.90523 0.89439 0.89111 0.82477 0.74956 0.95315 0.95110 0.87580 0.91881 0.89876 0.90980 0.99095 0.94888 0.94281 0.90409 0.91469 0.91601 0.93188 0.94524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.89 71.98 0.71 -0.84 16 2 C -0.09 -1.10 6.10 29.85 0.18 -0.92 16 3 C -0.02 -0.41 4.61 -17.62 -0.08 -0.49 16 4 C -0.23 -5.04 9.60 23.43 0.22 -4.81 16 5 C 0.53 16.53 7.64 86.57 0.66 17.19 16 6 O -0.58 -23.14 11.35 -4.06 -0.05 -23.19 16 7 N -0.71 -21.14 5.29 -466.74 -2.47 -23.61 16 8 C 0.13 5.42 5.05 86.38 0.44 5.86 16 9 C 0.15 5.78 3.25 45.34 0.15 5.93 16 10 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 11 C -0.11 -3.43 5.97 31.89 0.19 -3.24 16 12 C -0.13 -4.64 7.11 32.09 0.23 -4.42 16 13 C 0.17 8.63 5.38 86.86 0.47 9.10 16 14 N -0.61 -31.38 3.13 -668.24 -2.09 -33.47 16 15 C -0.24 -13.78 9.80 84.04 0.82 -12.96 16 16 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 17 C -0.06 -3.44 5.47 84.86 0.46 -2.97 16 18 N -0.95 -58.01 10.64 21.65 0.23 -57.78 16 19 Si 0.97 47.16 29.55 68.60 2.03 49.18 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 21 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 22 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 23 C -0.10 -2.50 5.33 29.85 0.16 -2.34 16 24 C -0.13 -3.20 9.39 71.98 0.68 -2.52 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.09 0.86 8.04 -2.39 -0.02 0.84 16 30 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.41 8.99 8.23 -92.70 -0.76 8.23 16 32 H 0.03 1.34 7.99 -2.39 -0.02 1.32 16 33 H 0.03 1.44 8.13 -2.39 -0.02 1.42 16 34 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.06 1.98 7.84 -2.39 -0.02 1.96 16 36 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 38 H -0.01 -0.50 8.02 -2.39 -0.02 -0.52 16 39 H 0.03 1.83 7.04 -2.38 -0.02 1.81 16 40 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 41 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 42 H 0.07 2.14 5.78 -2.39 -0.01 2.12 16 43 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.04 1.14 6.61 -2.39 -0.02 1.12 16 Total: -1.00 -73.34 357.29 3.13 -70.21 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.19 Total: 16.08 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 5.29 Total: 2.57 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -4.33 Total: -114.86 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.05 Total: -23.19 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Total: -73.34 3.13 -70.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481034202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.325 kcal (2) G-P(sol) polarization free energy of solvation -73.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds