Wall clock time and date at job start Fri Apr 10 2020 17:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47294 * 2 1 4 4 C 1.32997 * 119.99944 * 234.03899 * 3 2 1 5 5 C 1.50702 * 120.00044 * 353.98039 * 4 3 2 6 6 C 1.47104 * 119.99966 * 173.98449 * 4 3 2 7 7 O 1.21613 * 119.99728 * 359.97438 * 6 4 3 8 8 N 1.34771 * 120.00033 * 180.02562 * 6 4 3 9 9 C 1.46499 * 120.00047 * 180.02562 * 8 6 4 10 10 H 1.08991 * 109.47220 * 34.99499 * 9 8 6 11 11 C 1.52995 * 109.47340 * 155.00056 * 9 8 6 12 12 C 1.53005 * 109.47253 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47159 * 299.99544 * 12 11 9 14 14 H 1.08999 * 109.47074 * 300.00707 * 13 12 11 15 15 N 1.46497 * 109.47442 * 179.97438 * 13 12 11 16 16 C 1.36942 * 119.99952 * 154.99914 * 15 13 12 17 17 H 1.07999 * 119.99826 * 0.02562 * 16 15 13 18 18 C 1.38805 * 119.99560 * 180.02562 * 16 15 13 19 19 N 1.31622 * 119.99835 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 120.00544 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47013 * 89.99753 * 20 18 16 22 22 H 1.48499 * 109.47068 * 209.99688 * 20 18 16 23 23 H 1.48499 * 109.46889 * 329.99793 * 20 18 16 24 24 C 1.53008 * 109.46842 * 60.00090 * 13 12 11 25 25 C 1.53005 * 109.47170 * 299.99903 * 24 13 12 26 26 H 1.08997 * 109.47503 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47037 * 59.99457 * 1 2 3 28 28 H 1.09002 * 109.46799 * 299.99834 * 1 2 3 29 29 H 1.08998 * 109.47425 * 120.00856 * 2 1 3 30 30 H 1.09002 * 109.46799 * 240.00165 * 2 1 3 31 31 H 1.07997 * 119.99905 * 54.04833 * 3 2 1 32 32 H 1.09003 * 109.46517 * 85.14668 * 5 4 3 33 33 H 1.08993 * 109.47079 * 205.14552 * 5 4 3 34 34 H 1.09001 * 109.47334 * 325.14776 * 5 4 3 35 35 H 0.97001 * 119.99994 * 359.97438 * 8 6 4 36 36 H 1.09006 * 109.47337 * 299.99814 * 11 9 8 37 37 H 1.09005 * 109.47364 * 59.99771 * 11 9 8 38 38 H 1.08997 * 109.47203 * 59.99972 * 12 11 9 39 39 H 1.08999 * 109.46992 * 180.02562 * 12 11 9 40 40 H 0.96999 * 119.99673 * 335.00806 * 15 13 12 41 41 H 0.96998 * 120.00367 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.46946 * 59.99923 * 24 13 12 43 43 H 1.08997 * 109.46935 * 179.97438 * 24 13 12 44 44 H 1.09005 * 109.47047 * 300.00166 * 25 24 13 45 45 H 1.08991 * 109.47140 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8917 1.8222 -0.9323 5 6 3.4676 0.8260 -1.9054 6 6 3.2801 3.2387 -1.0135 7 8 2.8151 4.0427 -0.2285 8 7 4.1506 3.6456 -1.9586 9 6 4.5378 5.0562 -2.0391 10 1 4.5827 5.4786 -1.0354 11 6 5.9116 5.1709 -2.7026 12 6 6.3158 6.6442 -2.7873 13 6 5.2832 7.4094 -3.6174 14 1 5.2383 6.9865 -4.6211 15 7 5.6698 8.8201 -3.6981 16 6 5.2438 9.5878 -4.7491 17 1 4.6226 9.1533 -5.5182 18 6 5.6106 10.9243 -4.8256 19 7 5.2008 11.6623 -5.8355 20 14 6.6857 11.6757 -3.4956 21 1 8.1149 11.5192 -3.8672 22 1 6.3655 13.1191 -3.3569 23 1 6.4314 10.9860 -2.2053 24 6 3.9092 7.2947 -2.9539 25 6 3.5051 5.8214 -2.8692 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.6946 2.1129 0.7571 32 1 2.7823 0.6989 -2.7435 33 1 4.4272 1.1898 -2.2726 34 1 3.6097 -0.1313 -1.4039 35 1 4.5212 3.0044 -2.5849 36 1 6.6473 4.6254 -2.1115 37 1 5.8667 4.7485 -3.7065 38 1 6.3606 7.0669 -1.7837 39 1 7.2943 6.7258 -3.2605 40 1 6.2275 9.2103 -3.0070 41 1 5.4568 12.5964 -5.8889 42 1 3.9541 7.7175 -1.9502 43 1 3.1737 7.8402 -3.5450 44 1 3.4603 5.3987 -3.8729 45 1 2.5266 5.7398 -2.3961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482012080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:29 Heat of formation + Delta-G solvation = -35.894687 kcal Electronic energy + Delta-G solvation = -21895.340913 eV Core-core repulsion = 18719.261766 eV Total energy + Delta-G solvation = -3176.079147 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.16649 -38.20444 -36.34232 -34.96975 -33.19861 -32.02209 -30.82373 -30.45609 -27.81274 -27.26866 -24.64178 -23.21782 -22.45310 -21.45821 -20.64090 -19.76934 -18.61369 -17.54749 -17.18761 -16.33495 -15.37083 -15.07814 -14.82752 -14.46227 -14.36336 -14.01613 -13.81072 -13.56930 -13.23686 -12.96135 -12.90081 -12.65474 -12.51398 -12.21094 -12.08013 -11.94832 -11.71973 -11.63350 -11.23223 -11.12272 -10.86536 -10.85625 -10.63659 -10.23433 -10.15295 -9.82693 -9.79429 -9.54618 -9.32245 -8.94011 -8.85086 -7.23059 -5.74127 -3.09239 1.16074 3.10772 3.21983 3.40161 3.43478 3.47812 4.40269 4.56192 4.62040 4.70508 4.81219 4.84493 4.90693 4.98471 5.13958 5.16385 5.22506 5.31016 5.48924 5.50013 5.54905 5.56728 5.58048 5.60526 5.64882 5.78257 5.81207 5.82121 5.95595 6.12874 6.17829 6.20298 6.20824 6.26628 6.38751 6.48871 6.59778 6.67358 6.92417 7.07845 7.49130 8.02856 8.20147 8.45315 9.24189 9.96982 10.17102 11.44348 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.040442 B = 0.002892 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.181664 B = 9679.222970 C = 9812.088299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.073 4.073 4 C -0.188 4.188 5 C -0.117 4.117 6 C 0.551 3.449 7 O -0.544 6.544 8 N -0.721 5.721 9 C 0.144 3.856 10 H 0.087 0.913 11 C -0.118 4.118 12 C -0.124 4.124 13 C 0.182 3.818 14 H 0.055 0.945 15 N -0.750 5.750 16 C -0.240 4.240 17 H 0.090 0.910 18 C 0.002 3.998 19 N -0.935 5.935 20 Si 0.884 3.116 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.277 1.277 24 C -0.132 4.132 25 C -0.123 4.123 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.397 0.603 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.439 -26.428 10.021 28.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.093 4.093 4 C -0.191 4.191 5 C -0.174 4.174 6 C 0.339 3.661 7 O -0.422 6.422 8 N -0.372 5.372 9 C 0.040 3.960 10 H 0.105 0.895 11 C -0.157 4.157 12 C -0.163 4.163 13 C 0.073 3.927 14 H 0.073 0.927 15 N -0.392 5.392 16 C -0.370 4.370 17 H 0.108 0.892 18 C -0.193 4.193 19 N -0.583 5.583 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.173 4.173 25 C -0.163 4.163 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.144 0.856 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.233 0.767 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.847 -25.735 10.337 27.999 hybrid contribution 0.875 0.481 0.590 1.159 sum -2.972 -25.254 10.926 27.676 Atomic orbital electron populations 1.21694 0.94358 1.01954 1.02512 1.20847 0.96671 0.93678 1.03220 1.23591 0.92638 0.97329 0.95719 1.21479 1.02772 0.93759 1.01131 1.20832 1.00602 0.97785 0.98192 1.18381 0.78813 0.88307 0.80606 1.90796 1.54350 1.55287 1.41811 1.46107 1.46146 1.10651 1.34297 1.21115 0.94262 0.79827 1.00784 0.89522 1.21735 0.95141 0.98061 1.00763 1.21791 1.00030 0.93460 1.00997 1.20217 0.90913 0.84942 0.96677 0.92686 1.42802 1.61891 1.06679 1.27803 1.19081 1.26115 0.91755 1.00090 0.89239 1.24676 1.00568 0.96352 0.97714 1.69703 1.49875 1.07417 1.31349 0.86545 0.80948 0.78688 0.82348 1.21148 1.21820 1.20285 1.22188 1.00257 0.93431 1.01447 1.21891 0.98300 0.96684 0.99399 0.92187 0.92370 0.92308 0.90321 0.90472 0.85615 0.90972 0.91700 0.90890 0.76738 0.91816 0.91374 0.92096 0.91258 0.80703 0.93121 0.92627 0.91330 0.92135 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 37.16 0.37 -0.48 16 2 C -0.11 -0.64 6.00 -27.89 -0.17 -0.81 16 3 C -0.07 -0.65 9.08 -36.13 -0.33 -0.98 16 4 C -0.19 -1.79 5.99 -102.84 -0.62 -2.41 16 5 C -0.12 -0.72 8.63 36.01 0.31 -0.41 16 6 C 0.55 7.13 7.71 -12.67 -0.10 7.03 16 7 O -0.54 -9.29 15.89 5.27 0.08 -9.21 16 8 N -0.72 -8.07 5.02 -54.99 -0.28 -8.35 16 9 C 0.14 1.91 2.45 -67.93 -0.17 1.74 16 10 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 11 C -0.12 -1.41 5.39 -26.73 -0.14 -1.56 16 12 C -0.12 -1.87 5.39 -26.73 -0.14 -2.02 16 13 C 0.18 3.45 2.77 -67.93 -0.19 3.26 16 14 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 15 N -0.75 -17.79 4.92 -53.42 -0.26 -18.06 16 16 C -0.24 -6.81 10.41 -15.06 -0.16 -6.96 16 17 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 18 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 19 N -0.94 -29.64 13.97 55.49 0.78 -28.86 16 20 Si 0.88 22.39 27.74 -169.99 -4.71 17.68 16 21 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 23 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 24 C -0.13 -2.39 5.50 -26.72 -0.15 -2.54 16 25 C -0.12 -1.85 5.49 -26.72 -0.15 -2.00 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.39 5.81 -51.93 -0.30 0.09 16 31 H 0.13 1.30 7.51 -52.49 -0.39 0.90 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.34 6.47 -51.93 -0.34 0.01 16 34 H 0.07 0.36 6.72 -51.93 -0.35 0.01 16 35 H 0.40 3.29 6.60 -40.82 -0.27 3.02 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.36 8.44 5.66 -40.82 -0.23 8.21 16 41 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 355.14 15.07 5.35 5.35 Total: -1.00 -33.68 355.14 -8.55 -42.22 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -7.78 Total: 7.37 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.72 Total: -8.16 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.24 Total: -55.26 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.08 Total: -9.21 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.71 Total: 17.68 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.68 -8.55 -42.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482012080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.329 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds