Wall clock time and date at job start Fri Apr 10 2020 17:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.46979 * 2 1 4 4 C 1.33000 * 119.99970 * 91.80171 * 3 2 1 5 5 C 1.47103 * 120.00112 * 351.76591 * 4 3 2 6 6 O 1.21615 * 119.99781 * 353.95574 * 5 4 3 7 7 N 1.34773 * 120.00126 * 173.95354 * 5 4 3 8 8 C 1.46507 * 119.99786 * 0.02562 * 7 5 4 9 9 C 1.46492 * 120.00203 * 179.97438 * 7 5 4 10 10 H 1.08999 * 110.64306 * 1.68969 * 9 7 5 11 11 C 1.55159 * 110.72078 * 125.02428 * 9 7 5 12 12 C 1.54915 * 101.58223 * 153.86450 * 11 9 7 13 13 N 1.47432 * 104.83238 * 322.99583 * 12 11 9 14 14 C 1.36933 * 125.64534 * 204.16850 * 13 12 11 15 15 H 1.08002 * 119.99928 * 170.01927 * 14 13 12 16 16 C 1.38810 * 120.00207 * 350.00796 * 14 13 12 17 17 N 1.31619 * 120.00358 * 158.99216 * 16 14 13 18 18 Si 1.86802 * 120.00199 * 339.00161 * 16 14 13 19 19 H 1.48498 * 109.47432 * 84.76796 * 18 16 14 20 20 H 1.48501 * 109.47123 * 204.76968 * 18 16 14 21 21 H 1.48498 * 109.46921 * 324.76533 * 18 16 14 22 22 C 1.47015 * 108.70222 * 24.12280 * 13 12 11 23 23 C 1.50699 * 119.99854 * 271.80133 * 3 2 1 24 24 C 1.52995 * 109.47088 * 275.00007 * 23 3 2 25 25 H 1.09004 * 109.46834 * 300.00007 * 1 2 3 26 26 H 1.08998 * 109.47222 * 59.99824 * 1 2 3 27 27 H 1.08994 * 109.46526 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47157 * 239.99960 * 2 1 3 29 29 H 1.09006 * 109.47167 * 119.99514 * 2 1 3 30 30 H 1.08003 * 119.99767 * 171.75896 * 4 3 2 31 31 H 1.08992 * 109.47154 * 269.99811 * 8 7 5 32 32 H 1.09002 * 109.46888 * 149.99673 * 8 7 5 33 33 H 1.09002 * 109.46920 * 30.00129 * 8 7 5 34 34 H 1.08993 * 111.00618 * 271.93751 * 11 9 7 35 35 H 1.09003 * 110.99964 * 35.79577 * 11 9 7 36 36 H 1.08996 * 110.37061 * 204.15497 * 12 11 9 37 37 H 1.09003 * 110.45381 * 81.87601 * 12 11 9 38 38 H 0.97001 * 120.00620 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.88436 * 239.52463 * 22 13 12 40 40 H 1.09003 * 110.01030 * 118.43462 * 22 13 12 41 41 H 1.08993 * 109.47132 * 35.00453 * 23 3 2 42 42 H 1.09011 * 109.46843 * 154.99987 * 23 3 2 43 43 H 1.09005 * 109.46714 * 180.02562 * 24 23 3 44 44 H 1.09002 * 109.47467 * 299.99912 * 24 23 3 45 45 H 1.08997 * 109.47286 * 60.00333 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2881 2.0357 1.1512 5 6 1.9124 1.4005 2.4237 6 8 1.2710 0.3673 2.4215 7 7 2.2791 1.9635 3.5921 8 6 3.0514 3.2085 3.5947 9 6 1.9044 1.3313 4.8593 10 1 1.3609 0.4036 4.6800 11 6 3.1580 1.0765 5.7374 12 6 2.5473 1.0843 7.1611 13 7 1.5026 2.1237 7.1179 14 6 1.0190 2.8144 8.1969 15 1 0.3721 3.6661 8.0470 16 6 1.3601 2.4197 9.4832 17 7 1.2632 3.2728 10.4808 18 14 1.9569 0.6779 9.7986 19 1 3.4162 0.5993 9.5354 20 1 1.6884 0.3110 11.2123 21 1 1.2403 -0.2613 8.8989 22 6 1.0668 2.2964 5.7245 23 6 2.2448 2.1449 -1.3045 24 6 3.6327 1.8092 -1.8539 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 2.7718 3.0014 1.1518 31 1 4.1160 2.9756 3.5824 32 1 2.8149 3.7808 4.4918 33 1 2.7975 3.7954 2.7120 34 1 3.6047 0.1088 5.5093 35 1 3.8865 1.8788 5.6204 36 1 3.3076 1.3411 7.8986 37 1 2.1078 0.1140 7.3924 38 1 1.5019 2.9972 11.3797 39 1 1.2401 3.3246 5.4066 40 1 0.0082 2.0534 5.6319 41 1 1.4851 1.8330 -2.0211 42 1 2.1694 3.2199 -1.1398 43 1 3.7865 2.3333 -2.7972 44 1 4.3925 2.1212 -1.1373 45 1 3.7081 0.7344 -2.0186 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481720013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:04 Heat of formation + Delta-G solvation = -7.502808 kcal Electronic energy + Delta-G solvation = -22690.446351 eV Core-core repulsion = 19515.598369 eV Total energy + Delta-G solvation = -3174.847983 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.32823 -39.48916 -37.43711 -36.22640 -34.29898 -32.75390 -31.83716 -30.80508 -29.64170 -27.82492 -26.43906 -25.19530 -24.17553 -22.88353 -22.28673 -20.42243 -19.06065 -18.87458 -18.51119 -17.34297 -17.00558 -16.50419 -15.88133 -15.75766 -15.40161 -15.35757 -14.81024 -14.60571 -14.34361 -14.32819 -13.92004 -13.80579 -13.69515 -13.42667 -13.14441 -13.09985 -13.00672 -12.78492 -12.59111 -12.49123 -12.41932 -12.11615 -12.06607 -11.73694 -11.56317 -11.52347 -11.37579 -10.91430 -10.43969 -10.05466 -9.50830 -9.15263 -8.17958 -5.44179 0.43024 1.26946 1.38507 1.45440 1.99832 2.30913 2.38564 3.02817 3.30743 3.57250 3.72331 3.79727 3.82292 4.06911 4.12609 4.27603 4.35071 4.36119 4.42630 4.45152 4.48040 4.61428 4.66370 4.69706 4.73207 4.81211 4.82549 4.88269 4.97610 4.98257 5.02581 5.05942 5.13647 5.15237 5.25402 5.38411 5.43054 5.54559 5.58600 5.61502 5.74065 6.06746 6.50802 6.69653 7.25189 7.49958 8.02990 9.01172 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034848 B = 0.003696 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.293011 B = 7573.152512 C = 7785.489981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 C -0.016 4.016 4 C -0.239 4.239 5 C 0.536 3.464 6 O -0.571 6.571 7 N -0.601 5.601 8 C 0.071 3.929 9 C 0.142 3.858 10 H 0.093 0.907 11 C -0.120 4.120 12 C 0.092 3.908 13 N -0.625 5.625 14 C -0.234 4.234 15 H 0.064 0.936 16 C -0.041 4.041 17 N -0.958 5.958 18 Si 0.949 3.051 19 H -0.265 1.265 20 H -0.310 1.310 21 H -0.269 1.269 22 C 0.130 3.870 23 C -0.093 4.093 24 C -0.145 4.145 25 H 0.036 0.964 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.154 0.846 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.030 0.970 38 H 0.263 0.737 39 H 0.046 0.954 40 H 0.019 0.981 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.067 -2.930 -27.105 28.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.142 4.142 3 C -0.018 4.018 4 C -0.260 4.260 5 C 0.330 3.670 6 O -0.453 6.453 7 N -0.332 5.332 8 C -0.071 4.071 9 C 0.036 3.964 10 H 0.111 0.889 11 C -0.159 4.159 12 C -0.033 4.033 13 N -0.353 5.353 14 C -0.362 4.362 15 H 0.082 0.918 16 C -0.235 4.235 17 N -0.606 5.606 18 Si 0.779 3.221 19 H -0.191 1.191 20 H -0.239 1.239 21 H -0.194 1.194 22 C 0.004 3.996 23 C -0.130 4.130 24 C -0.203 4.203 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.171 0.829 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.723 -3.363 -26.890 27.921 hybrid contribution -0.228 -0.550 1.273 1.405 sum 6.495 -3.913 -25.617 26.716 Atomic orbital electron populations 1.21476 0.94534 1.01524 1.00956 1.20930 0.96848 0.93499 1.02908 1.22821 0.88600 0.95098 0.95256 1.22523 1.09398 1.03709 0.90320 1.19190 0.78954 0.83879 0.85002 1.90706 1.41746 1.25325 1.87557 1.47736 1.54691 1.26232 1.04579 1.22039 0.96091 0.84838 1.04149 1.21746 0.95705 0.95977 0.82923 0.88895 1.22979 0.96900 1.03494 0.92512 1.22223 0.91299 0.91729 0.98032 1.44808 1.42967 1.44329 1.03166 1.18617 1.26235 1.06921 0.84407 0.91794 1.25469 1.01291 1.01667 0.95054 1.69944 1.54524 1.35345 1.00778 0.86040 0.78947 0.82087 0.75063 1.19108 1.23895 1.19441 1.21658 0.96082 0.98187 0.83664 1.20814 0.99301 1.00298 0.92627 1.21720 0.95006 1.02019 1.01530 0.94436 0.91907 0.92837 0.90415 0.90786 0.82852 0.90784 0.91616 0.88274 0.88867 0.89239 0.92855 0.95270 0.92824 0.93635 0.96254 0.89441 0.89455 0.90714 0.92515 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.43 71.98 0.68 -2.06 16 2 C -0.10 -2.15 5.33 29.85 0.16 -1.99 16 3 C -0.02 -0.28 4.61 -17.61 -0.08 -0.36 16 4 C -0.24 -4.67 8.82 23.43 0.21 -4.46 16 5 C 0.54 14.83 7.47 86.57 0.65 15.47 16 6 O -0.57 -19.31 10.95 -4.08 -0.04 -19.35 16 7 N -0.60 -16.45 2.88 -820.22 -2.36 -18.82 16 8 C 0.07 1.43 8.82 127.77 1.13 2.56 16 9 C 0.14 4.79 3.36 46.18 0.16 4.95 16 10 H 0.09 3.44 6.99 -2.39 -0.02 3.43 16 11 C -0.12 -3.89 6.63 31.99 0.21 -3.68 16 12 C 0.09 3.94 4.65 86.86 0.40 4.34 16 13 N -0.63 -30.82 3.31 -691.96 -2.29 -33.11 16 14 C -0.23 -13.74 10.63 84.03 0.89 -12.85 16 15 H 0.06 4.06 8.06 -2.91 -0.02 4.03 16 16 C -0.04 -2.46 5.47 84.86 0.46 -1.99 16 17 N -0.96 -61.33 13.97 21.65 0.30 -61.03 16 18 Si 0.95 47.77 24.24 68.60 1.66 49.44 16 19 H -0.27 -12.32 6.27 99.48 0.62 -11.70 16 20 H -0.31 -15.78 7.11 99.48 0.71 -15.07 16 21 H -0.27 -13.18 6.11 99.48 0.61 -12.57 16 22 C 0.13 5.32 6.79 86.73 0.59 5.91 16 23 C -0.09 -1.00 6.10 29.85 0.18 -0.82 16 24 C -0.15 -1.31 9.89 71.98 0.71 -0.60 16 25 H 0.04 1.01 6.79 -2.38 -0.02 1.00 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.08 1.25 8.13 -2.39 -0.02 1.23 16 29 H 0.07 1.98 5.66 -2.38 -0.01 1.97 16 30 H 0.15 2.10 6.17 -2.91 -0.02 2.08 16 31 H 0.07 1.24 8.07 -2.39 -0.02 1.22 16 32 H 0.07 1.58 6.43 -2.39 -0.02 1.56 16 33 H 0.10 1.44 6.03 -2.39 -0.01 1.42 16 34 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.09 2.64 7.10 -2.39 -0.02 2.62 16 36 H 0.05 2.42 5.48 -2.39 -0.01 2.40 16 37 H 0.03 1.30 5.68 -2.39 -0.01 1.29 16 38 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 39 H 0.05 1.80 6.29 -2.38 -0.01 1.78 16 40 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.09 0.76 8.04 -2.38 -0.02 0.74 16 43 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 44 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -72.37 341.19 4.39 -67.98 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.78 Total: 10.45 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 6.35 Total: 4.43 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -4.35 Total: -112.95 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.04 Total: -19.35 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 1.66 Total: 49.44 kcal Total: -72.37 4.39 -67.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481720013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.476 kcal (2) G-P(sol) polarization free energy of solvation -72.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds