Wall clock time and date at job start Fri Apr 10 2020 17:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46797 * 2 1 4 4 C 1.32994 * 120.00142 * 95.00132 * 3 2 1 5 5 C 1.47099 * 120.00043 * 171.96065 * 4 3 2 6 6 O 1.21612 * 119.99978 * 357.24707 * 5 4 3 7 7 N 1.34780 * 119.99811 * 177.52260 * 5 4 3 8 8 C 1.46498 * 119.99640 * 179.72001 * 7 5 4 9 9 C 1.52999 * 109.46805 * 174.84584 * 8 7 5 10 10 H 1.09000 * 109.87188 * 53.81803 * 9 8 7 11 11 C 1.54323 * 109.88823 * 292.79954 * 9 8 7 12 12 C 1.55156 * 102.94440 * 218.39159 * 11 9 8 13 13 C 1.54905 * 101.58165 * 35.50070 * 12 11 9 14 14 N 1.47031 * 109.88352 * 174.98947 * 9 8 7 15 15 C 1.36939 * 125.64462 * 298.34278 * 14 9 8 16 16 H 1.07995 * 120.00577 * 344.13745 * 15 14 9 17 17 C 1.38816 * 119.99514 * 164.14102 * 15 14 9 18 18 N 1.31622 * 120.00008 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99870 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46841 * 60.00021 * 19 17 15 21 21 H 1.48494 * 109.47113 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47153 * 300.00301 * 19 17 15 23 23 C 1.50697 * 120.00023 * 275.00084 * 3 2 1 24 24 C 1.53000 * 109.46899 * 268.15863 * 23 3 2 25 25 H 1.09002 * 109.47172 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47276 * 300.00024 * 1 2 3 27 27 H 1.08998 * 109.47417 * 60.00295 * 1 2 3 28 28 H 1.08991 * 109.47005 * 240.00147 * 2 1 3 29 29 H 1.08993 * 109.46957 * 119.99682 * 2 1 3 30 30 H 1.07999 * 119.99664 * 351.95738 * 4 3 2 31 31 H 0.97001 * 119.99908 * 359.73211 * 7 5 4 32 32 H 1.08997 * 109.47879 * 294.85080 * 8 7 5 33 33 H 1.09002 * 109.46844 * 54.85531 * 8 7 5 34 34 H 1.09003 * 110.71896 * 336.75547 * 11 9 8 35 35 H 1.09005 * 110.72219 * 100.02202 * 11 9 8 36 36 H 1.08998 * 111.00159 * 153.57393 * 12 11 9 37 37 H 1.09000 * 111.00022 * 277.42584 * 12 11 9 38 38 H 1.08992 * 110.36967 * 81.83145 * 13 12 11 39 39 H 1.09000 * 110.36485 * 204.04512 * 13 12 11 40 40 H 0.97005 * 119.99593 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.47315 * 28.15349 * 23 3 2 42 42 H 1.08996 * 109.47460 * 148.15672 * 23 3 2 43 43 H 1.09007 * 109.47192 * 179.97438 * 24 23 3 44 44 H 1.09000 * 109.47578 * 300.00107 * 24 23 3 45 45 H 1.09006 * 109.47340 * 60.00209 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3486 2.0144 1.1474 5 6 3.0031 3.3317 1.1380 6 8 3.3002 3.8556 0.0815 7 7 3.2784 3.9556 2.3006 8 6 3.9357 5.2648 2.2914 9 6 4.0155 5.8053 3.7205 10 1 4.4924 5.0701 4.3687 11 6 2.5981 6.1232 4.2415 12 6 2.8114 7.4261 5.0565 13 6 3.8990 8.1428 4.2181 14 7 4.7789 7.0618 3.7380 15 6 6.0901 7.2041 3.3697 16 1 6.7229 6.3337 3.2782 17 6 6.6060 8.4672 3.1141 18 7 5.8347 9.5280 3.2252 19 14 8.3948 8.6615 2.6123 20 1 8.6400 7.9123 1.3538 21 1 8.6954 10.0999 2.3982 22 1 9.2708 8.1266 3.6855 23 6 2.1761 2.1692 -1.3001 24 6 3.5943 1.9809 -1.8426 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.1248 1.5292 2.0859 31 1 3.0414 3.5377 3.1433 32 1 4.9418 5.1635 1.8846 33 1 3.3617 5.9552 1.6734 34 1 1.9119 6.2951 3.4121 35 1 2.2345 5.3213 4.8842 36 1 1.8961 8.0166 5.0958 37 1 3.1747 7.2041 6.0599 38 1 3.4457 8.6653 3.3758 39 1 4.4585 8.8414 4.8403 40 1 6.1952 10.4106 3.0462 41 1 1.4566 1.7840 -2.0227 42 1 1.9894 3.2297 -1.1315 43 1 3.6982 2.5218 -2.7833 44 1 4.3139 2.3661 -1.1202 45 1 3.7810 0.9203 -2.0113 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481034203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:21:53 Heat of formation + Delta-G solvation = -13.736886 kcal Electronic energy + Delta-G solvation = -22319.256194 eV Core-core repulsion = 19144.137881 eV Total energy + Delta-G solvation = -3175.118313 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.69601 -37.77979 -36.44791 -34.15273 -32.47655 -31.92993 -30.41666 -29.47705 -28.43158 -25.26898 -24.51373 -23.41797 -23.27875 -20.70036 -20.14269 -19.62405 -18.35315 -17.03905 -16.46476 -15.77143 -15.15632 -14.92522 -14.61293 -14.51360 -14.15847 -13.83525 -13.76499 -13.26806 -13.05086 -12.73446 -12.53108 -12.11324 -12.05528 -11.86693 -11.80517 -11.69227 -11.43246 -11.30673 -10.94113 -10.85708 -10.76507 -10.68718 -10.19271 -10.11022 -9.89743 -9.81598 -9.71247 -9.24619 -9.09115 -8.59064 -8.43233 -6.81398 -5.76214 -3.12881 1.44320 3.41092 3.46178 3.46918 3.56903 3.63516 4.49446 4.60691 4.68050 4.98308 5.05777 5.24233 5.30614 5.35899 5.43173 5.45792 5.53691 5.60363 5.61933 5.64400 5.66764 5.70247 5.83202 5.92064 5.97936 6.10105 6.15318 6.25948 6.27237 6.42359 6.47524 6.49386 6.57430 6.64749 6.68301 6.80398 6.89213 7.11743 7.51363 7.62722 7.79404 7.94115 8.26930 8.64309 9.18482 9.79083 10.47250 11.36174 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020717 B = 0.003907 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.242733 B = 7165.260515 C = 8156.562097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.033 4.033 4 C -0.224 4.224 5 C 0.535 3.465 6 O -0.538 6.538 7 N -0.721 5.721 8 C 0.111 3.889 9 C 0.152 3.848 10 H 0.036 0.964 11 C -0.125 4.125 12 C -0.149 4.149 13 C 0.173 3.827 14 N -0.589 5.589 15 C -0.235 4.235 16 H 0.074 0.926 17 C 0.000 4.000 18 N -0.915 5.915 19 Si 0.910 3.090 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.284 1.284 23 C -0.099 4.099 24 C -0.132 4.132 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.122 0.878 31 H 0.394 0.606 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.027 0.973 39 H 0.069 0.931 40 H 0.254 0.746 41 H 0.055 0.945 42 H 0.102 0.898 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.811 -16.816 -2.431 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.034 4.034 4 C -0.245 4.245 5 C 0.324 3.676 6 O -0.418 6.418 7 N -0.371 5.371 8 C -0.014 4.014 9 C 0.043 3.957 10 H 0.054 0.946 11 C -0.163 4.163 12 C -0.188 4.188 13 C 0.048 3.952 14 N -0.313 5.313 15 C -0.363 4.363 16 H 0.092 0.908 17 C -0.198 4.198 18 N -0.561 5.561 19 Si 0.740 3.260 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.136 4.136 24 C -0.189 4.189 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.140 0.860 31 H 0.227 0.773 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.120 0.880 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.415 -16.181 -3.208 19.509 hybrid contribution 0.811 -0.078 0.167 0.832 sum -9.604 -16.260 -3.041 19.128 Atomic orbital electron populations 1.21724 0.94415 1.01827 1.02456 1.20739 0.96513 0.92926 1.03101 1.22510 0.90993 0.94571 0.95376 1.22461 1.06524 0.96951 0.98573 1.18549 0.79597 0.85405 0.84044 1.90734 1.53292 1.67643 1.30153 1.46067 1.61363 1.21685 1.07980 1.22176 0.97316 0.81656 1.00299 1.21128 0.91455 0.90741 0.92349 0.94635 1.22600 0.96609 0.97892 0.99218 1.23006 0.99933 0.96780 0.99039 1.21419 0.88782 0.90094 0.94857 1.44462 1.08123 1.02704 1.76025 1.18925 0.84393 0.93011 1.40010 0.90779 1.24935 0.98401 0.95777 1.00652 1.69931 1.34598 0.97688 1.53878 0.86233 0.84263 0.76783 0.78700 1.20932 1.21551 1.21062 1.20914 0.97698 1.02218 0.92767 1.21551 0.96533 0.99725 1.01104 0.92315 0.92375 0.92368 0.90526 0.90857 0.86033 0.77284 0.91586 0.91781 0.91860 0.92458 0.92367 0.92338 0.95521 0.91258 0.93548 0.92639 0.88013 0.92868 0.91379 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.10 -0.77 6.09 -27.88 -0.17 -0.94 16 3 C -0.03 -0.36 4.61 -101.17 -0.47 -0.83 16 4 C -0.22 -2.69 9.60 -37.81 -0.36 -3.05 16 5 C 0.54 8.49 7.64 -12.66 -0.10 8.39 16 6 O -0.54 -10.30 11.29 5.27 0.06 -10.24 16 7 N -0.72 -11.11 5.36 -61.49 -0.33 -11.44 16 8 C 0.11 2.18 5.10 -4.04 -0.02 2.16 16 9 C 0.15 3.03 3.19 -66.95 -0.21 2.81 16 10 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 11 C -0.13 -2.12 6.23 -24.90 -0.16 -2.27 16 12 C -0.15 -2.75 7.08 -24.59 -0.17 -2.93 16 13 C 0.17 4.16 5.39 -2.53 -0.01 4.15 16 14 N -0.59 -14.75 3.13 -162.57 -0.51 -15.26 16 15 C -0.24 -6.50 9.71 -15.06 -0.15 -6.64 16 16 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 17 C 0.00 -0.01 5.47 -17.43 -0.10 -0.10 16 18 N -0.92 -26.83 10.63 55.49 0.59 -26.24 16 19 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C -0.10 -1.23 5.34 -27.88 -0.15 -1.38 16 24 C -0.13 -1.70 9.38 37.16 0.35 -1.35 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.53 8.03 -51.93 -0.42 0.11 16 30 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.39 4.87 8.40 -40.82 -0.34 4.53 16 32 H 0.07 1.48 7.85 -51.93 -0.41 1.08 16 33 H 0.06 1.41 8.01 -51.93 -0.42 0.99 16 34 H 0.06 1.07 7.77 -51.93 -0.40 0.67 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.03 0.70 8.03 -51.93 -0.42 0.28 16 39 H 0.07 1.84 7.02 -51.93 -0.36 1.48 16 40 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 42 H 0.10 1.55 5.81 -51.93 -0.30 1.25 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 1.05 6.55 -51.93 -0.34 0.71 16 45 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 357.21 15.07 5.38 5.38 Total: -1.00 -31.03 357.21 -9.21 -40.24 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -8.03 Total: 2.99 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.35 Total: -2.65 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.25 Total: -52.94 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.06 Total: -10.24 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.03 -9.21 -40.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481034203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.502 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds