Wall clock time and date at job start Fri Apr 10 2020 17:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.46979 * 2 1 4 4 C 1.33000 * 119.99970 * 91.80171 * 3 2 1 5 5 C 1.47103 * 120.00112 * 351.76591 * 4 3 2 6 6 O 1.21615 * 119.99781 * 353.95574 * 5 4 3 7 7 N 1.34773 * 120.00126 * 173.95354 * 5 4 3 8 8 C 1.46507 * 119.99786 * 0.02562 * 7 5 4 9 9 C 1.46492 * 120.00203 * 179.97438 * 7 5 4 10 10 H 1.08999 * 110.64306 * 1.68969 * 9 7 5 11 11 C 1.55159 * 110.72078 * 125.02428 * 9 7 5 12 12 C 1.54915 * 101.58223 * 153.86450 * 11 9 7 13 13 N 1.47432 * 104.83238 * 322.99583 * 12 11 9 14 14 C 1.36933 * 125.64534 * 204.16850 * 13 12 11 15 15 H 1.08002 * 119.99928 * 170.01927 * 14 13 12 16 16 C 1.38810 * 120.00207 * 350.00796 * 14 13 12 17 17 N 1.31619 * 120.00358 * 158.99216 * 16 14 13 18 18 Si 1.86802 * 120.00199 * 339.00161 * 16 14 13 19 19 H 1.48498 * 109.47432 * 84.76796 * 18 16 14 20 20 H 1.48501 * 109.47123 * 204.76968 * 18 16 14 21 21 H 1.48498 * 109.46921 * 324.76533 * 18 16 14 22 22 C 1.47015 * 108.70222 * 24.12280 * 13 12 11 23 23 C 1.50699 * 119.99854 * 271.80133 * 3 2 1 24 24 C 1.52995 * 109.47088 * 275.00007 * 23 3 2 25 25 H 1.09004 * 109.46834 * 300.00007 * 1 2 3 26 26 H 1.08998 * 109.47222 * 59.99824 * 1 2 3 27 27 H 1.08994 * 109.46526 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47157 * 239.99960 * 2 1 3 29 29 H 1.09006 * 109.47167 * 119.99514 * 2 1 3 30 30 H 1.08003 * 119.99767 * 171.75896 * 4 3 2 31 31 H 1.08992 * 109.47154 * 269.99811 * 8 7 5 32 32 H 1.09002 * 109.46888 * 149.99673 * 8 7 5 33 33 H 1.09002 * 109.46920 * 30.00129 * 8 7 5 34 34 H 1.08993 * 111.00618 * 271.93751 * 11 9 7 35 35 H 1.09003 * 110.99964 * 35.79577 * 11 9 7 36 36 H 1.08996 * 110.37061 * 204.15497 * 12 11 9 37 37 H 1.09003 * 110.45381 * 81.87601 * 12 11 9 38 38 H 0.97001 * 120.00620 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.88436 * 239.52463 * 22 13 12 40 40 H 1.09003 * 110.01030 * 118.43462 * 22 13 12 41 41 H 1.08993 * 109.47132 * 35.00453 * 23 3 2 42 42 H 1.09011 * 109.46843 * 154.99987 * 23 3 2 43 43 H 1.09005 * 109.46714 * 180.02562 * 24 23 3 44 44 H 1.09002 * 109.47467 * 299.99912 * 24 23 3 45 45 H 1.08997 * 109.47286 * 60.00333 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2881 2.0357 1.1512 5 6 1.9124 1.4005 2.4237 6 8 1.2710 0.3673 2.4215 7 7 2.2791 1.9635 3.5921 8 6 3.0514 3.2085 3.5947 9 6 1.9044 1.3313 4.8593 10 1 1.3609 0.4036 4.6800 11 6 3.1580 1.0765 5.7374 12 6 2.5473 1.0843 7.1611 13 7 1.5026 2.1237 7.1179 14 6 1.0190 2.8144 8.1969 15 1 0.3721 3.6661 8.0470 16 6 1.3601 2.4197 9.4832 17 7 1.2632 3.2728 10.4808 18 14 1.9569 0.6779 9.7986 19 1 3.4162 0.5993 9.5354 20 1 1.6884 0.3110 11.2123 21 1 1.2403 -0.2613 8.8989 22 6 1.0668 2.2964 5.7245 23 6 2.2448 2.1449 -1.3045 24 6 3.6327 1.8092 -1.8539 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 2.7718 3.0014 1.1518 31 1 4.1160 2.9756 3.5824 32 1 2.8149 3.7808 4.4918 33 1 2.7975 3.7954 2.7120 34 1 3.6047 0.1088 5.5093 35 1 3.8865 1.8788 5.6204 36 1 3.3076 1.3411 7.8986 37 1 2.1078 0.1140 7.3924 38 1 1.5019 2.9972 11.3797 39 1 1.2401 3.3246 5.4066 40 1 0.0082 2.0534 5.6319 41 1 1.4851 1.8330 -2.0211 42 1 2.1694 3.2199 -1.1398 43 1 3.7865 2.3333 -2.7972 44 1 4.3925 2.1212 -1.1373 45 1 3.7081 0.7344 -2.0186 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481720013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:05 Heat of formation + Delta-G solvation = 12.575551 kcal Electronic energy + Delta-G solvation = -22689.575688 eV Core-core repulsion = 19515.598369 eV Total energy + Delta-G solvation = -3173.977320 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.17947 -38.06775 -36.45517 -34.91499 -32.28262 -32.05156 -30.42798 -29.44488 -28.15269 -26.73952 -25.03705 -23.87370 -23.42856 -21.36859 -20.75984 -19.15405 -18.04693 -17.43164 -16.95193 -15.94598 -15.46858 -15.15276 -14.96882 -14.52056 -14.25757 -13.86769 -13.50399 -13.43793 -13.18572 -12.96499 -12.84808 -12.77287 -12.34207 -12.24097 -11.94535 -11.88164 -11.80084 -11.50642 -11.39180 -11.18452 -11.04179 -10.95696 -10.73145 -10.66898 -10.01324 -9.83720 -9.39385 -9.32486 -9.19058 -8.79208 -8.33954 -7.07969 -5.91090 -3.20236 1.29905 3.13777 3.33501 3.33670 3.48834 3.50748 4.41980 4.54487 4.55083 4.84463 4.92595 4.98316 5.01621 5.15574 5.20370 5.22444 5.31222 5.36301 5.42065 5.47863 5.53870 5.56735 5.58333 5.61021 5.63488 5.77751 5.82860 5.87353 5.93532 5.97638 6.12704 6.24161 6.30094 6.35529 6.46367 6.49685 6.52297 6.60545 6.75278 6.88511 7.58592 7.64845 8.31235 8.34810 8.83014 9.70061 10.15497 11.24776 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034848 B = 0.003696 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.293011 B = 7573.152512 C = 7785.489981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 C -0.028 4.028 4 C -0.227 4.227 5 C 0.544 3.456 6 O -0.539 6.539 7 N -0.599 5.599 8 C 0.074 3.926 9 C 0.127 3.873 10 H 0.107 0.893 11 C -0.137 4.137 12 C 0.099 3.901 13 N -0.609 5.609 14 C -0.239 4.239 15 H 0.096 0.904 16 C 0.016 3.984 17 N -0.913 5.913 18 Si 0.888 3.112 19 H -0.287 1.287 20 H -0.304 1.304 21 H -0.274 1.274 22 C 0.131 3.869 23 C -0.096 4.096 24 C -0.147 4.147 25 H 0.065 0.935 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.035 0.965 38 H 0.263 0.737 39 H 0.038 0.962 40 H 0.034 0.966 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.279 -2.461 -24.012 24.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.139 4.139 3 C -0.030 4.030 4 C -0.248 4.248 5 C 0.335 3.665 6 O -0.419 6.419 7 N -0.331 5.331 8 C -0.069 4.069 9 C 0.023 3.977 10 H 0.125 0.875 11 C -0.176 4.176 12 C -0.026 4.026 13 N -0.336 5.336 14 C -0.365 4.365 15 H 0.113 0.887 16 C -0.182 4.182 17 N -0.558 5.558 18 Si 0.719 3.281 19 H -0.214 1.214 20 H -0.233 1.233 21 H -0.199 1.199 22 C 0.004 3.996 23 C -0.134 4.134 24 C -0.204 4.204 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.120 0.880 30 H 0.145 0.855 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.909 -2.896 -23.742 24.416 hybrid contribution 0.411 -0.737 0.426 0.946 sum 5.319 -3.633 -23.316 24.189 Atomic orbital electron populations 1.21531 0.94238 1.01619 1.01471 1.20965 0.97116 0.92547 1.03304 1.22545 0.90601 0.95774 0.94064 1.22508 1.07739 1.02531 0.91994 1.18554 0.79606 0.84196 0.84104 1.90706 1.40357 1.23785 1.87087 1.47706 1.54304 1.25325 1.05724 1.21844 0.95410 0.86074 1.03600 1.22165 0.96322 0.97320 0.81853 0.87492 1.23069 0.97035 1.01463 0.96066 1.22131 0.92195 0.93062 0.95210 1.44737 1.42079 1.44117 1.02710 1.18673 1.27431 1.07604 0.82840 0.88678 1.24812 0.99948 0.98152 0.95251 1.69822 1.52093 1.33520 1.00342 0.87052 0.78161 0.87098 0.75778 1.21413 1.23272 1.19937 1.21558 0.96242 0.96803 0.84968 1.20749 0.98423 0.99928 0.94253 1.21722 0.95840 1.01979 1.00884 0.91566 0.93945 0.92822 0.92457 0.87996 0.85508 0.92717 0.89925 0.91133 0.91367 0.90812 0.91658 0.94786 0.92750 0.94421 0.94807 0.90420 0.90751 0.92222 0.92369 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 9.43 37.16 0.35 -1.13 16 2 C -0.10 -1.13 5.33 -27.88 -0.15 -1.28 16 3 C -0.03 -0.28 4.61 -101.16 -0.47 -0.75 16 4 C -0.23 -2.52 8.82 -37.80 -0.33 -2.86 16 5 C 0.54 7.90 7.47 -12.67 -0.09 7.81 16 6 O -0.54 -9.15 10.95 5.26 0.06 -9.09 16 7 N -0.60 -8.73 2.88 -173.23 -0.50 -9.23 16 8 C 0.07 0.85 8.82 59.85 0.53 1.38 16 9 C 0.13 2.22 3.36 -66.10 -0.22 1.99 16 10 H 0.11 2.00 6.99 -51.93 -0.36 1.63 16 11 C -0.14 -2.38 6.63 -24.58 -0.16 -2.54 16 12 C 0.10 2.19 4.65 -2.52 -0.01 2.18 16 13 N -0.61 -14.92 3.31 -170.07 -0.56 -15.48 16 14 C -0.24 -6.84 10.63 -15.06 -0.16 -7.00 16 15 H 0.10 2.87 8.06 -52.49 -0.42 2.45 16 16 C 0.02 0.47 5.47 -17.43 -0.10 0.37 16 17 N -0.91 -28.41 13.97 55.49 0.78 -27.64 16 18 Si 0.89 22.90 24.24 -169.99 -4.12 18.78 16 19 H -0.29 -7.06 6.27 56.52 0.35 -6.71 16 20 H -0.30 -7.97 7.11 56.52 0.40 -7.56 16 21 H -0.27 -6.95 6.11 56.52 0.35 -6.60 16 22 C 0.13 2.67 6.79 -3.07 -0.02 2.64 16 23 C -0.10 -0.70 6.10 -27.89 -0.17 -0.87 16 24 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 25 H 0.07 0.90 6.79 -51.93 -0.35 0.55 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.10 1.39 5.66 -51.93 -0.29 1.10 16 30 H 0.13 1.13 6.17 -52.48 -0.32 0.80 16 31 H 0.05 0.56 8.07 -51.93 -0.42 0.14 16 32 H 0.08 1.07 6.43 -51.93 -0.33 0.74 16 33 H 0.07 0.64 6.03 -51.93 -0.31 0.33 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.20 7.10 -51.93 -0.37 0.83 16 36 H 0.07 1.53 5.48 -51.93 -0.28 1.25 16 37 H 0.03 0.79 5.68 -51.93 -0.29 0.49 16 38 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 39 H 0.04 0.74 6.29 -51.93 -0.33 0.42 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.49 8.04 -51.92 -0.42 0.07 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 341.19 15.07 5.14 5.14 Total: -1.00 -32.32 341.19 -7.41 -39.72 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.56 Total: -1.60 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -0.64 Total: -0.60 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.29 Total: -52.35 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.06 Total: -9.09 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.12 Total: 18.78 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.32 -7.41 -39.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481720013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.296 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds