Wall clock time and date at job start Fri Apr 10 2020 17:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50709 * 109.47048 * 2 1 4 4 C 1.50697 * 119.99584 * 272.42021 * 3 2 1 5 5 C 1.32993 * 120.00055 * 92.41946 * 3 2 1 6 6 C 1.47098 * 119.99972 * 352.58270 * 5 3 2 7 7 O 1.21610 * 120.00312 * 353.64594 * 6 5 3 8 8 N 1.34776 * 119.99830 * 173.64481 * 6 5 3 9 9 C 1.46501 * 120.00004 * 174.86550 * 8 6 5 10 10 C 1.53001 * 109.46931 * 302.05484 * 9 8 6 11 11 C 1.53000 * 109.47508 * 62.05688 * 9 8 6 12 12 N 1.46507 * 109.47043 * 59.99841 * 11 9 8 13 13 C 1.36928 * 119.99884 * 180.02562 * 12 11 9 14 14 H 1.08002 * 120.00572 * 359.97438 * 13 12 11 15 15 C 1.38816 * 120.00049 * 180.02562 * 13 12 11 16 16 N 1.31617 * 119.99653 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00189 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47324 * 89.99745 * 17 15 13 19 19 H 1.48498 * 109.47211 * 209.99722 * 17 15 13 20 20 H 1.48505 * 109.47373 * 329.99767 * 17 15 13 21 21 C 1.53001 * 109.46958 * 182.05968 * 9 8 6 22 22 C 1.52995 * 117.49962 * 131.60737 * 21 9 8 23 23 C 1.52993 * 60.00148 * 252.50793 * 22 21 9 24 24 H 1.09005 * 109.47046 * 60.00700 * 1 2 3 25 25 H 1.09006 * 109.46996 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47600 * 300.00635 * 1 2 3 27 27 H 1.08997 * 109.47593 * 239.99921 * 2 1 3 28 28 H 1.09005 * 109.47046 * 119.99300 * 2 1 3 29 29 H 1.09001 * 109.47470 * 269.99599 * 4 3 2 30 30 H 1.09002 * 109.47401 * 30.00086 * 4 3 2 31 31 H 1.09003 * 109.46978 * 149.99994 * 4 3 2 32 32 H 1.07998 * 119.99716 * 172.30948 * 5 3 2 33 33 H 0.97003 * 119.99773 * 354.85695 * 8 6 5 34 34 H 1.09003 * 109.46935 * 60.00328 * 10 9 8 35 35 H 1.08998 * 109.47091 * 180.02562 * 10 9 8 36 36 H 1.08999 * 109.47340 * 300.00201 * 10 9 8 37 37 H 1.08998 * 109.47423 * 180.02562 * 11 9 8 38 38 H 1.09003 * 109.46677 * 300.00432 * 11 9 8 39 39 H 0.97000 * 119.99715 * 0.02562 * 12 11 9 40 40 H 0.97007 * 119.99978 * 180.02562 * 16 15 13 41 41 H 1.09006 * 115.54568 * 277.31078 * 21 9 8 42 42 H 1.09007 * 117.49633 * 359.97438 * 22 21 9 43 43 H 1.09001 * 117.50504 * 145.01281 * 22 21 9 44 44 H 1.09001 * 117.49843 * 252.51003 * 23 22 21 45 45 H 1.08998 * 117.50109 * 107.48469 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2315 2.1496 -1.3040 5 6 2.2998 2.0316 1.1507 6 6 1.9533 1.3838 2.4251 7 8 1.3198 0.3458 2.4271 8 7 2.3380 1.9408 3.5906 9 6 1.8983 1.3586 4.8610 10 6 0.3692 1.3307 4.9071 11 6 2.4382 -0.0678 4.9824 12 7 3.9024 -0.0412 4.9383 13 6 4.6114 -1.2090 5.0296 14 1 4.0915 -2.1498 5.1345 15 6 5.9988 -1.1837 4.9883 16 7 6.6325 -0.0372 4.8608 17 14 6.9661 -2.7767 5.1135 18 1 7.1834 -3.3322 3.7535 19 1 8.2787 -2.5097 5.7546 20 1 6.2053 -3.7549 5.9319 21 6 2.4281 2.2049 6.0203 22 6 1.4352 2.6075 7.1125 23 6 1.9431 3.6527 6.1174 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.2476 1.9831 -1.6618 30 1 1.5209 1.7760 -2.0412 31 1 2.0701 3.2168 -1.1521 32 1 2.7754 3.0013 1.1496 33 1 2.9061 2.7270 3.5882 34 1 -0.0083 0.7278 4.0811 35 1 0.0420 0.8980 5.8525 36 1 -0.0155 2.3469 4.8206 37 1 2.1107 -0.5012 5.9274 38 1 2.0608 -0.6707 4.1564 39 1 4.3694 0.8038 4.8444 40 1 7.6020 -0.0195 4.8316 41 1 3.4539 1.9961 6.3243 42 1 0.4043 2.2698 7.0048 43 1 1.8074 2.6636 8.1354 44 1 2.6498 4.3965 6.4856 45 1 1.2467 4.0023 5.3553 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481928371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:11 Heat of formation + Delta-G solvation = -4.678100 kcal Electronic energy + Delta-G solvation = -23250.785465 eV Core-core repulsion = 20076.059971 eV Total energy + Delta-G solvation = -3174.725494 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.37082 -39.33955 -36.84690 -36.24972 -34.85005 -33.13441 -31.85885 -31.05067 -28.63762 -27.56037 -25.31094 -24.48825 -24.03163 -23.13942 -21.96245 -20.17196 -19.41301 -19.17560 -17.93047 -17.00292 -16.78841 -16.22387 -15.98570 -15.77715 -15.28195 -15.22200 -14.90897 -14.51022 -14.18004 -13.76262 -13.70862 -13.66017 -13.54270 -13.19291 -13.10074 -12.97839 -12.81472 -12.78352 -12.43458 -12.23231 -12.06953 -12.02203 -11.85933 -11.76360 -11.60786 -11.20849 -11.04165 -10.90928 -10.16273 -9.96286 -9.64988 -8.92393 -7.95268 -5.20809 0.55602 1.42687 1.44529 1.52937 2.31700 2.53018 2.56256 3.08607 3.37331 3.65142 3.87240 3.90960 3.97189 3.99081 4.19025 4.25930 4.29599 4.48639 4.52201 4.57479 4.68704 4.70236 4.75768 4.79253 4.86797 4.89101 4.93333 4.99665 5.02936 5.05148 5.10190 5.16817 5.26821 5.32456 5.39769 5.43123 5.44920 5.49106 5.60167 5.80974 5.85995 6.27495 6.86284 7.34380 7.55426 8.10953 8.38826 9.27925 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.011161 B = 0.006654 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.130669 B = 4206.671065 C = 5792.666637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.109 4.109 3 C -0.030 4.030 4 C -0.120 4.120 5 C -0.245 4.245 6 C 0.537 3.463 7 O -0.558 6.558 8 N -0.705 5.705 9 C 0.213 3.787 10 C -0.150 4.150 11 C 0.146 3.854 12 N -0.727 5.727 13 C -0.242 4.242 14 H 0.062 0.938 15 C -0.071 4.071 16 N -0.964 5.964 17 Si 0.968 3.032 18 H -0.290 1.290 19 H -0.290 1.290 20 H -0.274 1.274 21 C -0.177 4.177 22 C -0.164 4.164 23 C -0.155 4.155 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.145 0.855 33 H 0.403 0.597 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.012 0.988 38 H 0.023 0.977 39 H 0.376 0.624 40 H 0.251 0.749 41 H 0.083 0.917 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.172 10.446 -6.924 18.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.146 4.146 3 C -0.032 4.032 4 C -0.176 4.176 5 C -0.265 4.265 6 C 0.329 3.671 7 O -0.440 6.440 8 N -0.355 5.355 9 C 0.127 3.873 10 C -0.208 4.208 11 C 0.018 3.982 12 N -0.370 5.370 13 C -0.374 4.374 14 H 0.080 0.920 15 C -0.263 4.263 16 N -0.616 5.616 17 Si 0.798 3.202 18 H -0.218 1.218 19 H -0.216 1.216 20 H -0.199 1.199 21 C -0.196 4.196 22 C -0.201 4.201 23 C -0.191 4.191 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.163 0.837 33 H 0.238 0.762 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.030 0.970 38 H 0.041 0.959 39 H 0.209 0.791 40 H 0.059 0.941 41 H 0.102 0.898 42 H 0.130 0.870 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.630 9.546 -6.867 18.002 hybrid contribution 1.574 -0.559 0.318 1.701 sum -12.055 8.987 -6.549 16.401 Atomic orbital electron populations 1.21408 0.93551 1.01387 1.01237 1.20959 0.97696 0.93566 1.02427 1.22786 0.89719 0.94988 0.95704 1.21017 1.03392 1.00423 0.92807 1.22536 1.09129 1.03455 0.91411 1.18934 0.79242 0.83874 0.85092 1.90634 1.42347 1.23456 1.87571 1.45848 1.52494 1.32366 1.04797 1.19760 0.94267 0.91026 0.82251 1.22147 0.93071 1.02794 1.02803 1.21121 0.84156 0.95780 0.97137 1.42283 1.00797 1.05757 1.88199 1.19548 0.89571 0.87821 1.40445 0.91991 1.25425 0.97190 0.99835 1.03886 1.69792 1.07256 1.25234 1.59277 0.85215 0.78050 0.79589 0.77388 1.21771 1.21622 1.19880 1.22271 0.99550 0.98448 0.99300 1.23172 0.99331 1.02658 0.94931 1.22998 1.03364 0.90506 1.02277 0.91642 0.93114 0.93776 0.91207 0.91514 0.89897 0.89702 0.89658 0.83747 0.76173 0.92355 0.90783 0.90677 0.96985 0.95921 0.79083 0.94057 0.89829 0.86967 0.88362 0.87885 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.07 9.45 71.98 0.68 -2.39 16 2 C -0.11 -3.18 5.31 29.85 0.16 -3.02 16 3 C -0.03 -0.77 5.36 -17.61 -0.09 -0.86 16 4 C -0.12 -2.01 10.04 71.23 0.72 -1.30 16 5 C -0.24 -6.88 9.62 23.43 0.23 -6.65 16 6 C 0.54 18.75 7.01 86.57 0.61 19.35 16 7 O -0.56 -22.32 7.91 -4.06 -0.03 -22.35 16 8 N -0.71 -23.09 4.71 -426.48 -2.01 -25.10 16 9 C 0.21 7.27 0.54 3.60 0.00 7.27 16 10 C -0.15 -4.35 7.00 71.98 0.50 -3.85 16 11 C 0.15 6.62 5.00 86.38 0.43 7.05 16 12 N -0.73 -38.98 5.03 -343.44 -1.73 -40.71 16 13 C -0.24 -14.41 9.99 84.04 0.84 -13.57 16 14 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 15 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 16 N -0.96 -59.94 13.06 21.65 0.28 -59.65 16 17 Si 0.97 48.25 29.55 68.60 2.03 50.27 16 18 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 19 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 20 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 21 C -0.18 -5.48 4.86 -10.80 -0.05 -5.53 16 22 C -0.16 -3.91 9.61 30.59 0.29 -3.61 16 23 C -0.15 -3.45 9.75 30.59 0.30 -3.15 16 24 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.04 1.30 6.92 -2.39 -0.02 1.29 16 27 H 0.07 1.78 8.13 -2.39 -0.02 1.76 16 28 H 0.07 2.57 5.56 -2.38 -0.01 2.56 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 31 H 0.08 1.16 8.07 -2.39 -0.02 1.14 16 32 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 33 H 0.40 11.76 8.40 -92.71 -0.78 10.98 16 34 H 0.06 1.95 6.19 -2.39 -0.01 1.94 16 35 H 0.07 1.97 6.83 -2.39 -0.02 1.95 16 36 H 0.07 1.81 7.01 -2.39 -0.02 1.79 16 37 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.02 1.16 6.14 -2.39 -0.01 1.14 16 39 H 0.38 20.77 6.63 -92.71 -0.62 20.15 16 40 H 0.25 15.06 8.31 -92.70 -0.77 14.29 16 41 H 0.08 3.27 7.09 -2.38 -0.02 3.25 16 42 H 0.11 2.38 5.87 -2.38 -0.01 2.37 16 43 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.11 2.09 7.42 -2.39 -0.02 2.07 16 Total: -1.00 -70.92 352.08 3.21 -67.71 By element: Atomic # 1 Polarization: 44.28 SS G_CDS: -0.41 Total: 43.88 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 5.08 Total: -14.04 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -3.45 Total: -125.47 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.03 Total: -22.35 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.27 kcal Total: -70.92 3.21 -67.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481928371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.027 kcal (2) G-P(sol) polarization free energy of solvation -70.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds