Wall clock time and date at job start Fri Apr 10 2020 17:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47294 * 2 1 4 4 C 1.32997 * 119.99944 * 234.03899 * 3 2 1 5 5 C 1.50702 * 120.00044 * 353.98039 * 4 3 2 6 6 C 1.47104 * 119.99966 * 173.98449 * 4 3 2 7 7 O 1.21613 * 119.99728 * 359.97438 * 6 4 3 8 8 N 1.34771 * 120.00033 * 180.02562 * 6 4 3 9 9 C 1.46499 * 120.00047 * 180.02562 * 8 6 4 10 10 H 1.08991 * 109.47220 * 34.99499 * 9 8 6 11 11 C 1.52995 * 109.47340 * 155.00056 * 9 8 6 12 12 C 1.53005 * 109.47253 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47159 * 299.99544 * 12 11 9 14 14 H 1.08999 * 109.47074 * 300.00707 * 13 12 11 15 15 N 1.46497 * 109.47442 * 179.97438 * 13 12 11 16 16 C 1.36942 * 119.99952 * 154.99914 * 15 13 12 17 17 H 1.07999 * 119.99826 * 0.02562 * 16 15 13 18 18 C 1.38805 * 119.99560 * 180.02562 * 16 15 13 19 19 N 1.31622 * 119.99835 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 120.00544 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47013 * 89.99753 * 20 18 16 22 22 H 1.48499 * 109.47068 * 209.99688 * 20 18 16 23 23 H 1.48499 * 109.46889 * 329.99793 * 20 18 16 24 24 C 1.53008 * 109.46842 * 60.00090 * 13 12 11 25 25 C 1.53005 * 109.47170 * 299.99903 * 24 13 12 26 26 H 1.08997 * 109.47503 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47037 * 59.99457 * 1 2 3 28 28 H 1.09002 * 109.46799 * 299.99834 * 1 2 3 29 29 H 1.08998 * 109.47425 * 120.00856 * 2 1 3 30 30 H 1.09002 * 109.46799 * 240.00165 * 2 1 3 31 31 H 1.07997 * 119.99905 * 54.04833 * 3 2 1 32 32 H 1.09003 * 109.46517 * 85.14668 * 5 4 3 33 33 H 1.08993 * 109.47079 * 205.14552 * 5 4 3 34 34 H 1.09001 * 109.47334 * 325.14776 * 5 4 3 35 35 H 0.97001 * 119.99994 * 359.97438 * 8 6 4 36 36 H 1.09006 * 109.47337 * 299.99814 * 11 9 8 37 37 H 1.09005 * 109.47364 * 59.99771 * 11 9 8 38 38 H 1.08997 * 109.47203 * 59.99972 * 12 11 9 39 39 H 1.08999 * 109.46992 * 180.02562 * 12 11 9 40 40 H 0.96999 * 119.99673 * 335.00806 * 15 13 12 41 41 H 0.96998 * 120.00367 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.46946 * 59.99923 * 24 13 12 43 43 H 1.08997 * 109.46935 * 179.97438 * 24 13 12 44 44 H 1.09005 * 109.47047 * 300.00166 * 25 24 13 45 45 H 1.08991 * 109.47140 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8917 1.8222 -0.9323 5 6 3.4676 0.8260 -1.9054 6 6 3.2801 3.2387 -1.0135 7 8 2.8151 4.0427 -0.2285 8 7 4.1506 3.6456 -1.9586 9 6 4.5378 5.0562 -2.0391 10 1 4.5827 5.4786 -1.0354 11 6 5.9116 5.1709 -2.7026 12 6 6.3158 6.6442 -2.7873 13 6 5.2832 7.4094 -3.6174 14 1 5.2383 6.9865 -4.6211 15 7 5.6698 8.8201 -3.6981 16 6 5.2438 9.5878 -4.7491 17 1 4.6226 9.1533 -5.5182 18 6 5.6106 10.9243 -4.8256 19 7 5.2008 11.6623 -5.8355 20 14 6.6857 11.6757 -3.4956 21 1 8.1149 11.5192 -3.8672 22 1 6.3655 13.1191 -3.3569 23 1 6.4314 10.9860 -2.2053 24 6 3.9092 7.2947 -2.9539 25 6 3.5051 5.8214 -2.8692 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.6946 2.1129 0.7571 32 1 2.7823 0.6989 -2.7435 33 1 4.4272 1.1898 -2.2726 34 1 3.6097 -0.1313 -1.4039 35 1 4.5212 3.0044 -2.5849 36 1 6.6473 4.6254 -2.1115 37 1 5.8667 4.7485 -3.7065 38 1 6.3606 7.0669 -1.7837 39 1 7.2943 6.7258 -3.2605 40 1 6.2275 9.2103 -3.0070 41 1 5.4568 12.5964 -5.8889 42 1 3.9541 7.7175 -1.9502 43 1 3.1737 7.8402 -3.5450 44 1 3.4603 5.3987 -3.8729 45 1 2.5266 5.7398 -2.3961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482012080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:22:28 Heat of formation + Delta-G solvation = -58.158894 kcal Electronic energy + Delta-G solvation = -21896.306362 eV Core-core repulsion = 18719.261766 eV Total energy + Delta-G solvation = -3177.044595 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.20462 -39.47062 -37.08775 -36.45222 -34.73030 -33.16175 -32.28875 -31.72501 -29.26719 -27.82495 -25.73820 -24.72645 -23.69739 -22.64583 -21.75052 -21.19106 -19.78632 -19.20603 -18.03697 -17.38838 -16.84118 -16.37701 -16.04759 -15.69264 -15.16243 -15.10408 -14.94754 -14.80299 -14.60953 -14.37321 -13.89120 -13.67141 -13.49430 -13.37553 -13.13157 -12.97778 -12.91341 -12.66908 -12.42834 -12.30628 -12.20676 -12.07617 -11.99933 -11.80321 -11.69718 -11.49625 -11.23218 -10.93832 -10.83284 -10.16402 -9.84148 -9.30408 -8.02000 -5.34912 0.38793 1.37539 1.40830 1.48026 2.16557 2.30033 2.48667 3.28658 3.54460 3.69961 3.78317 3.84547 3.96980 4.18831 4.23205 4.29144 4.30236 4.33171 4.44378 4.49719 4.56040 4.59572 4.70446 4.76872 4.83332 4.88330 4.91706 5.06616 5.08407 5.10986 5.11868 5.14996 5.21106 5.24170 5.34793 5.46231 5.49123 5.55626 5.58071 5.65201 5.78524 6.22806 6.60191 7.08823 7.26456 7.85964 8.04734 9.19697 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.040442 B = 0.002892 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.181664 B = 9679.222970 C = 9812.088299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C -0.071 4.071 4 C -0.198 4.198 5 C -0.114 4.114 6 C 0.543 3.457 7 O -0.595 6.595 8 N -0.706 5.706 9 C 0.150 3.850 10 H 0.066 0.934 11 C -0.106 4.106 12 C -0.117 4.117 13 C 0.175 3.825 14 H 0.048 0.952 15 N -0.754 5.754 16 C -0.226 4.226 17 H 0.056 0.944 18 C -0.068 4.068 19 N -0.986 5.986 20 Si 0.956 3.044 21 H -0.275 1.275 22 H -0.299 1.299 23 H -0.255 1.255 24 C -0.125 4.125 25 C -0.113 4.113 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.416 0.584 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.364 0.636 41 H 0.257 0.743 42 H 0.046 0.954 43 H 0.036 0.964 44 H 0.073 0.927 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.846 -29.580 11.043 31.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.138 4.138 3 C -0.091 4.091 4 C -0.201 4.201 5 C -0.170 4.170 6 C 0.333 3.667 7 O -0.478 6.478 8 N -0.357 5.357 9 C 0.045 3.955 10 H 0.084 0.916 11 C -0.145 4.145 12 C -0.155 4.155 13 C 0.068 3.932 14 H 0.067 0.933 15 N -0.396 5.396 16 C -0.357 4.357 17 H 0.074 0.926 18 C -0.259 4.259 19 N -0.637 5.637 20 Si 0.783 3.217 21 H -0.201 1.201 22 H -0.226 1.226 23 H -0.180 1.180 24 C -0.165 4.165 25 C -0.152 4.152 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.254 0.746 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.198 0.802 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.091 0.909 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.236 -28.974 11.359 31.201 hybrid contribution 0.258 1.408 0.254 1.454 sum -1.977 -27.566 11.613 29.977 Atomic orbital electron populations 1.21714 0.94318 1.02829 1.01792 1.20893 0.96567 0.91670 1.04698 1.23763 0.92013 0.98640 0.94711 1.21562 1.03529 0.92426 1.02618 1.20896 1.01030 0.97447 0.97665 1.19038 0.78200 0.89541 0.79943 1.90772 1.56236 1.56961 1.43819 1.45907 1.45564 1.10019 1.34246 1.20885 0.94538 0.80712 0.99334 0.91621 1.21660 0.94489 0.96059 1.02242 1.21699 0.98864 0.94923 1.00051 1.20471 0.92442 0.82948 0.97365 0.93346 1.42850 1.61836 1.08309 1.26614 1.19036 1.24386 0.92156 1.00142 0.92616 1.25517 1.02900 0.97017 1.00480 1.69888 1.52152 1.07675 1.33939 0.85395 0.79079 0.77157 0.80057 1.20054 1.22550 1.17967 1.22019 0.99075 0.95364 1.00082 1.21762 0.98225 0.94814 1.00415 0.90484 0.93253 0.92961 0.88916 0.88750 0.88025 0.90011 0.90596 0.89091 0.74582 0.88919 0.89481 0.92019 0.90412 0.80246 0.93442 0.93495 0.94498 0.90856 0.93754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.89 71.98 0.71 -0.75 16 2 C -0.10 -0.96 6.00 29.85 0.18 -0.79 16 3 C -0.07 -1.19 9.08 24.52 0.22 -0.97 16 4 C -0.20 -3.43 5.99 -18.70 -0.11 -3.54 16 5 C -0.11 -1.00 8.63 71.24 0.62 -0.38 16 6 C 0.54 13.57 7.71 86.57 0.67 14.24 16 7 O -0.60 -20.79 15.89 -4.07 -0.06 -20.85 16 8 N -0.71 -14.26 5.02 -446.15 -2.24 -16.50 16 9 C 0.15 3.73 2.45 44.99 0.11 3.84 16 10 H 0.07 1.96 7.58 -2.39 -0.02 1.95 16 11 C -0.11 -2.17 5.39 30.59 0.16 -2.00 16 12 C -0.12 -3.23 5.39 30.60 0.16 -3.07 16 13 C 0.18 6.54 2.77 44.99 0.12 6.67 16 14 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 15 N -0.75 -35.52 4.92 -322.94 -1.59 -37.11 16 16 C -0.23 -13.07 10.41 84.03 0.87 -12.20 16 17 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 18 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 19 N -0.99 -64.29 13.97 21.65 0.30 -63.98 16 20 Si 0.96 46.44 27.74 68.60 1.90 48.34 16 21 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 23 H -0.25 -11.32 6.52 99.48 0.65 -10.67 16 24 C -0.12 -4.58 5.50 30.60 0.17 -4.41 16 25 C -0.11 -3.34 5.49 30.60 0.17 -3.18 16 26 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 0.61 5.81 -2.39 -0.01 0.59 16 31 H 0.10 2.17 7.51 -2.91 -0.02 2.15 16 32 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 0.49 6.47 -2.39 -0.02 0.48 16 34 H 0.09 0.50 6.72 -2.39 -0.02 0.48 16 35 H 0.42 5.40 6.60 -92.71 -0.61 4.79 16 36 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.36 16.52 5.66 -92.71 -0.52 15.99 16 41 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 42 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -76.55 355.14 2.61 -73.94 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: -0.23 Total: 26.33 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 4.53 Total: -10.15 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -3.53 Total: -117.60 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.06 Total: -20.85 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.90 Total: 48.34 kcal Total: -76.55 2.61 -73.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482012080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.777 kcal (2) G-P(sol) polarization free energy of solvation -76.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds